BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495540
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54590.2 | Symbols: CRLK1 | Protein kinase superfamily prote... 2013 0.0
> AT5G54590.2 | Symbols: CRLK1 | Protein kinase superfamily protein
| chr5:22180480-22182698 FORWARD LENGTH=1323
Length=1323
Score = 2013 bits (1090), Expect = 0.0
Identities = 1240/1313 (94%), Gaps = 7/1313 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGAGAAT-CATTTGGTTTGATTGTTGGGATCTCATTAGGTTTGGTGATTGGTGT 59
||||||||||||| || || || || |||||||||||| |||||||||||||||||||
Sbjct 1 ATGGAAGGAGAATCCA-AAGGATTAATCGTTGGGATCTCACTAGGTTTGGTGATTGGTGT 59
Query 60 TGCT-TTAGCTATTTCAGCTTTGTTCTGCTTTAGGTATCATAGAAAAAGGTCTCAGATTG 118
|| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TG-TCTTAGCTATCTCAGCTTTGTTCTGCTTTAGGTATCATAGAAAAAAGTCTCAGATTG 118
Query 119 TTAATAGTGGTTCAAGAAGAAGTGCTACCATTCCTATCAGAGAGAATGGAGCTGATTCTT 178
| |||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 119 TGAATAGTGGATCACGAAGAAGTGCAACCATTCCCATCAGAGAGAATGGAGCTGATTCGT 178
Query 179 GTAATGTAATGTCGGATTCGACTATTGGTCCGGATTCGCCTGTGAAATCTTCCAAGAATG 238
||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 179 GTAATATAATGTCGGATTCGACCATTGGTCCGGATTCACCTGTGAAATCTTCTAAGAATG 238
Query 239 GGAGGTCTGTTTGGCTTGAAGGGTTTAGTAAGAGGAGTAATGTCATCTCTGCTTCTGGCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAGGTCTGTTTGGCTTGAAGGGTTTAGTAAGAGGAGTAATGTCATCTCTGCTTCTGGCA 298
Query 299 TTTTGGAATATTCCTACAGGGATTTGCAGAAAGCGACATGTAATTTCACGACTTTGATAG 358
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TTTTGGAATATTCTTACAGGGATTTGCAGAAAGCGACGTGTAATTTCACGACTTTGATAG 358
Query 359 GCCAAGGAGCATTTGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATTGTGGCTG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 GCCAAGGAGCATTTGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTG 418
Query 419 TTAAAGTTCTTGCCACTGATTCCAAGCAGGGCGAAAAAGAGTTTCAGACAGAGGTTATGT 478
| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 419 TGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGGTTATGT 478
Query 479 TATTGGGAAGGTTGCATCATCGTAACCTAGTGAACTTGATTGGATATTGCGCAGAGAAAG 538
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 479 TATTGGGAAGGTTGCATCACCGTAACCTAGTGAACTTGATTGGATACTGTGCAGAGAAAG 538
Query 539 GCCAACACATGCTTATATATGTCTACATGAGTAAAGGAAGCTTAGCTTCACATTTATACA 598
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 539 GCCAACACATGCTTATATATGTTTACATGAGTAAAGGAAGCTTAGCTTCTCATTTATACA 598
Query 599 GCGAAAAACATGAACCGTTGAGCTGGGATTTGAGAGTATATATTGCTTTAGATGTGGCAA 658
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCAC 658
Query 659 GAGGTCTAGAGTATCTTCATGATGGGGCGGTTCCTCCTGTAATCCACAGAGATATCAAAT 718
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 GTGGTCTAGAGTATCTTCATGATGGGGCTGTTCCTCCTGTAATCCACAGAGATATCAAAT 718
Query 719 CTTCCAACATTTTGTTGGACCAATCCATGAGAGCTCGGGTTGCTGACTTTGGCCTCTCCA 778
|||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGGTTGCTGACTTTGGCCTCTCCA 778
Query 779 GAGAAGAAATGGTAGATAAACATGCTGCTAACATCAGAGGAACATTTGGCTACCTTGATC 838
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 779 GAGAAGAAATGGTAGACAAACATGCAGCTAACATCAGAGGAACATTTGGCTACCTCGATC 838
Query 839 CCGAATACATTTCCACTAGAACATTCACCAAGAAAAGCGATGTTTATGGCTTCGGGGTTT 898
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 839 CCGAATACATTTCAACAAGAACATTCACCAAGAAAAGCGATGTCTATGGCTTCGGAGTTT 898
Query 899 TACTTTTCGAGCTTATAGCAGGAAGAAATCCTCAACAAGGTCTAATGGAATTGGTTGAGC 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGCTTTTCGAGCTTATAGCAGGAAGAAATCCTCAACAAGGTCTAATGGAATTGGTTGAGC 958
Query 959 TGGCGGCGATGAATGCGGAGGAAAAAGTTGGGTGGGAAGAGATAGTGGATTCAAGATTAG 1018
||||||| |||||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 959 TGGCGGCTATGAATGCAGAGGAAAAAGTCGGATGGGAAGAGATAGTAGATTCAAGATTAG 1018
Query 1019 ATGGGAGATTTGATTTACAAGAAGTGAATGAAGTTGCAGCTTTTGCTTACAAATGCATCT 1078
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 ATGGGAGATATGATTTACAAGAAGTGAATGAAGTAGCAGCTTTTGCTTACAAATGCATCT 1078
Query 1079 CTCGTGCACCTAGAAAACGTCCCAACATGAGGGACATTGTTCAGGTTTTGACTCGTGTTA 1138
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTCGTGCACCTAGAAAACGTCCTAACATGAGGGACATTGTTCAGGTTTTGACTCGTGTTA 1138
Query 1139 TTAAGGTGAGACATTGCAGAAAACGACAGAAGAATTCTCCGTCGCCTTCTCCGCGGCCTC 1198
|||| ||||||||||||||||| || |||||||||||||||||||| ||||| |||| ||
Sbjct 1139 TTAAAGTGAGACATTGCAGAAAGCGGCAGAAGAATTCTCCGTCGCCGTCTCCACGGCTTC 1198
Query 1199 -TGC-C-TCCTCCGATAGTGGAGGAGTCAGAAGGTGAGCTAACCGCAAACGGATCATTAC 1255
| | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1199 CTCCTCCTCCTCCGATAGTGGAGGAGTCAGAAGGTGAGTTAACTGCAAACGGATCATTAC 1258
Query 1256 GATCAGAAACTCATCGGAGGGATAATTCCGTGGACAGTAGTATAGCTGAAGAC 1308
||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 GATCAGAAATTCATCGGAGGGATAATTCCTTGGACAGTAGTATAGCTGAAGAC 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5