BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495530
Length=451
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54490.1 | Symbols: PBP1 | pinoid-binding protein 1 | chr5:2... 584 2e-166
AT4G27280.1 | Symbols: | Calcium-binding EF-hand family protei... 279 1e-74
> AT5G54490.1 | Symbols: PBP1 | pinoid-binding protein 1 | chr5:22121404-22121931
FORWARD LENGTH=528
Length=528
Score = 584 bits (316), Expect = 2e-166
Identities = 368/392 (94%), Gaps = 8/392 (2%)
Strand=Plus/Plus
Query 36 TAATGGCGTCGCCTAAATCCCCAACAAGACCAAACCAAGAAAATCAAGAACC-CAAGTTC 94
||||||| || ||||||||| |||||||||||||||||||||| |||||||| | |||||
Sbjct 53 TAATGGCATCTCCTAAATCCTCAACAAGACCAAACCAAGAAAACCAAGAACCTC-AGTTC 111
Query 95 CAAGATTTCTTCCCAACAATGGCCGGTAAACTCGGTGGAGAAGGTCTAATCGAAGAGCTT 154
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||
Sbjct 112 CAAGATTTCTTCCCAACAATGGCAGGAAAACTCGGTGGAGAAGGTCTGATCGAAGAGATT 171
Query 155 TGTAAAGGGTTCGAGCTTCTTATGGATAAAGACAAAGGAGTCATCACATTCGAGAGCTTA 214
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 TGCAAAGGGTTCGAGCTTCTTATGGACAAAGACAAAGGAGTCATCACATTCGAGAGCTTA 231
Query 215 CGAAGAAACGCATCGACGGTTCTTGGACTTGGAGATCTAACGGATGACGATGTTCGATGC 274
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 232 CGAAGAAACGCATCGACGGTTCTTGGACTCGGAGATCTAACGGACGACGATGTTCGATAT 291
Query 275 ATGATCAACGAAGGAGATTGTGATCGAGACGGTGCGTTGAATCAGATGGAGTTTTGTGTG 334
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATGATCAACGAAGGAGATTTTGATCGAGACGGTGCGTTGAATCAGATGGAGTTTTGTGTG 351
Query 335 CTCATGTTTAGACTTAGTCCTGAACTT-ATGGAAGCGTCACGGTGTGTTGTGACGGAGGT 393
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 352 CTCATGTTTAGACTTAGTCCTGAA-TTGATGGAAGCGTCACGGTGTGTTGTGACGGAGGT 410
Query 394 GATCAAGGAAGAGTTTT-CCG--ATT-ATAGA 421
|||| |||||||||||| ||| ||| |||||
Sbjct 411 GATCGAGGAAGAGTTTTACCGGCATTGATAGA 442
> AT4G27280.1 | Symbols: | Calcium-binding EF-hand family protein
| chr4:13663576-13664240 REVERSE LENGTH=665
Length=665
Score = 279 bits (151), Expect = 1e-74
Identities = 311/386 (81%), Gaps = 20/386 (5%)
Strand=Plus/Plus
Query 34 TCTAATGGCGTCGCCTAAA-TC-CCCAACAAGACCAAACCAAGAAAATCAAGAACCCAAG 91
|||||||||||| || ||| || ||| |||||||||| |||| |||| | | |||||||
Sbjct 75 TCTAATGGCGTCACC-AAAGTCACCC-ACAAGACCAACCCAACAAAACCCACAACCCAAT 132
Query 92 TTCCAAGA-TTTCTTCCCAACAATGGCCGGTAAA-CTCGGTGGAGAAGGTCTAATCGAAG 149
||||| || |||||| || || |||||||| ||| || || || |||||||| |||| ||
Sbjct 133 TTCCACGATTTTCTT-CCTACCATGGCCGG-AAACCTAGGCGGTGAAGGTCTGATCGGAG 190
Query 150 AGCTTTGTAAAGGGTTCGAGCTTCTT-ATGGATAAAGACAAAGGAGTCATCACATTCGAG 208
|||| || || || ||||||||| || ||||| | ||| ||||| |||||||| ||||||
Sbjct 191 AGCTATGCAACGGCTTCGAGCTT-TTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAG 249
Query 209 AGCT-TACGAAGAAACGCAT-CGACGGTTCTTGGACTT-GGAGATCTAACGGATGACGAT 265
|| | | ||| | ||||| | || |||||| ||| || |||||| | || ||||| |||
Sbjct 250 AG-TCTCCGACGTAACGC-TGCGGCGGTTC-TGGGTTTAGGAGATTTGACTGATGAAGAT 306
Query 266 GTTCGATGCATGATCAACGAAGGAGATTGTGATC-GAGACGGTGCGTTGAATCAGATGGA 324
|| || || ||||| || ||||| |||| ||| | | |||||||||||||||||||||||
Sbjct 307 GTCCGGTGTATGATTAAAGAAGGTGATTTTGA-CTGCGACGGTGCGTTGAATCAGATGGA 365
Query 325 GTTTTGTGTGCTCATGTTTAGACTTAGTCCTGAACTT-ATGGAAGCGTCACGGTGTGTTG 383
|||||||||| | |||||||| ||||| ||||| || ||||||||||| |||||| | |
Sbjct 366 GTTTTGTGTGTTGATGTTTAGGCTTAGCCCTGAT-TTGATGGAAGCGTCGCGGTGTCTCG 424
Query 384 TGACGGAGGTGATCAAGGAAGAGTTT 409
| |||||||| || |||| ||||||
Sbjct 425 TCACGGAGGTCATTGAGGAGGAGTTT 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21464328823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5