BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495536
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:2216... 2521 0.0
AT5G54569.1 | Symbols: | other RNA | chr5:22167349-22170538 FO... 350 3e-95
> AT5G54570.1 | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235
REVERSE LENGTH=1608
Length=1608
Score = 2521 bits (1365), Expect = 0.0
Identities = 1531/1609 (95%), Gaps = 20/1609 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTTTAATGAGACTAGTCCTGGTTCTGCTTCCGTTCTTGGTCGTCTCCTTCGTG 60
|||||||||||||||||||| ||| | |||||| |||||||||| ||||||| ||||||
Sbjct 1 ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCGTTCTTCGTCGTCTTCTTCGTA 60
Query 61 CCTCTTGATCATGTTTCGTCAGAATCTATCAGCAGAGCAGATTTTCCAGATGGGTTTGTA 120
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 CCTCTTGATCACGTTTCTTCAGAATCTATCAGCAGAGCAAATTTTCCAGATGGATTTGTA 120
Query 121 TTCGGAACAGCCTCTTCAGCTTACCAGTTCGAAGGAGCTGTGAAAGAAGGAAACAAAGGA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGGAACAGCTTCTTCAGCTTACCAGTTCGAAGGAGCTGTGAAAGAAGGAAACAAAGGA 180
Query 181 CAAAGCATATGGGACACTTTCACG-A--AGAAACCAGGAAAGATACTGGATTTCAGCAAT 237
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 181 GAAAGCATATGGGACACTTTCACGAAGGAGAAACCAGGAAAGATACTGGATTTCAGCAAT 240
Query 238 GCGGATACTACGGTCGATCAATATCACAGGTTTCATAGTGACATAGACCTGATGAAAGAT 297
|||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 241 GCGGATACTACGGTTGATCAATATCATAGGTTTCACAATGACATAGACCTGATGAAAGAT 300
Query 298 CTGAGAATGGATGCTTATAGATTCTCTATATCTTGGTCAAGAATATTCCCTAATGGAACA 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGAGAATGGATGCTTACAGATTCTCTATATCTTGGTCAAGAATATTCCCTAATGGAACA 360
Query 358 GGGGAAGTGAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTCTTTTAGCC 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGGAAGTAAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTCTTTTAGCC 420
Query 418 AAAGGAATCAAACCTTACGTGACATTGTATCACTGGGATCTCCCACAAGCTTTAGAAGAC 477
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AAAGGAATCAAACCTTATGTGACATTGTATCACTGGGATCTCCCACAAGCCTTAGAAGAC 480
Query 478 AGATATGAAGGATGGCTAAGCAGAGAAGTCGTGGAAGATTTTGAGCATTATGCATTCACC 537
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 AGATATGAAGGATGGCTAAGCAGAGAAGTGGTGGATGATTTTGAGCATTATGCATTCACC 540
Query 538 TGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTATCAATGAGCCTCATGGG 597
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGGG 600
Query 598 GTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCACTTCTAGGA 657
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 601 GTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCACTTCTGGGA 660
Query 658 CATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTCATAACATT 717
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 CATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTCATAACATT 720
Query 718 CTCTTGTCTCATGCTGCTGCTTACCACACCTACCAGAGAAACTTCAAGGAGAAACAACGT 777
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 721 CTGTTGTCTCATGCTGCTGCTTACCATACCTACCAAAGAAACTTTAAGGAGAAACAACGT 780
Query 778 GGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATGTCTGATTGTGATGAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATGTCTGATTGTGATGAG 840
Query 838 GACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGATTGGATGGTTTATGGATCCTCTA 897
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 GACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGCTTGGATGGTTTATGGATCCTCTA 900
Query 898 ATCAATGGAGACTATCCAGCTTCAATGAAGAGTCTAGTGGAAGAGAGACTACCTAAGATA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATCAATGGAGACTATCCAGCTTCAATGAAGAGTCTAGTGGAAGAGAGACTACCTAAGATA 960
Query 958 ACACCAGAGATGTCTCAATCTATAAAAGGGGCATTTGATTACGTGGGAATCAACCACTAC 1017
||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACACCAGAGATGTATAAAACCATAAAAGGGGCATTTGATTACGTGGGAATCAACCACTAC 1020
Query 1018 ACCGCATTATACGCAAGGAATGACAGAACTAGGATAAGGAAACTGATACTGCAGGATGCT 1077
||| |||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1021 ACCACATTATACGCGAGGAATGACAGAACTAGGATAAGGAAACTGATTCTACAAGATGCT 1080
Query 1078 TCTTCTGATTCAGCGGTTATTACAAGCTCTTTTCGTGGAGGAGTAGCTATAGGAGAAAAA 1137
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1081 TCTTCTGATTCAGCCGTGATTACAAGCTCTTTTCGTGGAGGAGTAGCTATAGGAGAAAGA 1140
Query 1138 GCAGGATCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGTGTATCTT 1197
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 GCAGGGTCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGTGTATGTT 1200
Query 1198 AAAGACATGTATGGAAACCCACCTGTATTCATCACAGAAAACGGCATGGATGAGAAAAAC 1257
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAAGACATATATGGAAACCCACCTGTATTCATCACAGAAAACGGCATGGATGAGAAAAAC 1260
Query 1258 AAG-CCATTCATAGACATGGAGAAAGCATTAAAAGATAACAAGAGGATTAGCTTCCACAG 1316
| | ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 1261 A-GTCCATTCATAGACATGGAAAAAGCATTAAAAGATGACAAGAGGATTGGCTTCCACAG 1319
Query 1317 AGATTACCTCTCAAACTTATCAGCTGCCATAAGGAATGATGAATGCGATGTAAGAGGATA 1376
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1320 AGATTACCTCTCAAACTTATCAGCTGCCATAAGGAATGATGAATGCGACGTAAGAGGATA 1379
Query 1377 TTTTGTGTGGTCATTGCTAGACAATTGGGAATGGAACTCAGGATACACGGTCCGGTTCGG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 TTTTGTGTGGTCATTGCTAGACAATTGGGAATGGAACTCAGGATACACGGTCCGGTTTGG 1439
Query 1437 GATCTACTACGTTGACTACAAGAACAATCTCACAAGGATACCTAAAGCCTCTGCTCGATG 1496
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1440 GATCTACTATGTTGACTACAAGAACAATCTCACAAGGATACCTAAAGCTTCTGCTCGATG 1499
Query 1497 GTTTCAAAGAATACTTAGCGGCTCTACTTCA---TCAGATTCCAGCAAGCT-A--C-A-- 1547
|||||||| |||||||||||||||| ||||| ||||||||||||||||| | | |
Sbjct 1500 GTTTCAAACAATACTTAGCGGCTCTTCTTCAACATCAGATTCCAGCAAGCTTATTCTACT 1559
Query 1548 GGA-G-G-CAACAGAACAA-AA-A-GAGTACAAATTTCAAGAGAAATGA 1590
||| | | ||||||||||| || | ||||||||||| ||||||||||||
Sbjct 1560 GGAAGAGGCAACAGAACAACAACAAGAGTACAAATTCCAAGAGAAATGA 1608
> AT5G54569.1 | Symbols: | other RNA | chr5:22167349-22170538
FORWARD LENGTH=1204
Length=1204
Score = 350 bits (189), Expect = 3e-95
Identities = 201/207 (97%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 537 CTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTATCAATGAGCCTCATGG 596
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGG 662
Query 597 GGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGGAGGTGCTCACTTCTAGG 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 661 GGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCACTTCTGGG 602
Query 657 ACATTGGTTCTGTAAGGAGGGGAAGTCATCGGTCGAACCGTATGTTGTAGCTCATAACAT 716
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 ACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTCATAACAT 542
Query 717 TCTCTTGTCTCATGCTGCTGCTTACCA 743
||| |||||||||||||||||||||||
Sbjct 541 TCTGTTGTCTCATGCTGCTGCTTACCA 515
Score = 316 bits (171), Expect = 3e-85
Identities = 191/200 (96%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 1348 AGGAATGATGAATGCGATGTAAGAGGATATTTTGTGTGGTCATTGCTAGACAATTGGGAA 1407
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 AGGAATGATGAATGCGACGTAAGAGGATATTTTGTGTGGTCATTGCTAGACAATTGGGAA 266
Query 1408 TGGAACTCAGGATACACGGTCCGGTTCGGGATCTACTACGTTGACTACAAGAACAATCTC 1467
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 265 TGGAACTCAGGATACACGGTCCGGTTTGGGATCTACTATGTTGACTACAAGAACAATCTC 206
Query 1468 ACAAGGATACCTAAAGCCTCTGCTCGATGGTTTCAAAGAATACTTAGCGGCTCTACTTCA 1527
||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 205 ACAAGGATACCTAAAGCTTCTGCTCGATGGTTTCAAACAATACTTAGCGGCTCTTCTTCA 146
Query 1528 ---TCAGATTCCAGCAAGCT 1544
|||||||||||||||||
Sbjct 145 ACATCAGATTCCAGCAAGCT 126
Score = 139 bits (75), Expect = 7e-32
Identities = 86/91 (95%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 1132 GAAA-AAGCAGGATCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGT 1190
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GAAACAGGCAGGGTCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGT 450
Query 1191 GTATCTTAAAGACATGTATGGAAACCCACCT 1221
|||| |||||||||| |||||||||||||||
Sbjct 449 GTATGTTAAAGACATATATGGAAACCCACCT 419
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 1322 ACCTCTCAAACTTATCAGCTGCCATAAGG 1350
|||||||||||||||||||||||||||||
Sbjct 422 ACCTCTCAAACTTATCAGCTGCCATAAGG 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5