BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495538
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54585.1 | Symbols: | unknown protein; Has 30201 Blast hits... 743 0.0
> AT5G54585.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22175539-22176691
FORWARD LENGTH=730
Length=730
Score = 743 bits (402), Expect = 0.0
Identities = 504/552 (91%), Gaps = 11/552 (2%)
Strand=Plus/Plus
Query 6 ATAAAAGGAAGAGAAGTGATCAGGTGTGGTAACGTGTAGGATATGAAATACTTGTTGGAG 65
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 108 ATAAAAGGAAGAGAAGTGATCAGGTGTGGTGACGAGTAGGATATGAAATTCTTGTTGGAA 167
Query 66 CTCGTCGTGCCTTGTTTTGGTTCGCAACAGTTCCAAGAATCCGCCGC-A--ACCGCAGAA 122
||||||||||||||||||||||| ||||||||||||||||||||||| | || || ||
Sbjct 168 CTCGTCGTGCCTTGTTTTGGTTCACAACAGTTCCAAGAATCCGCCGCAAGTACTGCGGAT 227
Query 123 GATTCGGTTTCAGACGAAACGCAAACGCTAATGAAACAGCGGAGGCGACGGAAACGCGTT 182
||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 228 GATTCGGTTTCTGACGAAACACAAACGCTGATGAAACAACGGAGGCGACGGAAACGCGTT 287
Query 183 AGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCACTTAGCGTTATCTCT 242
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 288 AGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCTCTTAGCGTTATCTCC 347
Query 243 GAGAACAAACCGGCAATAACGAAGATATCGGAAAAGGACGAAGAAAAGAAGAAAGTTCGT 302
|||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 348 GAGAACAAGCCGGCGATAACGAAGATATCAGAAAAGAACGAAGAAAAGAAGAAAGTCCGT 407
Query 303 CGGAAAAGTGAAGGCAACGGCGGCGGTGACGCGTCGTCGCTATCCGGCGGTGGTCATGTT 362
|||||||||||||||||||||||||| ||||| || || | ||||| ||||||||| ||
Sbjct 408 CGGAAAAGTGAAGGCAACGGCGGCGGAGACGCATCATCACGGTCCGGTGGTGGTCATATT 467
Query 363 CGTTTCTGTAGTGACGATTTCGGGAGAAATGCTTTTGAACCGGTGATTCCGGCATTCTCA 422
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 468 CGTTTCCGTAGTGACGATTTCGGGAGAAATGCTTTCGAACCGGTGATTCCGGCATTCTCG 527
Query 423 CCGACTCCGTTCATGTTTTGAGTTTAAGTTTGTGGTGAAATTTATGTGtatatactatat 482
||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||
Sbjct 528 CCGACTCCGTTCATGTTTTGAGTTTAAGTTTCTGGTGAAGTTTATGTGTATA-A-TATAT 585
Query 483 atatattaataaatatgttaatgttaatggaaagatgtatcattaatgtatatatTTCTT 542
| || || | ||||||| |||||||||||||||||| |||||||||||||| |||||
Sbjct 586 -TG-AT-AA-A--TATGTTATTGTTAATGGAAAGATGTAGCATTAATGTATATACTTCTT 639
Query 543 TGATATTACTAC 554
|||| |||||||
Sbjct 640 TGATTTTACTAC 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5