BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495519
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54390.1 | Symbols: AHL, ATAHL, HL | HAL2-like | chr5:220859... 2316 0.0
> AT5G54390.1 | Symbols: AHL, ATAHL, HL | HAL2-like | chr5:22085998-22088017
FORWARD LENGTH=1588
Length=1588
Score = 2316 bits (1254), Expect = 0.0
Identities = 1462/1562 (94%), Gaps = 15/1562 (1%)
Strand=Plus/Plus
Query 1 AAACAAAGGAGAGGAGAAGAAGCAGTGGAGAGAGAGCATGTGAA-AGAAAAGCGTGAAGC 59
||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 21 AAAAAAAGGAGAGGAGAAGAAGCAGTGGAGAGAGAGCATGTGAATA-AAAAGCGTGAAGC 79
Query 60 TTTTTGATA------TCTCTTCCTCTTCC-TT-TCCTCCGATCGATTTCGCCGGCGATGG 111
||||||||| |||||||||||||| || ||||||||| |||||||||||||||||
Sbjct 80 TTTTTGATATCTCTTTCTCTTCCTCTTCCTTTCTCCTCCGATAGATTTCGCCGGCGATGG 139
Query 112 TGGTGGAATCCTTAGAAACGGAGATTGACACGGCGGTGCGTGTGGTTCACCTCGCTTCTT 171
|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 140 CGGTGGACTCCTTAGAAACGGAGATTGACACGGCGGTGCGTGTTGTCCACCTCGCTTCTT 199
Query 172 CTCTCTGTGTTAAAGTTCAAGAGAAGCTTCATCTTCCTAATGGTGGTCACGTTAAGTCTA 231
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 200 CTCTCTGTGTTAAAGTTCAAGAGAAGCTTCATCTTCCTAACGGTGGTCACGTTAAGTCTA 259
Query 232 AAGACGATGATTCTCCTGTCACCGTCGCAGATTTTGGTGTTCAAGCAATTGTGAGCTGGG 291
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 260 AAGACGATGATTCCCCTGTCACCGTCGCTGATTTTGGTGTACAAGCAATTGTGAGCTGGG 319
Query 292 TTTTAGCTGAAGTTTTTGGTGATCAAAACCTTTCAATTGTTGCTGAAGAAGACACTGAGA 351
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTTTAGCTGAAGTGTTTGGTGATCAAAACCTTTCAATTGTTGCTGAAGAAGACACTGAGA 379
Query 352 CTCTCTCAGAGGCTGATTCTTTAGGTCTTTTAGGAGCTGTGTCGAATGCGGTTAATGATG 411
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 380 CACTCTCTGAGGCTGATTCTTTAGGTCTTTTAGGAGCTGTGTCGAATGCGGTTAATGAAG 439
Query 412 CATTGTCTGAAGCTCCGAAATACGGGCTTCCGAAGCCAGATAAACCATTGGGATCAACTG 471
||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||| || | ||
Sbjct 440 CATTGTCCGAAGCTCAGAACTACGGGCTTCCGAAGCCAGTTAAGCCATTGGGGTCTAGTG 499
Query 472 AAATTCTTAAGGCTATTAGTCGATGTAACTCCGTTGGAGGGCCTAAAGGAAGGCATTGGG 531
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 500 AAATTCTTAAGGCTATTAGTAGATGTAACTCTGTTGGAGGACCTAAAGGAAGGCATTGGG 559
Query 532 TGCTTGATCCTGTTGATGGAACATTAGGATTTGTTCGTGGGGATCAGTATGCTGTTGCTT 591
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 560 TTCTTGATCCTGTTGATGGAACGTTAGGGTTTGTTCGTGGGGATCAGTATGCTGTTGCTT 619
Query 592 TAGCTTTGATAGAGAATGGTAAAGTTCTTTTGGGGGTGCTAGGATGTCCTAATTATCCGG 651
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 620 TAGCTTTGATAGAGAATGGTAAAGTTCTTTTGGGTGTACTAGGATGTCCTAATTATCCGG 679
Query 652 TTAAGAAAGAATGCTTAAGTAATGGTTGCAACCAAGCTATGAAGACGAAATCTGTACCGG 711
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| | |
Sbjct 680 TTAAGAAAGAATGTTTAAGTAATGGTTGTAACCAAGCTATGAAGACGAAAGCTGTTGCTG 739
Query 712 GGTCAGTATCGAAAGGATGTGTCATGTATGCAAAGCGAGGAAGTGGTCAAGCGTGGATGC 771
| |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||
Sbjct 740 GTTCAGTATCGAAAGGATGTGTTATGTATGCAAAGAGAGGTAGTGGTCAAGCTTGGATGC 799
Query 772 AACCGTTGATTGTTGCAGGAATCCCTGACTCTGCAACACTCCTTAAGGTTTCCTCAGTCG 831
|||| ||||| |||| |||||| || || ||||||||||| ||||||||||| ||||| |
Sbjct 800 AACCTTTGATCGTTGGAGGAATACCAGAATCTGCAACACTTCTTAAGGTTTCTTCAGTTG 859
Query 832 ATGATCCGGCTTTAGCTACGGTTTGTGAGCCAGTAGAGAGAGCAAACTCAAACCACTTGT 891
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ATGATCCGGTTTTAGCTACAGTTTGTGAGCCAGTAGAGAGAGCAAACTCAAACCACTTGT 919
Query 892 TCACCGCAGGACTTGCCAATAGCATGGGAGTTAGAAAGCAGCCGATGCGAGTGTATAGCA 951
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 920 TCACTGCAGGACTTGCCAATAGCATGGGAGTTAGAAAGCAGCCTATGCGAGTGTATAGCA 979
Query 952 TGGTTAAATATGCAGCGATTGCACGTGGAGACGCTGAAGTGTTCATGAAGTTTGCACAGT 1011
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 980 TGGTGAAATATGCAGCGATTGCACGTGGAGACGCTGAAGTGTTTATGAAGTTTGCACAGT 1039
Query 1012 CGAGTTACAAAGAAAAGATATGGGATCATGCTGCTGGAGTTGTTATTGTGGAAGAAGCTG 1071
| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1040 CAAGTTACAAAGAGAAGATATGGGATCACGCAGCTGGAGTTGTTATTGTGGAAGAAGCTG 1099
Query 1072 GTGGTGTGGTGACTGATGCGGGCGGGAGAAACTTAGACTTCTCGAAAGGAGTTTACTTGG 1131
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1100 GTGGTGTGGTGACTGATGCGGGAGGGAGAAACTTAGACTTCTCGAAAGGTGTTTACTTGG 1159
Query 1132 AAGGTCTTGATCGTGGAATCATCGCGTGTTCTGGTCAAGTTTTACATGAGAAAATTATAG 1191
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1160 AAGGTCTTGACCGTGGAATCATCGCATGTTCTGGTCAAGTTTTACATGAGAAGATTATAG 1219
Query 1192 GTGCTGTTTATGCTAGTTGGGAATCTTCCAGTCTCTGAAAAAGCTTGTCCACAATCC-TC 1250
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1220 GTGCTGTTTATGCTAGTTGGGAATCTTCCAGTCTCTGAAAAAGCTTATCCACAATCCGT- 1278
Query 1251 AGTTTGGTGCAGCATCATCAAGCCAAAGCAAAGGGGGAACAAGGGCCACTCCGGTTTAGG 1310
||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||||
Sbjct 1279 AGTTTGGTGCAGCATCATCGAGCCAAAGCAAAGGAGGAACAAGGGCCATTACGGTTTAGG 1338
Query 1311 ATGAGCAAGGGCCAGTCTCTCTGAATGTGAATGGCGGAGAAGTAAATATAGTCAAGGAAG 1370
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 1339 ATGAGCAAGGGCCAGTTTCAATGAATGTGAATGGCGGAGAAGTAAATATAGTCGAGGAAG 1398
Query 1371 CAGCGGTAAAAGTAAGAATCTAGTTTATTTACCTATCTAAGAGTAATAAAGCTGCTGCAT 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CAGCGGTAAAAGTAAGAATCTAGTTTATTTACCTATCTAAGAGTAATAAAGCTGCTGCAT 1458
Query 1431 TTCACGAACCTTTATGTTCTATAATCTT-AATGAACAATATCATTTTTAATCTTCGTCCT 1489
|||||||||| ||||||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct 1459 TTCACGAACCCTTATGTTCTATGATCTTTAATGGATGATATCATTTTTAATCTTCGTCCT 1518
Query 1490 GTAATTTTTTCCCCTTCAAAACGCGGATTATGGATGTCGTTTTC-TGACAAAAGATAAAA 1548
||||| || | ||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 1519 GTAATAATT-CACCTTCAAAACGCGGATTATACATGTCGTTTTCCTGACAAAAGACAAAA 1577
Query 1549 AT 1550
||
Sbjct 1578 AT 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5