BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495511
Length=2447
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54260.1 | Symbols: MRE11, ATMRE11 | DNA repair and meiosis ... 2571 0.0
> AT5G54260.1 | Symbols: MRE11, ATMRE11 | DNA repair and meiosis
protein (Mre11) | chr5:22032069-22037991 FORWARD LENGTH=2574
Length=2574
Score = 2571 bits (1392), Expect = 0.0
Identities = 1480/1524 (97%), Gaps = 0/1524 (0%)
Strand=Plus/Plus
Query 2 TTACTGAGCTGCAAACACTTGCCATCATGTCTAGGGAGGATTTTAGTGATACACTTCGAG 61
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 144 TTACTGAGCTGCAAACACTTGGCATCATGTCTAGGGAGGATTTTAGTGATACACTTCGAG 203
Query 62 TACTTGTTGCAACTGATTGCCACTTGGGTTACATGGAGAAGGATGAAATAAGGCGGCATG 121
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 204 TACTTGTTGCAACTGATTGCCACTTGGGCTACATGGAGAAGGATGAAATTAGGCGGCATG 263
Query 122 ATTCGTTTAAGGCTTTTGAAGAGATATGTTCTATAGCGGAGGAAAAACAGGTGGACTTCT 181
|||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 264 ATTCATTTAAGGCTTTCGAAGAGATATGTTCTATAGCTGAGGAGAAACAGGTGGACTTCT 323
Query 182 TACTCCTTGGAGGTGATCTTTTTCATGAGAATAAACCCTCTAGAACTACGCTAGTTAAAG 241
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 324 TACTCCTCGGAGGTGATCTTTTTCATGAGAATAAACCCTCTAGAACTACGTTAGTTAAAG 383
Query 242 CCATTGAAATTCTTCGCCGCCACTGTCTTAATGATAAACCAGTGCAGTTTCAAGTAGTCA 301
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 384 CCATTGAAATTCTTCGTCGCCACTGTCTGAATGATAAACCAGTGCAGTTTCAAGTAGTCA 443
Query 302 GCGACCAGACTGTAAATTTTCAAAATGCGTTTGGTCATGTAAATTACGAGGATCCACACT 361
|||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 444 GCGACCAGACAGTAAATTTTCAGAATGCGTTTGGTCAAGTCAATTACGAGGATCCACACT 503
Query 362 TCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTGG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCAATGTAGGCTTGCCCGTGTTCAGTATTCATGGAAACCATGATGATCCAGCCGGAGTGG 563
Query 422 ACAACCTTTCTGCAATTGATATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGA 481
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACAATCTTTCTGCAATTGATATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGA 623
Query 482 TGGTTCTTGGTGGTTCAGGTGTTGGCCAGATTTCCCTCTACCCTATACTTATGAAGAAGG 541
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 624 TGGTTCTTGGTGGTTCTGGTGTTGGCCAGATTACTCTCTACCCTATACTTATGAAGAAGG 683
Query 542 GTTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTTAATAGAA 601
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 684 GCTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTCAATAGAA 743
Query 602 TGTTTCAGACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TGTTTCAGACCCCACATGCTGTCCAATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATG 803
Query 662 TTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGGGTGAAATCAAACCCCAAAA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTTCTGACTGGTTCAACATTCTGGTGCTTCATCAAAATAGGGTGAAATCAAACCCCAAAA 863
Query 722 ATGCAATAAGTGAGCACTTTCTTCCACGGTTCCTCGACTTCATTGTGTGGGGCCATGAGC 781
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 864 ATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGC 923
Query 782 ATGAATGCCTTATCGACCCCCAGGAGGTATCTGGGATGGGCTTCCACATCACACAACCAG 841
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 924 ATGAATGCCTAATCGACCCCCAGGAGGTATCTGGAATGGGCTTCCACATCACACAACCAG 983
Query 842 GATCTTCTGTGGCAACATCACTTATTGATGGGGAATCAAAGCCAAAACATGTTCTTCTCT 901
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 984 GATCTTCTGTGGCAACATCACTTATTGATGGGGAATCGAAGCCAAAACATGTTCTTCTCT 1043
Query 902 TAGAAATCAAGGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGCGAGGCCTT 961
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1044 TAGAAATCAAGGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTT 1103
Query 962 TCGAGTATACAGAGATTGTTTTAAAGGATGAAGGTGATATTGATCCCAATGATCAAAACT 1021
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1104 TTGAGTATACAGAGATTGTTTTAAAGGATGAAAGTGATATTGATCCCAATGATCAAAACT 1163
Query 1022 CAATCCTCGAGCACTTGGATAAAGTGGTCAGAAATCTAATAGAGAAAGCCAGCAAAAATG 1081
|||| || || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1164 CAATTCTGGAACACTTGGATAAAGTGGTCAGAAATCTAATAGAGAAAGCTAGCAAAAAAG 1223
Query 1082 CTGTTAACAGATCAGAGATCAAGCTCCCGTTGGTTCGAATCAAGGTAGATTACTCAGGAT 1141
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 1224 CTGTTAACAGATCAGAGATCAAACTCCCATTGGTTCGAATCAAGGTAGATTATTCTGGAT 1283
Query 1142 TTATGACGATAAATCCTCAAAGGTTTGGACAGAAATATGTGGGAAAGGTTGCAAATCCCC 1201
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1284 TTATGACGATAAATCCTCAAAGATTTGGACAGAAATATGTGGGAAAGGTTGCAAATCCCC 1343
Query 1202 AGGACATTTTAATATTTTCCAAGGCTTCTAAGAAGGGTCGGAGCGAAGCCAACATCGATG 1261
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 AGGACATTTTGATATTTTCCAAGGCTTCTAAGAAGGGTCGGAGCGAAGCCAACATCGATG 1403
Query 1262 ATTCTGAGCGGCTTCGTCCAGAGGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTG 1321
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1404 ATTCTGAGCGGCTTCGTCCAGAAGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTG 1463
Query 1322 AAAGCAACCTGAAAATGGAGATCCTGCCAGTTAACGATCTGGATGTTGCTCTTCACAATT 1381
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1464 AAAGCAACCTGAAAATGGAGATCCTTCCAGTTAACGATCTGGATGTTGCTCTTCACAATT 1523
Query 1382 TTGTGAACAAGGATGATAAACTAGCTTTCTACTCATGCGTTCAGTACAATCTTCAAGAGA 1441
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1524 TTGTGAACAAGGATGATAAACTAGCCTTCTACTCATGCGTTCAGTACAATCTTCAAGAGA 1583
Query 1442 CTCGTGGTAAACTTGCAAAGGATTCAGTTGCCCAGAAATTTGAGGAAGATGACTTGATTC 1501
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1584 CTCGTGGTAAACTTGCAAAGGATTCAGATGCCAAGAAATTTGAGGAAGATGACTTGATTC 1643
Query 1502 TTAAAGTGGGAGAGTGCTTAGAGG 1525
||||||||||||||||||||||||
Sbjct 1644 TTAAAGTGGGAGAGTGCTTAGAGG 1667
Score = 1275 bits (690), Expect = 0.0
Identities = 843/911 (93%), Gaps = 34/911 (4%)
Strand=Plus/Plus
Query 1564 GAACGTTTGAAAGATAGGTCCACTCGACCCACTGGTTCCTCGCAGTTTTTATCCACAGGA 1623
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1667 GAACGCTTGAAAGATAGGTCCACTCGACCCACTGGTTCCTCACAGTTTTTATCCACTGGA 1726
Query 1624 TTGACATCAGAGAATTTGACGAAAA-GAAGCAGTGGCATCGCGGATGCTTCGTTCAGTGA 1682
||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 1727 TTGACTTCAGAGAATTTGAC-AAAAGGAAGCAGTGGCATCGCGAATGCTTCGTTCAGTGA 1785
Query 1683 TGATGAAGACACGACTCAGATGTCTGGTTTAG-TGCCTGCCACTAGAGGACGGAGAGGTT 1741
|||||||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||
Sbjct 1786 TGATGAAGACACAACTCAGATGTCTGGTTTAGCT-CCTCCCACTAGAGGACGAAGAGGTT 1844
Query 1742 CATCCACTGCTAATACATCTCGTGGTAGAGCTAAAGCCCCAACCAGAGGAAGAGGCCGTG 1801
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1845 CATCCACTGCTAATACAACTCGTGGTAGAGCTAAAGCCCCAACCAGAGGACGAGGCCGTG 1904
Query 1802 GTAAGGCCTCAAGTGCGATGAAGCAAACCACTCTTGATGGTTCTCTTGGTTTTCGCCAGT 1861
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1905 GTAAGGCCTCAAGTGCGATGAAGCAAACCACTCTTGATAGTTCTCTTGGTTTCCGCCAGT 1964
Query 1862 CTCAAAGATCTGCTTCAGCTGCTGCTTCAGCTTCCTTCAAAAATGCTTCCACCATTGGTG 1921
|||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 1965 CTCAAAGATCTGCTTCGGCTGCTGCTTCAGCTGCCTTCAAAAGTGCTTCCACCATTGGAG 2024
Query 1922 AAGATGATGTAGATTCTCCTTCAAGCGAGGAAG-CAGAGCCTGAAGATTTTACCAAACTT 1980
|||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||| |
Sbjct 2025 AAGATGATGTAGATTCTCCTTCAAGCGAAGAAGTC-GAGCCTGAAGATTTTAACAAACCT 2083
Query 1981 GACAGCACTTCGGAGGACGATGAGAGCACTAAAGGCAAAGGACGTAAAAGACCAGCTACT 2040
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 GACAGCAGTTCGGAGGACGATGAGAGCACTAAAGGCAAAGGACGTAAAAGACCAGCTACT 2143
Query 2041 ACTAAGAGAGGCAGAGGTAGAGGTTCTGGGACTTCAAAACGTGGTAGAAAAAACGAAAGC 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 ACTAAGAGAGGCAGAGGTAGAGGTTCTGGGACTTCAAAACGTGGTAGAAAAAACGAAAGC 2203
Query 2101 TCTTCTTCACTTCATAGGCTACTCAGTAGCAAAGACAATGACGATGACGAAGATGATGAA 2160
|||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2204 TCTTCTTCACTTAATAGGCTACTCAGTAGCAAAGACGATGACGAGGACGAAGATGATGAA 2263
Query 2161 GACATAGAAAAGAAGCTTAACAAATCTCAGCCTCGGGTTACAAGGAACTATGGAGCTCTA 2220
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2264 GACAGAGAAAAGAAGCTTAACAAATCTCAGCCTCGGGTTACAAGGAACTATGGAGCTCTA 2323
Query 2221 AGAAGATAAAT-C----CA--C---A-TC----ACA--AC---GAAGCTTCATTTTTCTG 2260
||||||||||| | || | | || ||| || |||||||||||||||||
Sbjct 2324 AGAAGATAAATACATATCAAACCCCAATCTCTGACATCACAACGAAGCTTCATTTTTCTG 2383
Query 2261 TTATTTTCTAGCGACCTCTCAAGCGAAACAACTTCTGAAGAAGAGAAATTAGT-CTAACA 2319
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2384 TTATTTTCTAGCGACCTCTCAAGCGGAACAACTTCTGAAGAAGAGAAATTAGTACTAACA 2443
Query 2320 AGAGTTTTTTGAGCTG-T--ACAGAGAATTTCGTAGTGTTCTTTTATTTTCTTGCTCTTT 2376
|||||| | |||| || | ||||||||||| |||||||| |||| ||| ||||||||||
Sbjct 2444 AGAGTTCTGTGAGATGATGTACAGAGAATTTTGTAGTGTT-TTTT-TTT-CTTGCTCTTT 2500
Query 2377 TTAAAGTTTTGTTGTTGATGAATGCGGCAATATGATTACTCGTCAGTAAGAAGTCTAAAA 2436
|||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2501 TTAAGGTTACGTTGTTGATGAATGAGGCAATATGATTAA-CGTCAGTAAGAAGTCTAAAA 2559
Query 2437 CTGTAGTAACC 2447
|||||||||||
Sbjct 2560 CTGTAGTAACC 2570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121535519445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5