BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495501
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54190.1 | Symbols: PORA | protochlorophyllide oxidoreductas... 2180 0.0
AT4G27440.1 | Symbols: PORB | protochlorophyllide oxidoreductas... 1133 0.0
> AT5G54190.1 | Symbols: PORA | protochlorophyllide oxidoreductase
A | chr5:21990999-21992812 REVERSE LENGTH=1441
Length=1441
Score = 2180 bits (1180), Expect = 0.0
Identities = 1329/1401 (95%), Gaps = 10/1401 (1%)
Strand=Plus/Plus
Query 1 TTAAGTCTTAAAAGAAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTC 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 TTAAGTCTTAAACGAAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTC 80
Query 61 TGTCCGAAAAGATGGAAAATTGAATGCTT---CTTCATCATCATTCAAAGAGTCGAGTCT 117
|||||| |||||||||||||| ||||||| | |||||||||||||||||||| |||||
Sbjct 81 TGTCCGCAAAGATGGAAAATTAAATGCTTCAGCATCATCATCATTCAAAGAGTCTAGTCT 140
Query 118 GTTTGGTGTTTCACTATCGGAGCATAGCAAAGCTGACTTTGTCTCTTCTTCATTGAGATG 177
||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 141 GTTCGGTGTTTCACTTTCGGAGCAAAGCAAAGCTGACTTTGTCTCTTCCTCATTGAGATG 200
Query 178 CAAGAGGGAACAAAGCTTGAGGAATAACAAAGCAATTATTCGAGCTCAAGCAATCGCGAC 237
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 201 CAAGAGGGAACAGAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAATCGCGAC 260
Query 238 TTCAACACCATCGGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTTAGAAAAGGAAA 297
|||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 261 TTCAACTCCATCAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTTAGAAAAGGAAA 320
Query 298 CGTGGTTGTCACGGGAGCTTCTTCAGGGTTAGGGTTAGCAACGGCAAAGGCATTAGCCGA 357
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 321 CGTGGTTGTCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGCAAAGGCATTAGCCGA 380
Query 358 GACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGC 440
Query 418 TCAATCCGCTGGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCGTCTTT 477
|||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 441 TCAATCTGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCTTT 500
Query 478 GGACAGCGTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGATGTGTT 537
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 501 GGACAGCGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTGTT 560
Query 538 GGTCTGCAATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCTGAAGG 597
|||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 561 GGTCTGCAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAAGG 620
Query 598 GTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGAT 680
Query 658 TGATGACTTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAAC 717
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAAC 740
Query 718 CGGAAATACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGATTTGAG 777
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 741 CGGAAACACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTGAG 800
Query 778 GGGATTAGCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTT 837
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GGGACTAGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTT 860
Query 838 CGTTGGGGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAAGAGTT 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 861 TGTTGGCGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAGTT 920
Query 898 TCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTGTACCCCGGTTGTAT 957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 921 TCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTTTACCCCGGTTGTAT 980
Query 958 CGCGACAACTGGTTTGTTCAGAGAGCATATTCCTCTCTTCCGTACCCTCTTCCCTCCTTT 1017
|| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 981 TGCAACGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCCTTT 1040
Query 1018 CCAGAAGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGACTTGCTCA 1077
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1041 CCAGAAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCTCA 1100
Query 1078 GGTGGTGGGTGACCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACAAGACCTC 1137
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GGTGGTGGCTGATCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACAAGACCTC 1160
Query 1138 GGCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GGCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGT 1220
Query 1198 TTGGGAAGTCAGCGAGAAGCTCGTAGGCTTGGCCTAAAAATTGATATGAGACTCTTCCTC 1257
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1221 TTGGGAAGTCAGCGAGAAGCTCGTAGGCTTGGCCTAAAATTTGATATGAGATTTTTCCTC 1280
Query 1258 TGTGTTTTAACCTTTGGTTTTGCTTAAGATGATAAATAAACAAAAGAGGAGACATTGATA 1317
|||||| |||||||||||| ||||||||||| ||| |||||||| |||||||||| |||
Sbjct 1281 GGTGTTTCAACCTTTGGTTTGGCTTAAGATGAGAAACAAACAAAAAAGGAGACATTAATA 1340
Query 1318 AATCTTGTACCAAATCAAATTTGACTTT-GTAGTTGTGTTTTGGCTAATTCTATCTGTGA 1376
|| | |||| ||| | ||||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 1341 AAGCCTGTAACAA--C---TTTGA-TTTAGTAGTTGTGTTTTGGCTGATTCTATCTGTAA 1394
Query 1377 TGAAATAAATAATTCCACTTT 1397
||||| |||||||||||||||
Sbjct 1395 TGAAACAAATAATTCCACTTT 1415
> AT4G27440.1 | Symbols: PORB | protochlorophyllide oxidoreductase
B | chr4:13725546-13727353 FORWARD LENGTH=1554
Length=1554
Score = 1133 bits (613), Expect = 0.0
Identities = 1041/1244 (84%), Gaps = 43/1244 (3%)
Strand=Plus/Plus
Query 16 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGAAAAGATG- 74
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 99 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTTCGCAAAGATGC 158
Query 75 GAAAATTGAATGCTTCTTCATCATCATTCAAAGAGTCGAGTCTGTTTGGTGTTTC-ACTA 133
||| |||||||||||||||||||| ||||| || |||||||| ||||||| || | ||
Sbjct 159 GAAG-TTGAATGCTTCTTCATCATCTTTCAAGGACTCGAGTCTTTTTGGTGCCTCCATTA 217
Query 134 TCGGAGCATAGCAAAGCTGA-CTTTGTCTCTTCTTCATTGAGATGCAAGAGGGAACAAAG 192
|| | || | |||| | || | | | ||||| || || |||| |||||| ||||| ||
Sbjct 218 CCG-ACCAAATCAAATCCGAACATGGA-TCTTCCTCGTTAAGATTCAAGAGAGAACAGAG 275
Query 193 CTTGAGGAATAACAAAGCAATTATTCGAGCTCAAGCAA-TCGCGACTTCAA-CACC-ATC 249
||| |||||| | | |||||| ||||| ||| | | |||||||||| | || | |
Sbjct 276 CTTAAGGAAT--CTA-GCAATT---CGAGCCCAAACCGCT-GCGACTTCAAGC-CCTA-C 326
Query 250 GGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTT-AGAAAAGGAAACGTGGTTGTCA 308
|| |||||||| | | ||| |||||||||| || || |||||||| ||||| ||||
Sbjct 327 AGTTACAAAATC--CGTG-GACGGCAAGAAAACG-TTGAGGAAAGGAAATGTGGTGGTCA 382
Query 309 CGGGAGCTTCTTCAGGGTTAGGGT-TAGCAACGGC-AAAGGCAT-TAGCCGAGACAGGTA 365
| ||||| || || |||||||| | |||| ||||| |||| | | |||| |||||||| |
Sbjct 383 CTGGAGCCTCGTCTGGGTTAGG-TCTAGCCACGGCTAAAG-C-TCTAGCTGAGACAGGGA 439
Query 366 AATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGCTCAATCCG 425
||||| |||||||||||||||||||||||||||| || || |||||||| ||| ||||||
Sbjct 440 AATGGAACGTGATAATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCTGCTAAATCCG 499
Query 426 CT-GGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCGTCTTTGGACAGC 484
| || |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 500 -TAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGC 558
Query 485 GTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGATGTGTTGGTCTGC 544
||||| ||||| |||||||| |||||| || | |||| |||||||||||| |||||||||
Sbjct 559 GTGAGACAGTTTGTTGATAATTTCAGGAGAACAGAGACGCCTCTCGATGTTTTGGTCTGC 618
Query 545 AATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCTGAAGGGTTTGAG 604
||||||||||||||| || |||||||| | ||||||| || ||||||||||||||||
Sbjct 619 AATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAG 678
Query 605 CTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGAC 664
||||| |||| || ||||||||||| || |||||||| |||| |||||| ||||||||
Sbjct 679 CTTAGTGTTGCGACGAACCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGAC 738
Query 665 TTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGGAAAT 724
|| ||||| || ||||| || ||||| ||||||||||| || |||||||| ||||| ||
Sbjct 739 TTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGATCCATTACCGGGAAC 798
Query 725 ACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGATTTGAGGGGATTA 784
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 799 ACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTA 858
Query 785 GCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTTCGTTGGG 844
|| || || || ||||| |||||||||| || ||||| |||||||||||||||| ||
Sbjct 859 GCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGT 918
Query 845 GCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAAGAGTTTCATAGG 904
|||||||| || ||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 919 GCAAAGGCTTACAAAGACAGTAAAGTCTGCAATATGTTGACAATGCAAGAGTTTCACAGG 978
Query 905 CGTTTCCATGAAGACACCGGCA-TAACTTTTGCTTCCCTGTACCCCGGTTGTATCGCGAC 963
|||||||||||||| || || | | ||||| ||||| || ||||||||||| ||||| |
Sbjct 979 CGTTTCCATGAAGAAACTGG-AGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTC 1037
Query 964 AACTGGTTTGTTCAGAGAGCATATTCCTCTCTTCCGTACCCTCTTCCCTCC-TTTCCAGA 1022
|| ||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct 1038 CACAGGTTTATTCCGAGAGCACATTCCTCTCTTCCGTGCCCTCTTCCCTCCCTTTC-AGA 1096
Query 1023 AGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGACTTGCTCAGGTGG 1082
|||||||||| ||||| || |||||||| |||||| | || |||||||||||||||||||
Sbjct 1097 AGTACATCACTAAAGGATATGTCTCCGAAACAGAGTCAGGCAAAAGACTTGCTCAGGTGG 1156
Query 1083 TGGGTGACCCAAGCTTGACGAAGTC-GGGAGTGTATTGGAGCTGGAACAA-GACCTCGGC 1140
|| |||| |||||||||||||| || ||| || ||||||||||||||||| | | |||||
Sbjct 1157 TGAGTGATCCAAGCTTGACGAAATCAGGG-GTTTATTGGAGCTGGAACAATG-CTTCGGC 1214
Query 1141 TTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTTTG 1200
||| |||||||| ||| | || ||||||| || || || ||||||||||||| ||| ||
Sbjct 1215 TTCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTG 1274
Query 1201 GGA-AGTCAGCGAGAAGCTCGTAGGCTTGGCCTAA-AAA-TTGA 1241
||| | |||| ||||||||||| |||||||||||| ||| ||||
Sbjct 1275 GGAGA-TCAGTGAGAAGCTCGTGGGCTTGGCCTAATAAACTTGA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5