BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495533
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54530.1 | Symbols: | Protein of unknown function, DUF538 |... 1061 0.0
> AT5G54530.1 | Symbols: | Protein of unknown function, DUF538
| chr5:22152725-22154429 FORWARD LENGTH=770
Length=770
Score = 1061 bits (574), Expect = 0.0
Identities = 670/714 (94%), Gaps = 16/714 (2%)
Strand=Plus/Plus
Query 1 GCCGTaaaaaaaTAAAACTTT-TAtctctctctctctctctctATCAGTGAAAAGCTATG 59
||||| |||||| |||||||| | ||| ||||||||||||||| ||||||||||||||||
Sbjct 1 GCCGTGAAAAAA-AAAACTTTCTCTCTTTCTCTCTCTCTCTCTCTCAGTGAAAAGCTATG 59
Query 60 AACAatctcatctcccgtatgatccttctcttcatcactctcctcctctctttctctctc 119
||||| |||||||||||||||||||||||| ||| |||||||| ||||||||| || |||
Sbjct 60 AACAAACTCATCTCCCGTATGATCCTTCTCCTCACCACTCTCCGCCTCTCTTTATCCCTC 119
Query 120 tcctcGCCGTATTATCCAACGGTCCATGAGGTTCTCCGATCAAAAGGTCTCCCGGCGGGA 179
|||||||||| || ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 120 TCCTCGCCGTCGTACCCAACGGTCCACGACGTTCTCCGATCAGAAGGTCTCCCGGCGGGA 179
Query 180 CTTTTACCGCAAGAAGTTGATTCTTATATTCTTCACAACGACGGTCGTCTCGAGGTTTTC 239
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTTTACCTCAAGAGGTTGATTCTTATATTCTTCACAACGACGGTCGTCTCGAGGTTTTC 239
Query 240 CTCGCGGCGCCGTGTTACGCTAAATTCGAGACGAACGTGCACTTTGAAGCCGTCGTGAGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTCGCGGCGCCGTGTTACGCTAAATTCGAGACGAACGTGCACTTTGAAGCCGTCGTAAGA 299
Query 300 GCGAATCTCAGCTATGGGAGCCTCATCGGAGTAGAAGGGCTATCGCAGAAAGAGCTCTTC 359
| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 300 GGGAATCTGAGCTATGGGAGCCTCGTCGGAGTAGAAGGGCTATCGCAAAAAGAGCTCTTC 359
Query 360 TTGTGGCTTCAGGTGAAAGATATCGTCGTCGAGAATCCAAATTCCGGCGTCATTGTGTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGTGGCTTCAGGTGAAAGATATCGTCGTCGAGAATCCAAATTCCGGCGTCATTGTGTTT 419
Query 420 GATATCGGCGTTGCTTTTAAACAGCTTTCGCTCTCTCTCTTTGAAGACCCACCCAAGTGT 479
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 420 GATATCGGCGTTGCTTTTAAACAGCTTTCGCTTTCTCTCTTTGAAGACCCTCCCAAGTGT 479
Query 480 AACCCTGACGGTGTTTtgaagaaaaagatgagaagagatagaggatttgaagctcaaata 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAACCTGACGGTGTTTTGAAGAAAAAGATGAGAAGAGATAGAGGATTTGAAGCTCA---- 535
Query 540 tgagaagtagagagaaagaCCTAGAGGAGCCCGATTGTCCATTTGAAAATTTCC-AAATT 598
|| | ||||||||||||||||| ||| || |||||||||||||||||| || |||||
Sbjct 536 -GA-A-GTAGAGAGAAAGACCTA-AGG--CCATATTGTCCATTTGAAAATT-CCTAAATT 588
Query 599 GTAAACTAATCAGAAAGATTAGTATGCTAATTATATGAGTAGAATAGAATTTTGTTTGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GTAAACTAATCAGAAAGATTAGTATGCTAATTATATGAGTAGAATAGAATTTTGTTTGAG 648
Query 659 AGTTCTTGTAGAA-ATGAGACTCCCCATGTTCTATTCTATGTTTTGTGTTTTAG 711
|||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGTTCTTGTA-AAGATGAGACTCCCCATGTTCTATTCTATGTTTTGTGTTTTAG 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5