BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495534
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54540.1 | Symbols: | Uncharacterised conserved protein (UC... 1618 0.0
> AT5G54540.1 | Symbols: | Uncharacterised conserved protein (UCP012943)
| chr5:22156498-22158054 FORWARD LENGTH=1197
Length=1197
Score = 1618 bits (876), Expect = 0.0
Identities = 1026/1094 (94%), Gaps = 28/1094 (3%)
Strand=Plus/Plus
Query 1 ATCATGGGAGGAGGAAGAGCTATGGCGACGGCAGCGAAGGTTGCTGGAATCGGAGTTGCT 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 104 ATCATGGGAGGAGGAAGAGCTATGGCGACGGCGGCGAAGGTTGCTGGAATCGGAGTTGGT 163
Query 61 AAAGGAGGATTCAGGGGAGGATTTGGATTTCCTCCGGCGACTGAGCAGTTTCGGGTTAAA 120
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 164 AAAGGAGGATTCA--AG-GGATTTGGATTTCCTCCGGCGACTGAGCAGTTTCGTGTTAAA 220
Query 121 ACCGCGGC-G--GCGGCGGCGTCTAAACCGGTTTCGGCTTCGATTTCATCGGCGGTTCAT 177
|||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 221 ACCGCGGCGGCTGCGGCGTCGTCTAAACCGGTTTCGGCTTCGATTACATCGGCGGTTCAT 280
Query 178 CCTTCTGTTGAAGAAGATGGGATGATTATGCAGAGACCGGTTTGGGATGATTGGGAATTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CCTTCTGTTGAAGAAGATGGGATGATTATGCAGAGACCGGTTTGGGATGATTGGGAATTT 340
Query 238 GCTGAAGAAGAGCCAATTCCTAGAGTTGTTTTTAGCAAACCTCCTAGTCTTGAAGAGGCT 297
||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 341 GCTGAAGAAGAACCGATTCCTAGGGTTGTTTTTAGCAAACCTCCTAGTCTTGAAGAAGCT 400
Query 298 AAAGAAGCTACTGAGGATCTGAAAGAAGCAATTAATATGGTGTATATGTCATCTCCAAAG 357
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 401 AAAGAAGCTACTGAAGATCTTAAAGAAGCAATTAATTTGGTGTATATGTCATCTCCAAAG 460
Query 358 TCGTCTGCTGCTATGGAAGGATCAAATGATGGTGG-TGCTGTTTCCAAAATGCTCTCAGG 416
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 461 TCGTCTGCTGCTATGGAAGGATCAAATGATGGTGGCT-CTGTTTCCAAAATGCTCTCTGG 519
Query 417 TTTTCAATCTTCTGAGAACAGAGCTGTTGAATCAGCTGTTCCACAAGTTGCTCTTCAAGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TTTTCAATCTTCTGAGAACAGAGCTGTTGAATCAGCTGTTCCACAAGTTGCTCTTCAAGC 579
Query 477 ATTTGCTTTTCTGAGTGAAAACACCGCTGCACAGACTGTTGTTGCTTCCATTGCGTGTGA 536
|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 580 ATTTGCTTTTCTAAGTGAGAACACTGCTGCGCAGACTGTTGTTGCTTCCATTGCGAGTGA 639
Query 537 CCCAAAAGTATGGGATGCTGTTATGGAGAATAAGGATCTCATGAAATTTCTCCAGACCAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 640 CCCAAAAGTATGGGATGCTGTTATGGAGAATAAGGATCTCATGAAATTTCTTCAGACCAA 699
Query 597 TAATACTGCTGCTTCCTCTCAAGTTGAATCTGACAATGACGACCAATCTGAACGTTCGAG 656
|| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CAAAACCGCTGTTTCCTCTCAAGTTGAATCTGACAATGACGACCAATCTGAACGTTCGAG 759
Query 657 CACGACGGAGTGTGAAGTCATGGAAACTAAGCCGATGGAACTCTTAGAGATTCTGCAGGA 716
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 760 CACGACTGAGTGTGAAGTCGTGGAAACTAAGCCAATGGAACTCTTAGAGATTCTGCAGGA 819
Query 717 CATGAAGCTAAAAGCTGTTCGATTGATGGAAAATGTCTCTTCTTACTTTGGGGACTTGTT 776
||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct 820 CATGAAGCTAAAAGCTGTTCGGTTGATGGAAAATGTATCTTCCTACTTTGGTGACTTGTT 879
Query 777 TGGGTTAGGATCAGTTACAGAGGATGGGAAAGACAAGAAGCAGACGTTGTTCAACGACCC 836
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 880 TGGGTTAGGATCAGTTACAGAAGATGGAAAAGACAAGAAGCAGACGTTGTTCAATGACCC 939
Query 837 TCGTTCTCTGTTTGGATTAGCTGTGGTTGTCATCTTCATGGTAGTTTTAAAACGTGCTTA 896
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 940 TCGTTCTCTGTTTGGATTAGCTGTGGTTGTTATCTTCATGGTAGTTTTAAAACGTGCTTA 999
Query 897 AGGTCTCTTGTTCCTGAATTCGCCGATATAGCGGAAAAACAACTACGTACT-T-TGT--- 951
|| |||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1000 AGATCTCTTGTTCCTGAATTCGCCGATATAGCGGAAAAACAACTACGTACTCTGTGTTAT 1059
Query 952 -G---A---TCT----CATTCCTTTGCTTTCTTATCGTTTAAACTCTGTTTTTTGTTTAA 1000
| | ||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1060 CGTTTAAACTCTGTTTCATTCCTTTGCTTTGTTATCGTTTAAACTCTGTTTTTTGTTTGA 1119
Query 1001 TTGGAATGGTTTGGAACCGTC-TCTGGATCTTTTCATA-TTATAAAAATAAAAAGATCCT 1058
|||||||| |||||||||||| | |||||||||||||| || || |||||||||||||||
Sbjct 1120 TTGGAATGATTTGGAACCGTCAT-TGGATCTTTTCATAATT-TATAAATAAAAAGATCCT 1177
Query 1059 TTGGATGTTTTATC 1072
||||||||||||||
Sbjct 1178 TTGGATGTTTTATC 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5