BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495518
Length=2778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54380.1 | Symbols: THE1 | protein kinase family protein | c... 4281 0.0
> AT5G54380.1 | Symbols: THE1 | protein kinase family protein |
chr5:22077092-22079880 REVERSE LENGTH=2789
Length=2789
Score = 4281 bits (2318), Expect = 0.0
Identities = 2642/2796 (94%), Gaps = 32/2796 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTCACAAAATCATTACTTGTTCTTCTTTTGTTCCTCTCTTGTT--AC-ACTACT 57
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1 ATGGTGTTCACAAAATCATTACTTGTTCTTCTTTGGTTCCTCTCTTGTTACACTACTACT 60
Query 58 ACTTCATCTGCTTTGTTTAATCCGCCAGACAATTACTTGATTTCTTGTGGCTCATCACAA 117
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACTTCATCAGCTTTGTTTAATCCGCCAGACAATTACTTGATCTCTTGTGGCTCATCACAA 120
Query 118 AACATAACTTTCCAAAACAGAATCTTTGTTCCAGATTCACTCCACTCTTCTCTTGTACTC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACATAACTTTCCAAAACAGAATCTTTGTTCCAGATTCACTCCACTCTTCTCTTGTACTC 180
Query 178 AAAATCGGGAACTCTTCTGTAGCAACATCATCAACTACTT-C--CAATTCAACCAATTCC 234
|||||||| ||||||||||| || | | |||||||||||| | ||||||||||||||||
Sbjct 181 AAAATCGGAAACTCTTCTGTTGC-A-A-CATCAACTACTTCCAACAATTCAACCAATTCC 237
Query 235 ATCTACCAAACCGCTCGTGTTTTCTCCGGTTTAGCTTCTTACAGATTCAAAATCACTTCT 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 ATCTACCAAACCGCTCGTGTTTTCTCCAGTTTAGCTTCTTACAGATTCAAAATCACTTCT 297
Query 295 TTAGGTCGACATTGGATCCGTCTTCATTTCTCACCAATCAAGAACTCTACTTGGAACTTA 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 298 TTAGGTCGACATTGGATCCGTCTTCATTTCTCACCTATCAACAACTCTACTTGGAACTTA 357
Query 355 ACCTGTGCTTCAATCACTGTCGTAACAGACGACTTCGTGCTCTTGAACAACTTCTCTTTC 414
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 358 ACCTCTGCTTCAATCACTGTCGTAACAGAAGACTTCGTGCTCTTGAACAACTTCTCCTTC 417
Query 415 AACAACTTCAACGGCTCTTACATCTTCAAAGAGTACACTGTCAATGTCACTTCAGAGTTC 474
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 AACAACTTCAACGGTTCTTACATCTTCAAAGAGTACACAGTCAATGTCACTTCAGAGTTC 477
Query 475 TTGACCTTAAGTTTCATTCCTTCAAACAATTCGGTGGTCTTTGTCAACGCTATTGAAGTT 534
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGACTTTAAGTTTCATTCCTTCAAACAATTCGGTGGTCTTTGTCAACGCTATTGAAGTT 537
Query 535 GTCTCTGTTCCGGATAATCTTATCCCTGATCAAGCTTTGGC-TCTAAACCCTTCAACACC 593
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 538 GTCTCTGTTCCGGATAATCTTATCCCTGATCAAGCTTTGGCGT-TAAACCCTTCAACACC 596
Query 594 ATTTAGTGGTCTCTCTCAGCTTGCGTTTGAAACAGTCTATAGATTAAACATGGGAGGACC 653
||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||
Sbjct 597 ATTTAGTGGTCTCTCTCTGCTTGCATTTGAAACAGTCTACAGATTAAATATGGGAGGACC 656
Query 654 ATTGTTGACTTCTCAAAACGATACATTGGGAAGACAATGGGATAATGATGCAGAGTATCT 713
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 ATTGTTGACTTCTCAAAACGATACATTGGGGAGACAATGGGATAATGATGCAGAGTATCT 716
Query 714 TCATGTTAATAGCTCTGTTCTTGTTGTAACAGCGAATCCTTCTTCGATTAAGTACTCTCC 773
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 717 TCATGTGAACAGCTCTGTTCTTGTTGTAACGGCGAATCCTTCTTCGATTAAGTACTCTCC 776
Query 774 TTCTGTGACTCAAGAAACAGCTCCTAACATGGTTTATGCTACTGCTGATACAATGGGTGA 833
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 TTCTGTGACTCAAGAAACAGCTCCTAACATGGTTTATGCAACTGCTGATACAATGGGTGA 836
Query 834 GGCTAATGTTGCAAGTCCAAGTTTTAATGTTACTTGGGTTCTTCCTGTTGATCCAGAGTT 893
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 TGCTAATGTTGCGAGTCCAAGTTTTAATGTTACTTGGGTTCTTCCTGTTGATCCAGACTT 896
Query 894 CAGGTACTTTGTTCGTGTTCATTTCTGTGATATTGTGAGTCAAGCTTTGAACACGCTTGT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAGGTACTTTGTTCGTGTTCATTTCTGTGATATTGTGAGTCAAGCTTTGAACACGCTTGT 956
Query 954 TTTCAATCTTTATGTGAATGATGATCTTGCTCTTGGAAGTCTTGATCTCTCTACGTTGAC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTTCAATCTTTATGTGAATGATGATCTTGCTCTTGGAAGTCTTGATCTCTCTACGTTGAC 1016
Query 1014 TAATGGTCTTAAAGTTCCTTACTTTAAGGATTTTATCTCCAATGGTTCTGTTGAATCTTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TAATGGTCTTAAAGTTCCTTACTTTAAGGATTTTATCTCCAATGGTTCTGTTGAATCTTC 1076
Query 1074 CGGTGTTTTAACCGTTAGCGTTGGACCTGATTCGCAAGCTGATATCACGAATGCGACTAT 1133
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1077 CGGTGTTTTAACCGTTAGCGTTGGACCTGATTCACAAGCTGATATCACTAATGCGACTAT 1136
Query 1134 GAATGGGTTAGAGGTTTTGAAGATTAGTAATGAAGCTAAGAGCTTAAGCGGTGTTTCTTC 1193
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1137 GAATGGGTTAGAGGTTTTGAAGATTAGTAACGAAGCTAAGAGCTTAAGTGGTGTTTCTTC 1196
Query 1194 TGTTAAGTCACTTG-TTCCTGGAGGATCAGATA-TGGGA--AAGAAGAAAGCGGTGATCA 1249
|||||||| || |||| |||||||||| | | || |||||||| || |||||||
Sbjct 1197 GGTTAAGTCG-TTACTTCCGGGAGGATCAGGTTCTAAGAGCAAGAAGAAGGCAGTGATCA 1255
Query 1250 TCGGTTCTGCAGTTGGTGCGGTTAC-TGTGGTTCTGCTGATTGCTGTTTGTTGCTATTGC 1308
| |||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1256 TTGGTTCTTTGGTTGGTGCGGTTACAT-TGATTCTGCTGATTGCTGTTTGTTGCTATTGC 1314
Query 1309 TGTTTGGCTGCTTCGAGGAAGAAGAGGTCGACGAGTCCTCAAGAAGGCGGTAATGGACAT 1368
||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TGTTTGGTTGCTTCAAGGAAGCAGAGGTCGACGAGTCCTCAAGAAGGCGGTAATGGACAT 1374
Query 1369 CCGTGGTTGCCATTACCTTTATATGGACTCTCTCAGACTCTTACCAAATCAACCGCTTCT 1428
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1375 CCGTGGTTGCCATTACCTTTATATGGACTCTCTCAGACTCTTACTAAATCAACCGCTTCT 1434
Query 1429 CATAAGAGTGCCACAGCTAGTTGCATTTCATTAGCTTCTACGCATCTTGGCCGTTGCTTT 1488
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1435 CACAAGAGTGCCACAGCTAGTTGCATTTCATTAGCTTCTACTCATCTTGGACGTTGCTTT 1494
Query 1489 ATGTTTCAAGAAATCATGGATGCTACTAATAAATTCGATGAGAGCTCGTTGCTTGGTGTT 1548
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1495 ATGTTTCAAGAAATCATGGACGCTACTAATAAGTTCGATGAGAGTTCGTTGCTTGGGGTT 1554
Query 1549 GGCGGGTTTGGTCGGGTTTATAAAGGAACTTTAGAAGACGGGACTAAAGTCGCGGTTAAA 1608
|| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGTGGATTTGGCCGCGTTTATAAAGGAACTTTAGAAGACGGGACTAAAGTCGCGGTTAAA 1614
Query 1609 AGAGGTAACCCGAGATCTGAACAAGGTATGGCTGAGTTCAGAACCGAGATCGAAATGCTG 1668
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1615 AGAGGTAACCCGAGATCAGAACAAGGTATGGCTGAGTTCAGAACAGAGATTGAAATGCTG 1674
Query 1669 TCTAAACTAAGACATCGACATCTCGTCTCTCTAATCGGTTACTGCGATGAGAGGTCCGAA 1728
|| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1675 TCAAAACTCAGACATCGACATCTCGTCTCTCTTATCGGTTACTGCGACGAGAGGTCTGAA 1734
Query 1729 ATGATTCTGGTCTATGAGTACATGGCGAATGGACCGTTGAGGAGTCATCTCTACGGAGCT 1788
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1735 ATGATACTGGTCTATGAGTACATGGCGAATGGACCGTTGAGGAGTCATCTATATGGAGCT 1794
Query 1789 GATCTTCCTCCATTGTCATGGAAACAAAGACTGGAGATATGCATCGGCGCAGCGAGAGGA 1848
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1795 GATCTTCCTCCATTGTCTTGGAAACAAAGACTCGAGATTTGCATCGGTGCAGCGAGAGGA 1854
Query 1849 TTACATTATCTACACACTGGTGCATCGCAGAGCATTATACACCGCGATGTGAAAACCACG 1908
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1855 TTACATTATCTACACACCGGTGCATCGCAGAGCATTATACACCGTGATGTTAAAACCACG 1914
Query 1909 AATATCCTACTGGACGAGAATCTAGTCGCTAAAGTTGCAGACTTTGGACTATCCAAAACC 1968
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1915 AATATCTTACTCGACGAGAATCTAGTCGCCAAAGTTGCAGACTTTGGACTATCCAAAACC 1974
Query 1969 GGCCCTTCACTCGATCAAACCCATGTGAGCACGGCGGTTAAAGGAAGCTTCGGTTATCTC 2028
|||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1975 GGCCCTTCGCTCGATCAAACACACGTGAGCACGGCGGTTAAAGGAAGCTTTGGTTATCTA 2034
Query 2029 GACCCGGAATACTTCAGGAGACAGCAGTTAACAGAGAAATCCGACGTTTATTCGTTCGGT 2088
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2035 GACCCGGAATACTTCAGGAGACAGCAGTTAACAGAGAAATCAGACGTTTATTCGTTTGGT 2094
Query 2089 GTTGTCCTAATGGAAGTTCTCTGTTGCAGACCGGCTTTAAACCCGGTATTACCGAGGGAA 2148
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 2095 GTTGTACTAATGGAAGTACTCTGTTGTAGACCGGCTTTAAACCCGGTATTACCTAGAGAA 2154
Query 2149 CAAGTGAACATAGCGGAATGGGCAATGGCGTGGCAGAAGAAGGGTCTACTCGATCAAATC 2208
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 2155 CAAGTGAACATAGCGGAATGGGCAATGGCGTGGCAGAAAAAGGGTCTGCTAGATCAAATC 2214
Query 2209 ATGGACAGTAACTTAACCGGGAAAGTGAACCCTGCCTCGCTGAAGAAATTCGGAGAAACC 2268
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 2215 ATGGACAGTAACTTAACCGGGAAGGTGAACCCTGCCTCGTTGAAGAAATTTGGAGAAACC 2274
Query 2269 GCAGAGAAATGTTTAGCAGAATACGGCGTGGACCGGCCTTCTATGGGAGATGTATTGTGG 2328
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2275 GCAGAGAAATGTTTAGCGGAATACGGTGTGGACCGGCCTTCTATGGGAGATGTATTGTGG 2334
Query 2329 AATTTGGAGTACGCGTTACAGCTCGAAGAAACATCTTCGGCTTTAATGGAACCTGATGAC 2388
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 2335 AATTTGGAGTACGCGTTACAGCTAGAAGAAACATCTTCGGCTTTGATGGAGCCTGATGAC 2394
Query 2389 AATAGCACAAACCACATTCCAGGGATCCCAATGGCGCCAATGGAGCCGTTTGATAATAGT 2448
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 2395 AATAGTACAAACCACATTCCAGGGATTCCAATGGCGCCAATGGAACCGTTTGATAACAGT 2454
Query 2449 ATGAGTATAATCGACAGAGGAG---TAAATTCGGGGACCGGGACTGATGATGATGCGGAA 2505
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2455 ATGAGTATAATCGATAGAGGAGGAGTAAATTCGGGGACCGGGACTGATGATGATGCGGAA 2514
Query 2506 GATGCGACTACTAGTGCTGTGTTTTCGCAGCTTGTTCATCCTCGTGGAAGGTAGAAGAAG 2565
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 GACGCGACTACTAGTGCGGTGTTTTCGCAGCTTGTTCATCCTCGTGGAAGGTAGAAGAAG 2574
Query 2566 AAAAACATATTTGGTGAAA-CAA-A-CAGAGACAGAGCATTGTTTGTTTTTGAGAAATTT 2622
|| | ||| || ||||||| ||| | |||||||||| |||||||||||||||| ||||||
Sbjct 2575 AACA-CAT-TT-GGTGAAAACAACAGCAGAGACAGA-CATTGTTTGTTTTTGAAAAATTT 2630
Query 2623 ACAGAAAGAAACATATTTATTGAAGACTTTTGGGTTGGAAACAACAAAATGATTCATTCA 2682
| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2631 ATAGAAAGAAAGTTATTTATTGAAGACTTTTGGGAAC-AAACAACAAAATGATTCATTCA 2689
Query 2683 GAATTCATTTTCGAATTTTTACGGTGTATTTGTTTTGTAATATAGTGAGTACTGATGTTT 2742
| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2690 GCATTTATTTTCGATTTTTTACGGTGTATTTGTTTTGTAATATAGTGAGTACTGATGTTT 2749
Query 2743 TTTAAAAGCAAATCATGAATCAGAATGTGATTATAT 2778
| ||| |||||||||||||||||||||||||||||
Sbjct 2750 T--AAA-GCAAATCATGAATCAGAATGTGATTATAT 2782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138009260193
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5