BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495531
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54500.2 | Symbols: FQR1 | flavodoxin-like quinone reductase... 952 0.0
> AT5G54500.2 | Symbols: FQR1 | flavodoxin-like quinone reductase
1 | chr5:22124511-22126504 FORWARD LENGTH=967
Length=967
Score = 952 bits (515), Expect = 0.0
Identities = 613/656 (93%), Gaps = 24/656 (4%)
Strand=Plus/Plus
Query 1 AATGGAAAAAGGATAAAGAACACAGATCATCTTCTCCACGACTCCACTCTATAAATACGC 60
||||||||||||||||||| ||||||||||||||| || | | ||||||||||||||
Sbjct 3 AATGGAAAAAGGATAAAGAGCACAGATCATCTTCT--AC-A-T---CTCTATAAATACGC 55
Query 61 TTTCTGCATTTTCGGATCGTTGAACAtctctctctctctctctctctctctctctctctc 120
||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 56 TTTCTACATTTTCGGATCGTTGAACA----AC-ATCTCTCTCTCTCTCTCTCTCTCTCTC 110
Query 121 tAAACCCATTAAAGT-ATTTAGCT--TC----A---T--AGAAGAACACTTCGATGGCGA 168
||||||||||||||| |||||||| || | | ||||||||||||| |||||||
Sbjct 111 TAAACCCATTAAAGTAATTTAGCTCCTCATAGATTCTCGAGAAGAACACTTCCATGGCGA 170
Query 169 CTAAAGTGTATATCGTGTACTACTCTATGTATGGTCATGTTGAGAAATTGGCTGAAGAAA 228
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CTAAAGTATATATCGTGTACTACTCTATGTATGGTCATGTTGAGAAATTGGCTGAAGAAA 230
Query 229 TAAGGAAAGGAGCTGCTTCTGTTGAAGGTGTTGAAGCTAAACTATGGCAGGTACCAGAGA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TAAGGAAAGGAGCTGCTTCTGTTGAAGGTGTTGAAGCTAAACTATGGCAGGTACCAGAGA 290
Query 289 CGCTTCACGAAGAAGCACTCTCTAAGATGAGCGCACCACCAAAGAGTGAATCCCCAATCA 348
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CGCTTCACGAAGAGGCACTCTCTAAGATGAGCGCACCACCAAAGAGTGAATCCCCAATCA 350
Query 349 TTACCCCCAACGAGCTAACTGAAGCTGATGGGTTTGTCTTTGGTTTCCCAACAAGATTTG 408
| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TAACCCCGAATGAGCTAGCTGAAGCTGATGGGTTTGTCTTTGGTTTCCCAACAAGATTTG 410
Query 409 GTATGATGGCTGCTCAGTTCAAAGCCTTTTTGGATGCAACCGGTGGACTCTGGAGGACTC 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 411 GTATGATGGCTGCTCAGTTCAAAGCCTTTTTGGATGCAACCGGTGGACTCTGGAGGGCTC 470
Query 469 AGTCACTCGCCGGTAAACCAGCTGGTATCTTCTACAGCACTGGCTCTCAAGGTGGTGGCC 528
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGGCACTCGCCGGTAAACCAGCTGGTATCTTCTACAGCACTGGCTCTCAAGGTGGTGGCC 530
Query 529 AAGAAACCACCGCATTGACGGCGATAACTCAGCTGGTTCACCATGGGATGTTGTTTGTCC 588
|||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 531 AAGAAACCACAGCATTGACGGCAATAACTCAGCTGGTTCACCACGGGATGTTATTTGTCC 590
Query 589 CAATCGGTTACACATTTGGTGCGGGAATGTTCGAAATGGAGAATGTGAAAGGTGGA 644
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 591 CAATCGGTTACACATTTGGCGCGGGAATGTTCGAAATGGAGAATGTGAAAGCTGGA 646
Score = 488 bits (264), Expect = 4e-137
Identities = 301/317 (95%), Gaps = 9/317 (3%)
Strand=Plus/Plus
Query 697 AGCTGGAGCTACAGCAAGCATTTCACCAAGGCAAGTACATTGCCACCATCACCAAGAAGC 756
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 640 AGCTGGAGCTACAGCAAGCATTTCACCAAGGCCAGTACATTGCCAGCATCACCAAGAAGC 699
Query 757 TCAAGGGATCTACTGCTTAGAGCTTGAAAAGATTATGGTATCAATAAGATaaaaagaaaa 816
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 700 TCAAGGGATCTACTGCTTAGAGCTTAAAAAGATTATGGTATCAATAAGAAAAAAAGAAAA 759
Query 817 aaaCAGtttggttctgctttttatatctttatattctttctctttgaatttgggggcttt 876
||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||
Sbjct 760 AAACAGTTTGGTTCTGC--TTT-T-T-TTTATATTCTTTCTCTTTGAATTTGGGGGCTTT 814
Query 877 tgtgatttttcgggtttAATTATCTTAAAATACTTGATATTATTTCACAGCAATAATTCT 936
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 815 TGTGATTTTTCGGGTTTAATTATCTTAAAATACATGATATTATTTCACAGCAATAATTCT 874
Query 937 TGTCTTGGTTTTACGTATAGAT-AT---GTATGATTTGTACTTGTGTTACACTCCAAACA 992
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 875 TATCTTGGTTTTACGTATAGATGATAATGTATGATTTGTACTTGTGTTACACTCCAAACA 934
Query 993 AAAGATTCGTCGTCATT 1009
|||||| ||||||||||
Sbjct 935 AAAGATGCGTCGTCATT 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5