BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495525
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54450.1 | Symbols: | Protein of unknown function (DUF295) ... 885 0.0
AT5G54420.1 | Symbols: | Protein of unknown function (DUF295) ... 339 5e-92
AT5G54320.1 | Symbols: | Protein of unknown function (DUF295) ... 335 6e-91
AT5G53240.1 | Symbols: | Protein of unknown function (DUF295) ... 235 6e-61
AT5G53230.1 | Symbols: | Protein of unknown function (DUF295) ... 180 3e-44
AT4G13680.1 | Symbols: | Protein of unknown function (DUF295) ... 126 4e-28
> AT5G54450.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22108273-22109379 REVERSE LENGTH=1107
Length=1107
Score = 885 bits (479), Expect = 0.0
Identities = 572/613 (93%), Gaps = 22/613 (4%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTCTCAGACGGCTGTCGGAGCTTTGCCTTTCGAAACCTGCGTCCGTGAGG 60
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1 ATGTCTCTGCTTCTCAGACGGCTGTCGAAGCTCTGCCTTTCGAAACCTGCGTCCGTTAGG 60
Query 61 TCTTCTCTACTTCTCTCTAATGGCTTCTCATCATCGTCTTTGTTGCAAAGCCCTCCTTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTCTACTTCTCTCTAATGGCTTCTCATCATCGTCTTTGTTGCAAAGCCCTCCTTGT 120
Query 121 ACCATAATCGGCGCTCGTCGTTGTGGACCGTATTTTGGAAGACTCATCATTTTTAACGCT 180
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 AACATAATCGGCGCTCGTCGTTGTGGACCGTATTTTGGAACACTCATCATTTTTAACGCT 180
Query 181 AATGAAGATGACTCCACTTATTTGGAAAAGAAGGTGCCTATGGAGTTGGTAGCTAGTGAT 240
|||||||||||||||||||||||||||||||||||||| | | | | | | |
Sbjct 181 AATGAAGATGACTCCACTTATTTGGAAAAGAAGGTGCC--T--A--T-G--G--A--G-- 225
Query 241 CCAATGGTGGTGTATAATAATGCAACTGTAACAATAGGGGCATCTCATGGATGGGTAGCT 300
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 226 -C--TGGTGGTGTATAATGATGCAACTGTAACAATAGGGGCATCTCATGGATGGGTAGCT 282
Query 301 ACTGTGAACAAGGACGACGGCATTATGCGTCTCCGAGATGATTTGAACCC-TGCTGCGTC 359
|||||||||||||||||||||||| ||||||| ||||||||| | ||||| | ||| |
Sbjct 283 ACTGTGAACAAGGACGACGGCATTCTGCGTCTTCGAGATGATCTAAACCCAT-ATGCAT- 340
Query 360 CG-ATACAGATCCGAGAAGCATTCGCCTGCCTCCTCTTGTCACTCTGCCTCATTGCCAAA 418
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 341 CGTATACAGATCCGAGAAGCATTCGCCTGCCTCCTCTTGTTACTCTGCCTCATTGTCAAA 400
Query 419 CCCAGATCATCACCAACGTGTCCATGTCATGTTCTTCTCCCGAGGATGAAGACTGTGTTG 478
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 401 CCCAAATCATCACCAACGTGGCCATGTCATGTTCTTCTCCCGAGGATGAAGACTGTGTTG 460
Query 479 TTGCTGTCAAGTTCTTGGGACCTCAGCTCAGCTTTTGCAGACCCGCTCGAAGTCACTCCG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TTGCTGTCAAGTTCTTGGGACCTCAGCTCAGCTTTTGCAGACCCGCTCGAAGTCACTCCG 520
Query 539 AGTGGATCAACATCAGAATCGAAAACCCCTGCTTCTTCTCCTCCCGTGTCATGTTTTCCA 598
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 ATTGGACCAACATCAGAATCGAAAACCCCTGCTTCTTCTCCTCCCGTGTCATGTTTTCCA 580
Query 599 AGAAAGACGACAT 611
||||| |||||||
Sbjct 581 AGAAATACGACAT 593
Score = 784 bits (424), Expect = 0.0
Identities = 448/460 (97%), Gaps = 0/460 (0%)
Strand=Plus/Plus
Query 612 ACACAAGCACGATCCCGAATTGCAGAGATTGCGATTCCGAAAACTCCCCAAGTTTTCCAA 671
||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||
Sbjct 648 ACACAAGCACGATCCCGTATTGCAGAGATTGCGATTCCGAAAACTCCCCGAGCTTCCCAA 707
Query 672 GACCAAACGGGAGCTTTTGGATTCCTGCTGCATCACCGAACACTTAGTGGAGTCCCCAGC 731
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 GACCAAACGGGAGCTTTTGGATTTTTGCTGCATCACCGAACACTTAGTGGAGTCCCCAGC 767
Query 732 TGGTGAAACCTTCTTGGTTAAGTGGTACAGGAAAACTGCACCCGCACCCAAGACTATCAA 791
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 768 TGGTGAAACATTCTTGGTTAAGTGGTACAGGAAAACTGCACCCGCACGCAAGACTATCAA 827
Query 792 TGGTATGGTGAAAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGGTATGGTGAAAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAA 887
Query 852 CGCTGTTTACACTCAAGACATTGGGGATCTCTACATTTTCCTCTCAAAGTCTGAACCTTT 911
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CGCTGTATACAGTCAAGACATTGGGGATCTCTACATTTTCCTCTCAAAGTCTGAACCTTT 947
Query 912 CTGTGTCCCTGCTAGCTCCTTTCCCGGCATGTCCTCTAACCGCGTCGAGATCTTGGATGT 971
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CTGTGTCCCTGCTAGCTCTTTTCCCGGCATGTCCTCTAACCGCGTCGAGATCTTGGATGT 1007
Query 972 CAACGAAAACGTTGTTGTCGATCTGTCTGATTACTCCATGACCGGTGGAAATGCTCGTTT 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CAACGAAAACGTTGTTGTCGATCTGTCTGATTACTCCATGACCGGTGGAAATGCTCGTTT 1067
Query 1032 CGGTGCACCTTACAGTATTCCACCCCAAAAACTAGACTAG 1071
|||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGGTGCACCTTACAGTATTCCACCCCAAAAACTAGACTAG 1107
> AT5G54420.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22095804-22096079 FORWARD LENGTH=276
Length=276
Score = 339 bits (183), Expect = 5e-92
Identities = 246/277 (89%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 796 ATGGTGAAAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAACGCT 855
||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGTGAGAATGCAAACAAAAGCTGTAATGGTGTTCAAACTTGATGAAGAAGGAAACGCT 60
Query 856 GTTTACACTCAAGACATTGGGGATCTCTACATTTTCCTCTCAAAGTCTGAACCTTTCTGT 915
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 61 TTTTACACTCAAGACATTGGGGATCTCTACATTTTCATCTCAAGGTCTGAACCTTTCTGT 120
Query 916 GTCCCTGCTAGCTCCTTTCCCGGCATGTCCTCTAACCGCGTCGAGATCTTGGATGTCAAC 975
||||| |||||||||||||||||||||| ||||||| ||| ||| |||||||||| |||
Sbjct 121 GTCCCGGCTAGCTCCTTTCCCGGCATGTTCTCTAACTTCGTTGAGCTCTTGGATGTTAAC 180
Query 976 GAAAACGTTGTTGTCGATCTGTCTGATTACTCCATGACCGGTGGAAATGCTCGTTTCGGT 1035
||||||||| |||||||||||||||||||||||||| |||||| || | |||||||
Sbjct 181 GAAAACGTTACTGTCGATCTGTCTGATTACTCCATGAATGGTGGATTTGGTTATTTCGGT 240
Query 1036 GCACCTTAC-AGTATTCCACCCCAAAAACTAGACTAG 1071
||||| | | || ||||| |||||||||||||||
Sbjct 241 GCACCAGCCCAC-ATCCCACCTCAAAAACTAGACTAG 276
> AT5G54320.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22062805-22063914 FORWARD LENGTH=1110
Length=1110
Score = 335 bits (181), Expect = 6e-91
Identities = 304/362 (84%), Gaps = 14/362 (4%)
Strand=Plus/Plus
Query 251 TGTATAATAATGCAAC-TGTAACAATAGGGGCATCTCATGGATGGGTAGCTACTGTGA-A 308
||||| |||||| ||| |||||| || || |||| ||||| ||| |||||||| |||
Sbjct 242 TGTATGATAATG-AACTTGTAACCATCGGTTCATCCCATGGCTGGATAGCTACTTTGAGT 300
Query 309 CAAGGACGACGGCATTA-TGCGTCTCCGAGATGATTTGAACCCTGCTGCGTCCGATAC-A 366
| |||||||||| | || ||||||||| ||| ||| | ||||| | ||| || ||||| |
Sbjct 301 C-AGGACGACGG-ACTACTGCGTCTCCAAGACGATCTAAACCCGGTTGCATCGGATACTA 358
Query 367 GATCCGAGAA-GCATTCGCCTGCCTCCTCTTGTCACTCTGCCTCATTGCCAAACCCAGAT 425
| |||| || |||||| ||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 359 -ACCCGA-AACGCATTCCCCTGCCTCCTCTTGTAACTCTCCCTCATTGCCAAACTCAAAT 416
Query 426 CATCACCAACGTGTCCA-TGTCATG-TTCTTCTCCCGAGGATGAAGACTGTGTTGTTGCT 483
| | ||||| |||| || |||| | |||||||| |||||||||||||||||||| |||
Sbjct 417 CGTTACCAATGTGT-CATTGTC-CGCATCTTCTCCTGAGGATGAAGACTGTGTTGTGGCT 474
Query 484 GTCAAGTTCTTGGGACCTCAGCTCAGCTTTTGCAGACCCGCTCGAAGTCACTCCGAGTGG 543
|||||||| ||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 475 GTCAAGTTTTTGGGACCTCAGCTCAGCTTTTGCAGACCGGCTCAAAGTAACTCCGAGTGG 534
Query 544 ATCAACATCAGAATCGAAAACCCCTGCTTCTTCTCCTCCCGTGTCATGTTTTCCAAGAAA 603
||||||||||||||||||||||| || |||| || || |||||||||| |||||||||
Sbjct 535 ATCAACATCAGAATCGAAAACCCTTGTTTCTACTTATCTCGTGTCATGTACTCCAAGAAA 594
Query 604 GA 605
||
Sbjct 595 GA 596
> AT5G53240.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21601481-21602739 FORWARD LENGTH=1259
Length=1259
Score = 235 bits (127), Expect = 6e-61
Identities = 256/315 (81%), Gaps = 22/315 (7%)
Strand=Plus/Plus
Query 630 ATTG-CAGAGATTGCGATTCCGAAAA-CTCCCCAAGTTTTCCAAGACCAAACGGGAGCTT 687
|||| || || |||||||| | |||| || |||||| | | |||||||| ||| |||||
Sbjct 694 ATTGACA-AG-TTGCGATTTC-AAAACCTTCCCAAGCTGACAAAGACCAAGCGGAAGCTT 750
Query 688 TTGGATTCCTGCTGCATC-ACCGAACACTTAGTGGAGTC-C---CCAGCTGGTGAAACCT 742
||| |||| |||| || | | ||||||||| || ||||| | ||| | || ||||| |
Sbjct 751 TTGCATTCGTGCTTCA-CGAGCGAACACTTGGTAGAGTCACGATCCA-CGGGAGAAACTT 808
Query 743 TCTTGGTTAAGTGGTACAGGAAAACTGCACCCGCACCCAAGACTATCAATGGTATGGTGA 802
|||| |||||||||||||||| ||| | |||| ||||| | ||||| ||||||| ||
Sbjct 809 TCTTAGTTAAGTGGTACAGGAGAAC--C-CCCG---CCAAGCCCATCAAGGGTATGGCGA 862
Query 803 AAATGCA-AACAAAAACT-GTGATGGTGTTCAAACTTGATGAAAAAGGAAACGCTGTTTA 860
||| | ||||||| || | || |||||||| || || |||||||||||||||| ||
Sbjct 863 CGATG-ATAACAAAAGCTCTTCAT-GTGTTCAAGCTAGACAAAAAAGGAAACGCTGTCTA 920
Query 861 CACTCAAGACATTGGGGATCTCTACATTTTCCTCTCAAAGTCTGAACCTTTCTGTGTCCC 920
|||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 921 CACTCAAGACATCGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAACCTTTCTGTGTTCC 980
Query 921 TGCTAGCTCCTTTCC 935
|||||||||||||||
Sbjct 981 TGCTAGCTCCTTTCC 995
> AT5G53230.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21598866-21599942 FORWARD LENGTH=1077
Length=1077
Score = 180 bits (97), Expect = 3e-44
Identities = 239/306 (78%), Gaps = 15/306 (5%)
Strand=Plus/Plus
Query 640 TTGCGATTCCGAAAACTCCCCAAGTTTTCCAAGACCAAACGGGAGCTTTTGGATTCCTGC 699
||||| |||||||| || || ||| | ||||||||||||| ||||| ||||||| |||
Sbjct 649 TTGCGGTTCCGAAACCTTCCTAAGCTGACCAAGACCAAACGAAAGCTTATGGATTCTTGC 708
Query 700 TGCATCACCGAACACTTAGTGGAGTC--C--CCAGCTGGTGAAACCTTCTTGGTTAAGTG 755
| || | ||| |||| |||||||| | ||| | || ||||| ||||||||||||||
Sbjct 709 TACAAAAGAGAAGACTTGGTGGAGTCAACAACCA-CAGGGGAAACGTTCTTGGTTAAGTG 767
Query 756 GTACAGGAAAACTGCACCCGCACCCAAGACTATCAATGGTATGGTGAAAATGCAAACAAA 815
||||| ||| | | | || |||| |||||| |||| || | ||| |||||||
Sbjct 768 GTACAAGAAGA-T-C-GTCG---GCAAGGTTATCAAAGGTAGGGCCACAATAAAAACAAA 821
Query 816 AACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAACGCTGTTTACACTCAAGACATTGG 875
| || | ||||| ||||| || || ||| |||||||||||||||||||||||||||| ||
Sbjct 822 AGCTATAATGGTCTTCAAGCTAGACGAAGAAGGAAACGCTGTTTACACTCAAGACATCGG 881
Query 876 GGATCTCTACATTTTCCTCTCA-AAGTCTGAACCTTTCT-GTGTCCCTGCTAGCTCCTTT 933
||||||| ||||||| ||||| ||| || ||||| || |||| |||||||| ||| ||
Sbjct 882 AGATCTCTTCATTTTCATCTCAGAAG-CTCAACCTA-CTTGTGTTCCTGCTAGTTCCGTT 939
Query 934 CCCGGC 939
||||||
Sbjct 940 CCCGGC 945
> AT4G13680.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:7951491-7952781 REVERSE LENGTH=1291
Length=1291
Score = 126 bits (68), Expect = 4e-28
Identities = 273/368 (74%), Gaps = 30/368 (8%)
Strand=Plus/Plus
Query 625 CCCGAA-TTGCAGAGATTGCGATTCCGAAAA-CTCCCCAAGTTTTCCAAGACCAAACGGG 682
||| || ||||||| ||||| || | |||| || |||||| | ||| |||| ||||| |
Sbjct 673 CCCCAAGTTGCAGATCTTGCGGTTTC-AAAACCTTCCCAAGCTGTCCGAGACAAAACGAG 731
Query 683 AGCTTTTGGATTCCTGCTGCATC-ACCGAACACTTAGTGGAGTC----CCCAGCTGGTGA 737
| ||| |||| || |||| || | | |||||||| |||||||| ||| | ||||
Sbjct 732 AACTTCTGGAGTCGTGCTACA-CAAGTGAACACTTGGTGGAGTCAATAACCA-CCAGTGA 789
Query 738 AACCTTC-TTGGTTAAGTGGTACAGGAAAACTGCACCCGCACCCAAGACTATCAATGGTA 796
||| ||| || ||||||| ||||| ||| || ||| | | | ||| | || ||||
Sbjct 790 AACTTTCATT-GTTAAGTTGTACATGAAGACGGCA-GAG-A-TC--GAC-A--AA-GGTA 839
Query 797 TGGTGA-AAATGCAAACAAAAACTGTGATGGTGTTCAAACTTGATGAAAAAGGAAACGCT 855
| || ||| | ||||| || | | |||||||||| || || ||| |||||||||||
Sbjct 840 TTCCGAGAAA-GAAAACAGAAGCAATAATGGTGTTCAGGCTAGACGAAGAAGGAAACGCT 898
Query 856 GTTTACACTCAAGACATTGGGGATCTCTA-CATTTTCCTCTCAAAGTCTGAACCTTTCTG 914
||||||||||||||||| || |||| | |||||| ||| |||| |||||| |||||||
Sbjct 899 GTTTACACTCAAGACATCGGAGATCAA-AGCATTTTTCTCACAAATTCTGAAGCTTTCTG 957
Query 915 TGTCCCTGCTAGCTCCTTTCCCGGCATG--TCCTC-TAACCGCGTCGAGATC-TTGGATG 970
| ||||| | ||||||| || | || || || | |||| |||| | ||| ||| |||
Sbjct 958 TTTCCCTTCGAGCTCCTCTCTCAGCCTGGGTCGACCTAACTTCGTCAAAATCGTTG-ATG 1016
Query 971 TCAACGAA 978
||||||||
Sbjct 1017 TCAACGAA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5