BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495503
Length=2719
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54200.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4154 0.0
> AT5G54200.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21993349-21997076 REVERSE LENGTH=2694
Length=2694
Score = 4154 bits (2249), Expect = 0.0
Identities = 2575/2727 (94%), Gaps = 44/2727 (2%)
Strand=Plus/Plus
Query 1 atgatgaagatgatgatgatg-at-gaATCGACGAAGCAACGTCGTTAGATTTgaagcta 58
||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGATGAAGATGATGATGATGAATCGAA--GACGAAGCAACGTCGTTAGATTTGAAGCTA 58
Query 59 agaaagtagacgaagaagaagaagaagaTAATAATGACGATTGTTTCTATGAGTCTCTAG 118
|||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 AGAAAGAAGACAAAGTAGAAGAAGAAGATAACAATGACGATTGTTTCTATGAGTCTCTAG 118
Query 119 ATCGTGTATTATCTTCTTGCTCTTGTTCTACTTCAAACTCTGATTACGACTCTGACCCGA 178
|||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 ATCGTGTACTATCGTCTTGCTCTTGTTCAACTTCAAACTCTGATTACGACTCTGACCCGA 178
Query 179 ATGTTTCTGATTCGATTCACGATCCGAGTCCGTTTCCTGTTCCTGTGTTTCCTATTGGAA 238
||||||| |||||||| |||||||||| |||||||||||||||| || | || |
Sbjct 179 ATGTTTCCGATTCGATCCACGATCCGACTCCGTTTCCTGTTCCTATG-----T-TT---A 229
Query 239 GCTCTGGGTTTGAGCTTTGGAAATCTGAGCCTGAATCTGTGAAGGAGAGACGAATCAGGT 298
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 230 CCTCTGGGTTCGAGCTGTGGAAATCTGAGCCTGAATCTGTGTCGGAGAGACGAATCAGGT 289
Query 299 TATTGCGTGGTTTGGGACTTAGTAATGAGCCGGATCTACCTCCGGTGAGTCAGTTACGGT 358
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 290 TATTGCGTGGTTTGGGACTTAGTAATGAGCCGGATCTACCTCCGGCGAGTCAGTTACGTT 349
Query 359 CTAGAAGTCGGAGAAACAGTTCTCATTTCGCTAGATCGGTTTCGTCTGATGTTTTGATTT 418
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||
Sbjct 350 CTAGAAGTCGGAGAAACAGTTCTCATTTCTCTAGATCGGTTCCTTCTGATGTTTTGACTT 409
Query 419 CGAATCATCATGGTAAATGTGTATTGAGATCAGATGT-TGCAGGTAGTGACAATGTCGAT 477
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 410 CGAATCATCATGGTAAATGTGTGTTGAGATCAGATGTAT-CAGGTACTGACAATGTCGAT 468
Query 478 CGAGAGTATACTGGATCTCGTATGCGAAACGATGGTGTTGATTTTATAAGCAAAGAGCCG 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CGAGAGTATACTGGATCTCGTATGCGAAACGATGGTGTTGATTTTATAAGCAAAGAGCCA 528
Query 538 ATGGTAAGATCTCTTAGGGACATTGTagagagagagagTTATGGGAATGGGAGAGATGTT 597
|||| ||||||||||||||||||||| ||||| | || | |||||| |||||||||
Sbjct 529 ATGGAAAGATCTCTTAGGGACATTGT--AGAGA-A-AG--A---GAATGGTAGAGATGTT 579
Query 598 GTTTTGGAGGAGCAAATGTGTACCATTAGGAATTTAGATACTGGGAGAGAGTTTGTGGTG 657
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 580 GTTTTAGAGGAGCAAATGTGTACTATTAGGAATTTAGATACTGGGAGAGAGTTTGTGGTG 639
Query 658 AATGAAGTTCGAGAAGATGGAATGTTGGATAGGTTGAAGGAAGTAGGTACTGATCGGCAA 717
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 640 AATGAAGTTCGAGAAGATGGGATGTTGGAGAGGTTGAAGGAAGTAGGTACTGATCGGCAA 699
Query 718 TTGACTCTGGAGGAGTTTGAGATGTGTGTTGGGACATCACCGATTGTGCTCGAGTTGATG 777
||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 700 TTGACTCTGGAGGAGTTTGAGATTTGTGTTGGTACGTCACCGATTGTGCTTGAGTTGATG 759
Query 778 AGGAGGCAAAATGTTGAAGATGTTTGTAAAGACTCTGTGGATTTGGATACTAATGTTAGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGGAGGCAAAATGTTGAAGATGTTTGTAAAGACTCTGTGGATTTGGATACTAATGTTAGT 819
Query 838 GGAAGCAGGGTGACTAAGCATAGAAGGAGAGGGAGTTGGCTAAAGAGTATAAAGAATGTT 897
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 820 GGAAGCAGGGTGACTAAACATAGAAGGAGAGGGAGTTGGTTAAAGAGTATTAAGAATGTT 879
Query 898 GCTAGTAGTGTGACCGGGTATAAAGAGCGACGGAGCACTGATGATAGGGATTCACCGTCT 957
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 880 GCTAGTAGTGTGACTGGGTATAAAGAGCGACGGAGCACCGATGATAGGGATTCACCGTCT 939
Query 958 GAGAGAGGTGGTCAGAGGTTTAGCTCTGCAACTGATGATAG-CAGAGATATGTCCTTTCA 1016
||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 940 GAGAGAGGTGGTCAGAGGTTTAGCTCTGCAACTGATGATAGTC-GAGATATGTCTTTTCA 998
Query 1017 TGACCCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGTCATGTAAAGAGCTCACAGCACT 1076
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 999 TGACCCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGTCGTGTAAAGAGCTTACTGCACT 1058
Query 1077 TTTCAAGAGCCAAGAGATTCAAGCTCATAAAGGGTCGATATGGAGCATTAAGTTCAGTTT 1136
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1059 TTTCAAGAGTCAAGAGATTCAAGCTCATAAAGGATCGATATGGAGTATTAAGTTTAGTTT 1118
Query 1137 GGATGGGAGGTATCTTGCTAGTGCTGGTGAGGATTGTGTTATTCAGATTTGGAAGGTTGT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGATGGGAGGTATCTTGCTAGTGCTGGTGAGGATTGTGTTATTCAGATTTGGAAGGTTGT 1178
Query 1197 TGAGTCAGAAAGAAAAGGGGAACTCTTGTCGATGGATAAACAAGAAGATGGAAGTATAAA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TGAGTCAGAAAGAAAAGGGGAACTCTTGTCGATGGATAAACAAGAAGATGGAAGTATAAA 1238
Query 1257 TTTGTTTCTTTTGGCAAATG-ATTCACCAGAACCAGTTTCAATGTCTCCAAAGAGAAGAG 1315
|||||||||||| ||||||| || |||| ||||| |||||||||||||||||||||||||
Sbjct 1239 TTTGTTTCTTTTAGCAAATGGAT-CACCCGAACCCGTTTCAATGTCTCCAAAGAGAAGAG 1297
Query 1316 GGAGAACGTCTTTCAGCCGAAAATCAGTGAGCTTGGACAATGTTCTTGTTCCAGAGGCAG 1375
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GAAGAACATCTTTTAGCCGAAAATCAGTGAGCTTGGACAATGTTCTTGTTCCAGAGGCAG 1357
Query 1376 TCTTTGGTCTTTCAGAGAAACCCTTGTGTTCATTTGTAGGGCATTTGGATGACGTGCTTG 1435
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1358 TCTTTGGTCTTTCAGAGAAACCCGTGTGTTCATTTGTAGGGCATTTGGATGACGTACTTG 1417
Query 1436 ATCTTTCATGGTCAAAATCTCAGCACCTGCTTTCCTCTTCCATGGACAAGACTGTCCGTT 1495
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1418 ATCTTTCGTGGTCAAAATCTCAGCACCTGCTTTCCTCTTCCATGGATAAGACTGTTCGTC 1477
Query 1496 TATGGGACTTATCTAGCAAGACATGTTTGAAAGTCTTCTCACATAGTGACTACGTGACTT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TATGGGACTTATCTAGCAAGACATGTTTGAAAGTCTTCTCACATAGTGACTACGTGACTT 1537
Query 1556 GCATCCAGTTTAATCCGGTGGATGACAATTACTTCATCAGCGGATCATTGGATGCAAAAG 1615
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 GCATCCAGTTTAATCCCGTGGATGACAATTACTTCATCAGCGGATCATTGGATGCAAAAG 1597
Query 1616 TTCGGATAAGGAGCATTCCTGATCATCAAGTTGTTGACTGGAATGATCTTCATGAGATGG 1675
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1598 TTCGGATATGGAGTATTCCTGATCATCAAGTTGTTGATTGGAATGATCTTCATGAGATGG 1657
Query 1676 TCACAGCTGCCTGCTACACACCGGATGGACAGGGTGCATTGGATGGTTCATACAAAGGAA 1735
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1658 TCACAGCTGCTTGCTACACACCGGATGGACAGGGTGCATTGGTTGGTTCATACAAAGGAA 1717
Query 1736 CATGTTGCTTATACAACACACATGATAACAAACTGCAGCAAAGACGTGAAATCAATCTGA 1795
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1718 CATGCTGCTTATACAACACACATGATAACAAACTGCAGCAGAGACGCGAAATCAATCTGA 1777
Query 1796 AGAACAGGAAAAAGAAAACCCATCACAAGAAAATCACTGGTTTTCAGTTTGTGGCAGGAA 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 AGAACAGGAAAAAGAAAACCCATCACAAGAAAATCACTGGTTTTCAGTTTGTGGCAGGAA 1837
Query 1856 GTTCATCGGAAGTGCTCGTCACATCTGCAGATTCACGTACGCGTGTTGTTGATGGTGTTG 1915
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 GTTCATCGGAAGTTCTCGTCACATCTGCAGATTCACGTACGCGTGTTGTTGATGGTGTTG 1897
Query 1916 ACCTTGTCCACAAGTTTAAAGGATTTCGCAACACGAATAGCCAAATCTCGGCTTCACTTA 1975
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 ACCTTGTTCACAAGTTTAAAGGATTTCGCAACACGAATAGCCAAATCTCGGCTTCACTTA 1957
Query 1976 CATCAAACGGGAAATTCCTAGTCTCAGCAAGCGAAGACTCTAATGTGTATGTATGGAACT 2035
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1958 CATCAAACGGGAAATTCCTAGTATCAGCAAGCGAAGACTCTAATGTGTATGTATGGAACT 2017
Query 2036 ACGACTCAGACTCTCGAGCTGGAAGAAGCAAACGTGTCACAGTCACAAACTCATACGAAC 2095
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2018 ACGACTCAGACTCTCGAGCAGGAAGAAGCAAACGTGTCACAGTCACAAACTCATACGAAA 2077
Query 2096 ACTTTTACTGTCGAGATGTCTCCGTGGCTGCACCTTGGCCTGGGAAAATGAGTAACAACC 2155
||||||| ||||| || ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 2078 ACTTTTATTGTCGTGACGTCTCTGTGGCTGCACCTTGGCCTGGCAAAATCAGTAACAACC 2137
Query 2156 AAAGC-AACAACAGCCCCCAACAGTCATCCTTCACAGCCAATAATACCCCTCCGACACCT 2214
| | | |||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 2138 ACA-CTAACAACAGCCCCGAACAGTCATCCTTCACAGCCAATAATAACCCTCCGACACCT 2196
Query 2215 GTCAATGATCCAACCAACAACAAAACCGTCACCAACGGTATCATTTCAAGCGCCACAAAC 2274
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 GTCAACGATCCAACCAACAACAAAACCGTCACCAACGGTATCATTTCAAGCGCCACAAAC 2256
Query 2275 CGATACTTCTTCGATAGAATCTCAGCAACATGGCCTGAAGAAAAACTCTTATTGGCTGCA 2334
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2257 CGATACTTCTTCGATAGAGTCTCAGCAACATGGCCTGAAGAAAAACTCTTGCTGGCTGCA 2316
Query 2335 AAGAACCGAACCCGAACTAGCCCTCGTGTGAGCGTCGACATGTCTAACATACAGGTTAAC 2394
|| |||||| || |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2317 AAAAACCGAGCCAGAACAAGCCCTCGTGTGAGCGTGGACATGTCTAACATACAGGTTAAC 2376
Query 2395 ACAAAACCGAGTGCCTCGGCTTGGTCTATGGTGATTGTGACTGGCAGTTTACGAGGCGAA 2454
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2377 ACAAAACCGAGTGCCTCGGCGTGGTCTATGGTGATTGTGACTGGCAGTCTACGAGGCGAA 2436
Query 2455 ATCAGAACATTTCAGAATTTTGGATTACCAGTTCGTCTATGAGGCAAGGAGAAAGTTTTA 2514
||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 2437 ATCAGAATATTTCAGAATTTTGGATTTCCAGTTCGTCTATGATGCAAGGAGAAGGTTTTA 2496
Query 2515 CAAAATCAAAAAGCCCAAGGCAAAGTGAAAATTTTGC-TTCGTAAAACCATATCCTGTCA 2573
||| ||||||| || |||||||||||||| |||| | || |||||||||| ||||||||
Sbjct 2497 CAATATCAAAAT-CCTAAGGCAAAGTGAAA-TTTTCCCTTAGTAAAACCATCTCCTGTCA 2554
Query 2574 AAAGTGTATAGATTGAGAGAAGGTT-GGTTCGTCCACTGACTTGTCTCTCttttttttct 2632
||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||| |
Sbjct 2555 AAAGTGTATAGATTGAGAGAAGGTTTGGTTCATCCACTGACTTCTCTCG-TTTTTTTT-T 2612
Query 2633 tttaccacgcttccttcttttatttatttatcttatttGTTATCTCTAAAATTCAAATCT 2692
||||||||||||| || || |||||| || ||||||||||||||||||||||||||
Sbjct 2613 TTTACCACGCTTC-TT-TT--ATTTAT----CTGATTTGTTATCTCTAAAATTCAAATCT 2664
Query 2693 CTAGCAAATATATATAATGTTATTTTT 2719
|||||||||||||||||||||||||||
Sbjct 2665 CTAGCAAATATATATAATGTTATTTTT 2691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135049410556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5