BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495528
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54470.1 | Symbols: | B-box type zinc finger family protein... 1009 0.0
> AT5G54470.1 | Symbols: | B-box type zinc finger family protein
| chr5:22114304-22115472 REVERSE LENGTH=1085
Length=1085
Score = 1009 bits (546), Expect = 0.0
Identities = 785/891 (88%), Gaps = 53/891 (6%)
Strand=Plus/Plus
Query 1 ATTTCGCTGTCTCTTATTTGTGTCCGCAGAAGAAACgagagaagagagagagaAGC-AAA 59
||| |||||||||||||| |||||||||||||||||||||| | |||||||||||| |||
Sbjct 1 ATTACGCTGTCTCTTATTCGTGTCCGCAGAAGAAACGAGAG-A-AGAGAGAGAAGCAAAA 58
Query 60 GTCCTTACCAAGAATATTTAT-A-ACACAAACATC--gag--agag--ag----agagag 107
| ||||||||||||||||||| | ||||||||||| ||| |||| || ||||||
Sbjct 59 GACCTTACCAAGAATATTTATAACACACAAACATCTAGAGACAGAGATAGACATAGAGAG 118
Query 108 agag--agagGTTGTGGTTGTG-GAGATAAGATC---A-ATGGGGAAGAAGAAGTGCGAG 160
|||| | ||||||||||||| ||||||| ||| | |||||||||||||||||||||
Sbjct 119 AGAGCTTGTGGTTGTGGTTGTGCGAGATAATATCTAGAGATGGGGAAGAAGAAGTGCGAG 178
Query 161 TTATGTTGTGGAGTAGCGAGAATGTATTGTGAGTCAGATCAAGCGAGTTTATGTTGGGAT 220
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTATGTTGTGGTGTAGCGAGAATGTATTGTGAGTCAGATCAAGCGAGTTTATGTTGGGAT 238
Query 221 TGTGACGGTAAAGTTCACGGAGCTAATTTTCTGGTGGCGAAACACACGCGTTGTCTTCTT 280
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 TGTGACGGTAAAGTTCACGGAGCTAATTTTCTGGTGGCGAAACACATGCGTTGTCTTCTA 298
Query 281 TGTAGCGCGTGTCAGTCACACACGTCTTGGAAAGCTTCTGGCCTTCGTCTTGGCCCAACT 340
|||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 299 TGTAGCGCGTGTCAGTCACACACGCCTTGGAAAGCTTCTGGGCTGAATCTTGGCCCAACT 358
Query 341 GTTTCTATCTGTGACTCTTGTTTAGCTCGTAAGAAGAAT---AACAGCTCCGTCACC-GG 396
|||||||||||||| |||||||||||||||||||||||| ||||||||| || || ||
Sbjct 359 GTTTCTATCTGTGAGTCTTGTTTAGCTCGTAAGAAGAATAACAACAGCTCCCTCGCCGGG 418
Query 397 AAGGAGTCAGAATCTGAACC---AAGAAGAGATCATTAGTAGAGAA-GATGATGATGCTG 452
| ||| ||||||||| |||| |||||||||||||| || | || || | || ||||
Sbjct 419 AGGGA-TCAGAATCTTAACCAAGAAGAAGAGATCATTGGTTG-TAACGACG--GA-GCTG 473
Query 453 AATCTTATGATGAGGAAAGC------GAT---G-AG--GAAGAAGTGGAGAATCAGGTTG 500
| |||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 474 AGTCTTATGATGAGGAAAGCGATGAGGATGAAGAAGAAGAAGAAGTGGAGAATCAGGTTG 533
Query 501 TGCCGGCGGCGGTAGCGGAAGAACTTCCGGTGGTGAGTTCGTCGTCTTCGGTTAGTAACG 560
| ||||| ||||| | | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 534 TTCCGGCTGCGGTGGAGCAAGAACTTCCGGTGGTGAGTTCGTCGTCTTCGGTTAGTAGTG 593
Query 561 GCGACGGAGATGTGGTGGTGAAAAGGACGAGACTTGATTTGGATCTTAACCTCTCCGATG 620
| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGAAGGAGATCAGGTGGTGAAAAGGACGAGACTTGATTTGGATCTTAACCTCTCCGATG 653
Query 621 AGGAGAACGAATCTCGACCGTTGAAAAGATTATCGAGAGACGAAGCTTTGTCAAAATCAA 680
|||||||| ||||| |||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 654 AGGAGAACCAATCTAGACCATTGAAAAGATTATCGAGAGACGAAGGTTTGTCAAGATCAA 713
Query 681 CGGTTGTGATGAA---CTCAATTGAGAAAGTACACGGAGGGAGGAGAAAATCAGAGGGAT 737
| ||||||||||| |||||| | |||| |||||||||||||||||||| |||||||||
Sbjct 714 CTGTTGTGATGAATAGCTCAATCGTGAAATTACACGGAGGGAGGAGAAAAGCAGAGGGAT 773
Query 738 GTGATACATCATCATCGTCTTCATTTTATTGAAATCGCCAACAAAAGTAGAGATTTTTAG 797
||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | ||
Sbjct 774 GTGATACATCATCGTCGTCTTCGTTTTATTGAAATCGCCAAGGAAAGTAGAGATTGT-AG 832
Query 798 CCGTTGATGATTCTTTCGTT-GGTTGAT-AGATTAATTCTCACCGTTCATT 846
|||||||||||||||| ||| ||||||| |||||||| |||| ||||||||
Sbjct 833 CCGTTGATGATTCTTTTGTTTGGTTGATTAGATTAATCCTCATCGTTCATT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5