BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495514
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54290.2 | Symbols: CcdA | cytochrome c biogenesis protein f... 1650 0.0
> AT5G54290.2 | Symbols: CcdA | cytochrome c biogenesis protein
family | chr5:22051034-22053974 FORWARD LENGTH=1182
Length=1182
Score = 1650 bits (893), Expect = 0.0
Identities = 1089/1179 (92%), Gaps = 32/1179 (3%)
Strand=Plus/Plus
Query 1 AAGACTGTGAAGCGAGAGAACCGTT-AGACGACGGACACTTATCT----GGAGAGCCATG 55
|||||||||||||||||| |||||| ||||||||||| ||||||| |||||| ||||
Sbjct 7 AAGACTGTGAAGCGAGAGGACCGTTAAGACGACGGACGCTTATCTGGAAGGAGAGTCATG 66
Query 56 AATCTAAGTGTGAACCGATGCATCA----------C--CGGTGGATTCTCGAGCTGCAGA 103
||||| ||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 67 AATCTGAGTGTGAACCGATGCATCACCGGTGGTTTCGTCGGTGGATTCTCTAGCTGCAGA 126
Query 104 CTCAATCA-AG--AGAAAAGATGGGTTCGTGCTGCCAAGAATTGTGAGC-TGCAGAGAGA 159
|||||||| | ||||||| ||||||||||||| |||| | ||||||| || |||| ||
Sbjct 127 CTCAATCATGGTAAGAAAAGGTGGGTTCGTGCTGGCAAGCACTGTGAGCTTG-AGAGGGA 185
Query 160 GACAAGTTTAGTGTCTGATGTTGTTTGTTTTCAGAGGAAAGAGAGCAAAAGTATGAAACT 219
|| ||||||||||||||||| ||||| ||| ||||| |||||||||||| || |||||
Sbjct 186 GAGAAGTTTAGTGTCTGATGCTGTTTCTTTAGAGAGGTTAGAGAGCAAAAGCATTAAACT 245
Query 220 TGTGATGCTTGCTAGTGGTTTAGGAGTGGCAAACTTGGTAACTCTTAGCTCAGCAAAGGC 279
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 246 TGCGATGCTTGCTAGTGGTTTAGGAGTGGCGAACTTGGTAACTCTTAGCTCAGCAAAAGC 305
Query 280 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCCTTTACATTTTGGCTGAAGG 339
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 306 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCATTTACATCTTGGCTGAAGG 365
Query 340 AAGCCTTGGTGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 399
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AAGCCTTGGAGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 425
Query 400 TGTTCAGGATCAGCTTTCAGCTCTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 459
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGTTCAAGATCAACTATCAGCACTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 485
Query 460 CCTTGTGACAAGTTTGTCTCCATGTACACTAAGTGTTCTGCCTTTGACACTTGGCTATAT 519
||||||||||||| |||||||||||||||| |||||| |||| ||||||||||| |||||
Sbjct 486 CCTTGTGACAAGTCTGTCTCCATGTACACTTAGTGTTTTGCCGTTGACACTTGGTTATAT 545
Query 520 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGGCAGGTTATTGGAGATACAGTTGCTTTCGC 579
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGTCAGGTTATTGGAGATACAGTTGCTTTCGC 605
Query 580 ACTGGGATTAGCAACTACCTTAGCACTTCTTGGTATAGTAGCCTCTTTTGCCGGAAAAGC 639
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 606 ACTGGGATTAGCAACTACCTTAGCCCTTCTTGGGATAGTAGCTTCTTTTGCCGGAAAAGC 665
Query 640 CTATGGACAAATAGGACAAGGGTTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 699
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 666 CTATGGACAAATAGGACAAGGATTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 725
Query 700 TTTTAATCTCCTTGAGATAATCGAACTTCAGCTTCCATCTTTCTTTAACAACTTTGATCC 759
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 726 TCTCAATCTCCTTGAGATAATCGAACTTCAGCTTCCTTCTTTCTTTAACAACTTTGATCC 785
Query 760 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCGTATCTAGCCGGTCTCACATT 819
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 786 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCATATCTAGCCGGTCTCACATT 845
Query 820 CGCACTAGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACCCTTCTTGGCTACGTGGC 879
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 846 CGCACTTGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACTCTTCTTGGTTACGTGGC 905
Query 880 TACTTCCAGGGATCCAGTAATTGGTGGTAGCTTACTCTTAACCTATACAACAGGTTACGT 939
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 906 TACTTCCAGGGATCCAGTAATTGGTGGAAGCTTACTCTTAACCTATACAACAGGTTACGT 965
Query 940 TGCTCCACTCATCGTGGCTGCTTCTTTCGCCGGAGCTTTACAGAGCTTACTTTCCTTGCG 999
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 966 CGCTCCACTTATCGTCGCTGCTTCTTTTGCCGGAGCTTTACAGAGCTTACTTTCGTTGCG 1025
Query 1000 AAAGGTCTCTGCATGGATCAACCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1059
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AAAGGTCTCTGCATGGATCAATCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1085
Query 1060 TACTTTCTTGGATAGGCTTTTTCCTGCTGCAACTATGGTCATGTAAAAA---A-CT-ACA 1114
|||||||||||||||||||||||||||||| |||||||||||||||||| | || |||
Sbjct 1086 TACTTTCTTGGATAGGCTTTTTCCTGCTGCTACTATGGTCATGTAAAAACTTAACTTACA 1145
Query 1115 TTACTCATTTCTGCCaaaaaaaacaaaaaTGTTTGTAAT 1153
||||||||| |||||||| |||| ||||||||||
Sbjct 1146 A-ACTCATTTCGGCCAAAAA---CAAAG-TGTTTGTAAT 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5