BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495510
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54250.1 | Symbols: ATCNGC4, CNGC4, HLM1, DND2 | cyclic nucl... 3461 0.0
> AT5G54250.1 | Symbols: ATCNGC4, CNGC4, HLM1, DND2 | cyclic nucleotide-gated
cation channel 4 | chr5:22025553-22030060 REVERSE
LENGTH=2305
Length=2305
Score = 3461 bits (1874), Expect = 0.0
Identities = 2041/2123 (96%), Gaps = 6/2123 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTGTTGCATGCGTTAGTACTTTCGATGGCCACAGAGCACGAATCCACACGC 60
||||||||| |||||||||||||||||||||| ||||||||||| || |||| |||||||
Sbjct 57 TCTCTCTCTGTGTTGCATGCGTTAGTACTTTCAATGGCCACAGAACAAGAATTCACACGC 116
Query 61 GCATCACGCTTCTCACGTGACTCAAGCAGCGTAGGATATTACTCagaagaagataacacg 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 117 GCATCACGCTTCTCACGTGACTCAAGCAGCGTTGGATATTACTCAGAAGAAGATAACACG 176
Query 121 gaggaggaagaggaagatgaagaagagatggaagaaatcgaagaagaggaggaagaagag 180
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGGAGGAAGATGAAGAAGAAGAAGAGATGGAAGAAATCGAAGAAGAGGAGGAAGAAGAG 236
Query 181 gaagaagaagaTCCACGTGTAGGTCTCGCGTGCGGAGGAAGAAGAAACGGGTCAAGTAAT 240
||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 237 GAAGAAGAAGACCCACGTATAGGGCTCACGTGCGGAGGAAGAAGAAACGGGTCAAGTAAT 296
Query 241 AACAACAAATGGATGATGTTGGGTCGGATACTTGACCCGAGATCCAAATGGGTTCGAGAA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 297 AACAACAAATGGATGATGTTGGGTCGAATACTTGACCCGAGATCCAAATGGGTTCGAGAA 356
Query 301 TGGAACAAAGTCTTTCTCCTTGTATGCGCGACAGGTCTATTCGTAGACCCACTTTTTCTC 360
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 357 TGGAACAAAGTCTTTCTCCTTGTATGCGCAACGGGTCTATTCGTAGACCCACTTTTTCTC 416
Query 361 TATACCCTATCAGTGAACGACACGTGTATGTGTCTCCTCGTCGACGGTTGGCTTGCTCTC 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TATACCCTATCAGTGAGCGACACGTGTATGTGTCTCCTCGTCGACGGTTGGCTTGCTCTT 476
Query 421 ACCGTCACTGCCTTACGCTCCATGACCGATCTTTTGCA-CTTATGGAACATTTGGATTCA 479
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 477 ACCGTCACTGCCTTACGCTCCATGACCGATCTTTTGCACCTT-TGGAACATTTGGATTCA 535
Query 480 GTTCAAGATTGCTCGCCGGTGGCCTTATCCCGGCGGAGATAGCGACGGCGATACCAACAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTTCAAGATTGCTCGCCGGTGGCCTTATCCCGGCGGAGATAGCGACGGCGATACCAACAA 595
Query 540 AGGAGGTGGGACACGTGGCTCTACGAGGGTTGCTCCACCTTACGTTAAGAAGAATGGGTT 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGGAGGAGGGACACGTGGCTCTACGAGGGTTGCTCCACCTTACGTTAAGAAGAATGGGTT 655
Query 600 CTTCTTCGATCTCTTCGTCATCTTACCATTGCCTCAGGTGGTGTTGTGGGTGGTGATACC 659
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 656 CTTCTTCGATCTCTTCGTCATATTACCATTACCTCAGGTGGTGTTGTGGGTAGTGATACC 715
Query 660 TTCTCTTCTAAAGAGAGGCTCTGTGACTTTAGTGGTGTCAGTTTTGCTTGTAACATTCCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTCTCTTCTAAAGAGAGGCTCTGTGACTTTAGTGGTGTCAGTTTTGCTTGTAACATTCCT 775
Query 720 CTTTCAATATCTACCGAAAATATATCATTCAATCCGCCATCTCCGCCGCAATGCTACTCT 779
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 776 CTTCCAATATCTACCGAAAATATATCACTCAATCCGCCATCTCCGCCGCAATGCTACTCT 835
Query 780 CTTGGGTTACATCTTCGGCACCGTCTGGTGGGGAATTGCACTCAACATGATTGCTTATTT 839
|| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 836 CTCGGGTTACATCTTCGGCACCGTTTGGTGGGGCATTGCACTCAACATGATCGCTTATTT 895
Query 840 CGTCGCGGCTCATG-GAGCAGGAGCATGTTGGTATTTGTTAGGAGTTCAAAGATCAGCGA 898
|||||||||||||| | |||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 896 CGTCGCGGCTCATGCG-GCAGGAGCGTGTTGGTACTTGTTAGGAGTTCAAAGGTCAGCGA 954
Query 899 AATGTCTTAAAGAACAATGTGAAAACACAATGGGATGTGACATAAGGATGTTGTCATGTA 958
|||||||||| ||||||||||||||||| || ||||| ||| ||||||||||||||||||
Sbjct 955 AATGTCTTAAGGAACAATGTGAAAACACGATAGGATGCGACTTAAGGATGTTGTCATGTA 1014
Query 959 AGGAACCTGTGTACTATGGAACGACCGTAATGGTCCTTGATAGAGCTAGACTTGCTTGGG 1018
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1015 AGGAACCGGTGTACTATGGAACGACCGTGATGGTCCTTGACAGAGCTAGACTTGCTTGGG 1074
Query 1019 CACAAAACCATCAAGCCCGATCTGTTTGCTTAGATATAAACACCAACTACACATATGGTG 1078
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1075 CACAAAACCATCAAGCTCGATCTGTTTGCTTAGATATTAACACCAATTACACATATGGTG 1134
Query 1079 CTTATCAATGGACCATTCAACTTGTGAGCAATGAGAGCCGGTTGGAGAAAATCCTTTTTC 1138
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1135 CTTATCAATGGACCATTCAACTTGTGAGCAGTGAGAGTCGGTTGGAGAAAATCCTTTTTC 1194
Query 1139 CTATCTTTTGGGGTCTCATGACTCTCAGCACATTTGGGAATTTGGAGAGCACAACAGAAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CTATCTTTTGGGGTCTCATGACTCTCAGCACATTTGGGAATTTGGAGAGCACAACAGAAT 1254
Query 1199 GGTCGGAGGTTGTCTTCAATATCATAGTTCTAACAAGTGGTCTTCTTCTCGTTACCATGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GGTCGGAGGTTGTCTTCAATATCATAGTTCTAACAAGTGGTCTTCTTCTCGTTACCATGT 1314
Query 1259 TGATTGGTAACATCAAGGTGTTTCTGCACGCAACAACTTCAAAGAAGCAAGCAATGCACT 1318
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1315 TGATTGGTAACATCAAGGTATTTCTGCACGCTACAACTTCAAAGAAGCAAGCAATGCACT 1374
Query 1319 TGAAAATGAGGAACATAGAGTCGTGGATGAAGAAGAGACATTTGCCATTAGGCTTTAGGC 1378
||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |
Sbjct 1375 TGAAAATGAGGAACATAGAGTGGTGGATGAAGAAGAGACATTTGCCAATAGGGTTTAGAC 1434
Query 1379 AGCGAGTCCGCAACTATGAGCGGCAAAGATGGGCTGCTATGCGCGGTGTAGACGAGTGTG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AGCGAGTCCGCAACTATGAGCGGCAAAGATGGGCTGCTATGCGCGGTGTAGACGAGTGTG 1494
Query 1439 AAATGGTTCAGAACCTTCCAGAAGGTCTTAGGAGAGACATCAAGTACCATCTCTGTCTAG 1498
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1495 AAATGGTTCAGAACCTTCCAGAAGGTCTTAGGAGAGACATCAAGTACCACCTCTGTCTAG 1554
Query 1499 ACTTAGTCCGGCAGGTTCCATTGTTTCAACATATGGATGATTTGGTGCTTGAGAATATAT 1558
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1555 ACTTAGTCCGGCAGGTTCCATTGTTTCAGCATATGGATGATTTGGTGCTTGAGAATATAT 1614
Query 1559 GCGACCGTGTGAAGTCTCTCATTTTCACCAAAGGAGAAACAATTCAGAAAGAAGGAGATG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GCGACCGTGTGAAGTCTCTCATTTTCACCAAAGGAGAAACAATTCAGAAAGAAGGAGATG 1674
Query 1619 CAGTGCAGAGAATGTTGTTCGTAGTGAGAGGTCATCTTCAGAGCAGTCAGTTGTTAAGAG 1678
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1675 CAGTACAGAGAATGTTATTCGTAGTGAGAGGTCATCTTCAAAGCAGTCAGTTACTAAGAG 1734
Query 1679 ACGGTGTCAAGAGCTGTTGCATGTTAGGTCCGGGAAATTTTAGTGGCGACGAGCTTCTCT 1738
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1735 ACGGTGTCAAGAGCTGTTGCATGTTAGGTCCGGGAAATTTCAGCGGCGACGAGCTTCTCT 1794
Query 1739 CGTGGTGTCTCCGACGACCCTTCGTGGAGAGGCTACCGCCGTCCTCTTCAACGCTTGTAA 1798
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1795 CGTGGTGTCTCCGACGACCCTTCGTGGAGAGGCTACCGCCTTCTTCTTCAACGCTTGTAA 1854
Query 1799 CACTTGAGACCACCGAAGCGTTTGGCCTCGACGCCGAAGACGTTAAGTACGTGACGCAAC 1858
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1855 CACTCGAGACCACCGAAGCGTTTGGCCTCGACGCCGAAGACGTTAAGTACGTGACGCAGC 1914
Query 1859 ATTTTCGTTACACTTTTGTTAACGAGAAAGTCAAACGCAGTGCCCGCTATTATTC-CCCT 1917
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1915 ATTTTCGTTACACTTTTGTTAACGAGAAAGTCAAACGTAGTGCTCGCTATTATTCTCCC- 1973
Query 1918 GGATGGCGGACTTGGGCTGCGGTTGCGGTTCAGCTCGCTTGGCGGAGGTACAAGCATAGG 1977
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1974 GGATGGCGGACTTGGGCCGCGGTTGCGGTTCAGCTAGCTTGGCGAAGGTACAAGCATAGG 2033
Query 1978 CTAACGTTGACGTCACTGTCGTTCATAAGACCGAGAAGACCGTTGTCAAGATGTGCATCG 2037
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 2034 CTAACGTTGACATCACTGTCGTTCATAAGGCCGAGAAGACCATTGTCAAGATGTGCGTCC 2093
Query 2038 TTAGGAGAAGACAAATTGAGGCTCTATACAGCAATTTTAACCTCTCCTAAACCTAATCCC 2097
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 2094 TTAGGAGAAGACAAATTGAGGCTCTATGCAGCAATATTAACCTCTCCTAAACCCAATCCC 2153
Query 2098 GACGATTTCGATGATTATTGATT 2120
|||||||| ||||||||||||||
Sbjct 2154 GACGATTTTGATGATTATTGATT 2176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105170141775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5