BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495523
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54340.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 946 0.0
> AT5G54340.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:22066831-22067565 FORWARD LENGTH=735
Length=735
Score = 946 bits (512), Expect = 0.0
Identities = 573/599 (96%), Gaps = 17/599 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAACCAATCTATGTCTTCATCAAGCTCCTCCACACACAATCATGATCAAAAACTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAGAACCAATCTATGTCTTCATCAAGCTCCTCCACACACAAACATGATCAAAAACTC 60
Query 61 AAAAGTTCCGTTGTGGTCATGGAGGTCCTGGAGGAGAAGGAGACAGTGAACAATCCGCCC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAGTTCCGTTGTGGCCATGGAGGTCCTGGAGGAGAAGGAGACAGTGAACAATCCGCCC 120
Query 121 CAGTATTATAATAAGATCTACATCTGTTACTTGTGCAAGAGAGCGTTCCCAACCCATCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CAGTATTATAATAAGATCTACATCTGTTACTTGTGCAAGAGAGCGTTCCCAACCCCTCAT 180
Query 181 GCCCTTGGCGGTCACGGAACCACCCACAAGGAGGACCGAGAAATGGAGAGGCAACAGATC 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GCCCTTGGCGGTCACGGAACCACCCACAAGGAGGACCGAGAATTGGAGAGGCAACAGATC 240
Query 241 GAGTCAAGGCTTT-TGAACAAAGATAAGTCTAACTTGCTCTTTGGTGGGTCTTCACAAGA 299
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTCAAGGCTTTCT-AACAAAGACAAGTCTAACTTGCTCTTTGGTGGGTCTTCACAAGA 299
Query 300 TGTTTTATCAAATGATAATCACCTTGGACTCTCTCTTGGTCCATTGAAGTCCATAGAAGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTTTATCAAATGATAATCACCTTGGACTCTCTCTTGGTCCATTGAAGTCCATAGAAGG 359
Query 360 TAGCAGCAGCAGCAGCAACGTTAACCCATTGCTTAATGTTGGAGTCCCTAGAGGACCCAC 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 TAGCAGCAGCAGCAACAACGTTAACCCATTGCTTAATGTTGGAGTCCCTAGAGGAACCAC 419
Query 420 AGATATGAACATGAACATGAACAACTATAGCTCACATGCTTTATCAACTGATGATATTAA 479
||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 420 AGATATGAACATGAACA--A-C---TATAGCTCACATGCTTTATCAACTGATGATATTAA 473
Query 480 TCTTGATCTTACTCTTGGTCCATCTAAGTCCATAGGAGGTAGCAACAATATCATTAATAA 539
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 474 TCTTGATCTTACTCTTGGTCCATCTAAGTCCATAGGAGATAGCAACAATATCATTAATAA 533
Query 540 C-----T--C--ATCCTTCGATGGGAATCTGATCATTCCCGTTTGTCCTCGTGTGTCTA 589
| | | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 534 CAACACTAACTCATCCTTCGATGGGAATCTGATCATTCCCGTTCGTCCTCGTGTGTCTA 592
Score = 174 bits (94), Expect = 9e-43
Identities = 98/100 (98%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 597 AAACATTCCTCCTTCTATTACTCTTCCTCATCTAAACATCAATCTTTCTCATGATTCATT 656
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 636 AAACATTCCTCCTTCTATTACTTTTCCTCATCTAAACATCAATCTTTCTCATGATTCGTT 695
Query 657 TTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCATAA 696
||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TTCTTTACAAGAGAATGGTTCGGGCTCTAGTCACTCATAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5