BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495515
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54300.1 | Symbols: | Protein of unknown function (DUF761) ... 1596 0.0
> AT5G54300.1 | Symbols: | Protein of unknown function (DUF761)
| chr5:22053969-22055430 REVERSE LENGTH=1370
Length=1370
Score = 1596 bits (864), Expect = 0.0
Identities = 1125/1241 (91%), Gaps = 58/1241 (5%)
Strand=Plus/Plus
Query 64 TCTCAATGCCTCTTCTTCTCCCTAACTCTTCCTTCAAAACTACGGCCACCGTCGTAATCG 123
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 84 TCTCAATGCCTCTTCTTCTCCCTACCTCTTCCTTCAAAACGACGGCCACCGTCGTAATCG 143
Query 124 CCGGCGTTTTC-TCCATTGCAACGGCGGTGATTCTCACCGTTCCTTCTGTTTCCCATTTT 182
|||||| |||| || ||||| |||||| |||||||||| || ||||| |||||||||||
Sbjct 144 CCGGCG-TTTCATCTATTGCCACGGCGATGATTCTCACGGTCCCTTCCGTTTCCCATTTC 202
Query 183 GTGGTCTCTTGCTTTCCGATTATTTACGATAACACCGTCTTCCTCTTAAAACCACCGTAT 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GTAGTCTCTTGCTTTCCGATTATTTACGATAACACCGTCTTCCTCTTAAAACCACCGTAT 262
Query 243 CTTTACTTAGTCATCAACTGTATCATCGTCTGCATCGTCGCTACTTCTAAACTCACTCAT 302
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 263 CTTTACTTAGTCATCAACTCTATCATCGTCTGCATCATCGCTACTTCTAAACTCACTCAT 322
Query 303 AAATCGTCCTCCGTCGATGGTTCTGAGATCTCTGAAGTA---A-T--AACT-CCGGTTTT 355
||||||||||||||||||| ||||||||||| |||||| | | || | ||| |
Sbjct 323 AAATCGTCCTCCGTCGATGACTCTGAGATCTCGGAAGTAGTGACTCCAA-TACCGATACC 381
Query 356 GGTACCGGTTCATTTACCTTCTGATATCGATACCGGTTATTTAAACGTGGTTCATGTGGT 415
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 382 GGTACCGGTTCATTTACCTTCTGATATCGATTCCGGTTATTTAAACGTGGTTCATGTGGT 441
Query 416 TTCTGATTATACCGGATTTGTTGAGAAAATCGATGACGTGTCGATTAATTCAACGGTGGA 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 442 TTCTGATTATACCGGATTTGTTGAGAAAATCGATGACGTGTCGATTAATCCAACGGTGGA 501
Query 476 GGATGTCCGGAAGTTTCCAGAAGTTCAGGAGGCGGAGAAGTCAAAACAGAGAAGCGATTC 535
|| | ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 502 GGCTATCCGGAAGTTTCCAGAAGTTCAGGAGGCGGAGAAGTCGAAAGAGAGTAGCGATTC 561
Query 536 GCCGGAACTGGAGACGGAGAAGCCAACACTGAAGAATGATTCGCCGGAGATTTCGATTCT 595
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 562 GCCGGAACCGGAGACGGAGAAGCCAAAATTGAAGAATGATTCGCCGGAGATTTCGATTCT 621
Query 596 TCAGCATAGTACGAGAAAACCGCCGAGATTTCATCAGCAAAAATCTCTTAAATCTAATTC 655
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 622 GAAGCACAGTACGAGAAAACCGCCGCGATTTAATCAGCAAAAATCTCTTAAATCTAATTC 681
Query 656 AGAAGGTGGAAATAAAAAGACGGCGTTGGGAGTAGTAACAAAGCAACCGAGGAGACAAGA 715
||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||
Sbjct 682 AGAAGGTGGAAATAAAAAGACGGCGTTGGGAGT-G--ACGAAGCCACCGAGGAGACAAGA 738
Query 716 CACGCTGGAGACGACGTGGAAGAAGATAACGGAAGGACGTTCAACGCCGTTAACTAAGCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CACGCTGGAGACGACGTGGAAGAAGATAACGGAAGGACGTTCAACGCCGTTAACTAAGCA 798
Query 776 CTTGACTAAATCCGACACGTGGCAAGAAAGAGCTCACGTGCAAAGCTCACCAGAAAACAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 799 CTTGACTAAATCCGACACGTGGCAAGAAAGAGCTCACGTGCAAAGCTCACCAGAAAATAA 858
Query 836 G-A-A-GATGACAAAGTCCGAGAATTTAAATGACATATATACCCCTGCGGAGGAGGAGGA 892
| | | |||||| ||||||||||||||||| |||||| ||||||| | | | | ||||
Sbjct 859 GGAGAAGATGACCAAGTCCGAGAATTTAAAGGACATAAATACCCC--C--ACG-G-AGGA 912
Query 893 GAAGACGGTGTTGAAACGCGAGCCGTCGCCGGGACAGGAGGAGTTGAATCGGCGCGTGGA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 913 GAAGACGGTGTTGAAACGCGAGCCGTCGCCGGGACAGGAGGAGTTGAATCGGCGCGTTGA 972
Query 953 AGCGTTTATTAAGAAGTTTAACGAAGAGATGAGATTGCAAAGATTAGAATCTTTGGCTAA 1012
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AGCGTTTATAAAGAAGTTTAACGAAGAGATGAGATTGCAAAGATTAGAATCTTTGGCTAA 1032
Query 1013 ATATAATGAAATGGTAAATGAAGGGACTCGTTTGTAAATTTTGG-GGTTTTTGTTTAGGT 1071
||| |||||||||||||||| ||||||||||||||||||||| | |||||||| |||||
Sbjct 1033 ATACAATGAAATGGTAAATGGAGGGACTCGTTTGTAAATTTTCGTGGTTTTTGCTTAGGC 1092
Query 1072 GTCGGTGATGGAGAAAA-TGACGGCACAGTCGCAAAAGTTGACTTGACTCTTTTTTAGAA 1130
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1093 GTCGGTGAAGGAGAAAAATGACGGCACAGTCGCAAAAGTTGACTTGACTCTTTTTTACAA 1152
Query 1131 CCACTTAAA-GAGGTTTTTT--C------------AA-AA--T---AA--T---GCGAAA 1164
||||||||| ||| |||||| | || || | || | || |||
Sbjct 1153 CCACTTAAAAGAGTTTTTTTTTCCTTCTTCCGGGGAACAAAATTTCAAAATAATGCAAAA 1212
Query 1165 ATTGTGTTTATGATTGTTATGTTTCTTTTGGGG-CGAAAAAATCACGTTACTCGTGTGGT 1223
||||||||||||||||||||||||||||||||| ||| | | |||| |||||||||
Sbjct 1213 ATTGTGTTTATGATTGTTATGTTTCTTTTGGGGTCGAGA----C--GTTAATCGTGTGGT 1266
Query 1224 TACAAATGAAGGATTATCTGTAAAACAGTAGTGACTAGTGA 1264
||||| ||||||||||| ||| || ||||||||| ||||||
Sbjct 1267 TACAAGTGAAGGATTATATGTTAA-CAGTAGTGAGTAGTGA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5