BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495516
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54310.1 | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:2205... 2878 0.0
> AT5G54310.1 | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057052-22061270
REVERSE LENGTH=1866
Length=1866
Score = 2878 bits (1558), Expect = 0.0
Identities = 1771/1869 (95%), Gaps = 34/1869 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTTGGTCGCTCGTTCTCAAAGGACAAA-AACCAAAAGGATTTTTCTTTTTC 59
||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||
Sbjct 1 TCTCTCTCTCTTGGTCGCTCGTTCTCAAAGGGCAAAGAA--AAAAGGATTTTTAATTTTC 58
Query 60 -AAGAGGAAGAAGAAGAGAGAGATATTGAAGAGCGCTGAAGGCGGAAAAGACTGTTTTGA 118
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 59 GGAGAGGAAGAAGAAGAGAGAGATATTGAAGAGCGCTGAAGGCGGAAAAGACTATTTTGA 118
Query 119 CCTCGTCGTCTCCGTAGATCATTTTTCTTCAGCTCTTCTTCTTCCTCTTT-TGCCGATTC 177
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 119 CCTCGTCGTCTCCGTAGATCATTTTTCTTCAGCTCTTCTTCTTCCTCTTTCT-CCGATTC 177
Query 178 TCCTTC-TTCGATTTTATCTACCCGCCATGAACGAGAAAGCCAACGTTTCTAAGGAGCTT 236
|||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 178 TCCTTCTTTTGATTTTATCTATCCGCCATGAACGAGAAAGCCAACGTCTCTAAGGAGCTT 237
Query 237 AATGCCCGCCATAGAAAGATTCTTGAAGGGCTTCTTAAACATCCAGAGAACAGGGAATGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 AATGCCCGCCATAGAAAGATTCTTGAAGGGCTTCTTAAACATCCAGAGAACAGAGAATGT 297
Query 297 GCTGACTGCAAAACAAAAGGTCCAAGATGGGCTAGTGTTAATTTAGGTATCTTTATCTGC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCTGACTGCAAAACAAAAGGTCCAAGATGGGCTAGTGTTAATTTAGGTATCTTTATCTGC 357
Query 357 ATGCAATGTTCTGGGATTCACAGGAGTCTCGGGGTACACATATCGAAGGTTCGATCTGCC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGCAATGTTCTGGGATTCACAGGAGTCTCGGGGTACACATATCGAAGGTTCGATCTGCC 417
Query 417 ACTCTGGACACATGGCTCCCCGAGCAGGTTGCATTTATACAGTCGATGGGAAATGAGAAA 476
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 418 ACTCTGGACACATGGCTCCCCGAGCAGGTTGCATTTATACAGTCAATGGGAAATGATAAA 477
Query 477 GCAAATAGTTACTGGGAAGCAGAGCTACCCCCAAACTATGATAGAGTTGGAATTGAGAAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCAAATAGTTACTGGGAAGCAGAGCTACCCCCAAACTATGATAGAGTTGGAATTGAGAAT 537
Query 537 TTCATACGTGCAAAGTATGAAGAGAAGAGATGGGTTTCTAGAGGGGAAAAGGGAAGATCA 596
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TTTATACGTGCAAAGTATGAAGAGAAGAGATGGGTTTCTAGAGGGGAAAAGGCTAGATCA 597
Query 597 CCCCCTAGAGTTGAGCAGGAACGGCGGAAATCTGTGGAGAGAAGCGGGCCTGGATATGAG 656
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 598 CCTCCTAGAGTCGAGCAGGAACGGCGGAAATCTGTGGAGAGAAGTGGGCCGGGATATGAG 657
Query 657 CATGGGCACAGTAGTAGTCCTGTAAATTTGTTTGAGGAGAGGAAAACTATTCCAGCATCT 716
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CATGGACATAGTAGTAGTCCTGTAAATTTGTTTGAGGAGAGGAAAACTATTCCAGCATCT 717
Query 717 AGAACAAGAAATAATGTTGGTGCAACAAGGATAAGTCTTCCAGTGCCTCCCCAAGGACCC 776
||||||||||||||||||| |||||| || |||| |||||| ||||||||||||||||||
Sbjct 718 AGAACAAGAAATAATGTTGCTGCAACGAGAATAAATCTTCCCGTGCCTCCCCAAGGACCC 777
Query 777 GGTCAGGTTATAAAGCCACAGCGGAAAATGGAGTCTGCAGCCGCTCCAGTGGAGACGGAG 836
||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||
Sbjct 778 AGTCAGGTTATAAAGCCACAGCAGAAAATGGAGTCTGCAGCTACTCCAGTAGAGAGGGAG 837
Query 837 AAACAAGCAGTAAATGTTGCACCAGCATCAGATCCTCCAAAGGTGGATTTTGCTACTGAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAACAAGCAGTAAATGTTGCACCAGCATCAGATCCTCCAAAGGTGGATTTTGCTACTGAT 897
Query 897 CTCTTTAACATGCTATCAATGGATGAGGCAACTCC---TGCC---GATG-A------GGC 943
|| ||||||||||||||||||||||| | ||| | | || || | | |||
Sbjct 898 CTGTTTAACATGCTATCAATGGATGATTCGACTACAAATACCTCAGAGGCAACTCCTGGC 957
Query 944 -A-ACTCCTGCCGATGATAACTCATGGGCTGGCTTTCAGTCTGCTGGAAGTGGTCAAACG 1001
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GATACTCCTGCCGATGATAACTCATGGGCTGGCTTTCAGTCTGCTGGAAGTGGTCAAACG 1017
Query 1002 GCAGAGAAAATTGTCACAGCGAAGCCTGCTGAGAGCAGTTCTCCTCCAGCTCCAGCTACT 1061
|||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||
Sbjct 1018 GCAGAGAAAATTGTCACAGCCAAGCCTGCTGAGAGCAGTTCTCCTCCAGCTTCATCTTCT 1077
Query 1062 GGGATTGAGGATTTGTTTAAAGACACACCTAATTTAACAACCCAACAAGCACCAAAAGAT 1121
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 GACTTTGAGGATTTGTTTAAGGACACACCTAATTTAACAACTCAACAAGCACCAAAAGAT 1137
Query 1122 GTGAAAGGTGATATCATGAGCCTGTTTGAGAAGACGAATATAGTATCGCCTTTTGCCATG 1181
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTGAAAGGCGATATCATGAGCCTGTTTGAGAAGACGAATATAGTATCGCCTTTTGCCATG 1197
Query 1182 CATCAGCAACAGGTTGCTATGCTCGCTCAGCAGCAAGCCCTTTACATGGCTGCAGCGAAA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CATCAGCAACAGGTTGCTATGCTCGCTCAGCAGCAAGCCCTTTACATGGCTGCAGCGAAA 1257
Query 1242 GCTGCTGGAGGCACTCCAAACGGCGTGAATCAACAAGCTATTGCTAATGCTCTTAACGTA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCTGCTGGAGGCACTCCAAACGGCGTGAATCAACAAGCTATTGCTAATGCTCTTAACGTA 1317
Query 1302 GCTTCTGCAAATTGGTCAAACACCGGTGGCTACCAGATCCCCGGAATGACTAACCCCGTA 1361
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1318 GCTTCTGCAAATTGGTCAAACCCCGGCGGCTACCAGATCCCCGGAATGACTAACCCCGTA 1377
Query 1362 GGTGGTCAAGCTGATCTCCAGAAACTTATGCAAAACATGAATATGAACGCAAACATGAAC 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GGTGGTCAAGCTGATCTCCAGAAACTTATGCAAAACATGAATATGAACGCAAACATGAAC 1437
Query 1422 ATGAGACCCGCACAACCGCAAGAGAACACTCTACAATACCCATCATCCAGTTTCTACACG 1481
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ACGAGACCCGCACAACCGCAAGAGAACACTCTACAATACCCATCATCCAGTTTCTACACA 1497
Query 1482 ATGGGCCAAGCTAATCAAGTAAACGGTATGACCCCAAACTCAACCGGTAAACCTCAGTCG 1541
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGGGTCAAGCTAATCAAGTGAACGGTATGACCCCAAACTCAACCGGTAAACCTCAGTCA 1557
Query 1542 TCATCCGCAACACAACCAACAAGCACCACACCATCTTCACAATCGGGCAAAGACTTTGAT 1601
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1558 TCATCCGCAACCCAACCAACAAGCACCACACCATCTTCACAATCAGGCAAAGACTTTGAT 1617
Query 1602 TTCTCTTCCTTGATGGATGGAATGTTCACAAAACATTGATCAAGAGAGAGA--CTTTTTC 1659
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1618 TTCTCTTCCTTGATGGATGGAATGTTCACAAAACATTGATCAAGAGAGAGAGACTTTTTC 1677
Query 1660 CGAATTTGCCTTTTCATCTTTGTTCTAAATTTGAAGAACCAAAAGAATATATATACAATC 1719
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TGAATTTGCCTTTACATCTTTGTTCTAAATTTGAAGAACCAAAAGAATATATATACAATC 1737
Query 1720 ATCTCTGGACAGTT-------GTTAAACATAt-tttt-tttCCCTATGGAACTGTGTTGT 1770
|||||||||||||| ||||||||||| |||| ||| | | ||||||||||||||
Sbjct 1738 ATCTCTGGACAGTTTTTCTCTGTTAAACATATATTTTCTTTTCTT-TGGAACTGTGTTGT 1796
Query 1771 AGCCGGGCTTTGATTTATGATTTTACTCGATTGTCGAAAAATTAATAGATGTAATTCTTG 1830
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 AGCCGAGCTTTGATTTATGATTTTACTCGATTGTCGAAAAATTAATAGATGTAATTCTTG 1856
Query 1831 AGAAGAAAG 1839
|||||||
Sbjct 1857 CTAAGAAAG 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5