BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495546
Length=3350
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54650.1 | Symbols: Fh5, ATFH5 | formin homology5 | chr5:221... 5243 0.0
> AT5G54650.1 | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197629-22202110
REVERSE LENGTH=3391
Length=3391
Score = 5243 bits (2839), Expect = 0.0
Identities = 3194/3361 (95%), Gaps = 42/3361 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCTTGAGAGCTAATATCTCCGTGAATTTATCTCGTCGACTTTTCTCGGaaaaa-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 ATGAAGCTTGAGAGCTAATATCTCCGTGAATTTATCTCGTCGACTTTTCTCGGAAAAAGT 112
Query 59 aaaaGGTTGAAACtttttttGGTCTCTCTCTGGTCAAAATTTTGGTTTTGGTAGAACGGA 118
||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||| |
Sbjct 113 AAAAGGTTGAAAC-TTTTTTGGTCTCTCTCTGGTCAAAATTCTGGGTTTGGTTGAACGCA 171
Query 119 CCGACGACAAATCGCATTGTCAA-AATTGGATCTGGCCAACAATCATTAGCACCAACTCT 177
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 172 CCGACGACAAATCGCATTGTCAACATTTGGATCTGGCCAACAATCATTAGCACCAACTCT 231
Query 178 TCCCCTTTTGTGCTGTCTCTTGTTTTCTCGAAACGTGTAATTGATCTCGTCGCATTGTAG 237
||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 232 TCCCCTTTTGTGCTGTCTC--G-------AAAACGTGTAATTGATCTCGTGGCATTGTAG 282
Query 238 -AAGAAGCTTT-ATTAAATTAGTCTTCCAAGGAAATTGCATCGAAGTCAGCTCCAAA-TT 294
|||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 283 TAAGAAGCTTTAATTTAATTGGTCCTCCAAGGAAATTGCATCGAAGTCAGCTCCAAATTT 342
Query 295 TCGATCAGGGTTGTTGAGTTTTTGTGTTAAAGTTTCGATCTTTATCGAGTTTCAGCCAAA 354
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 343 TCGATCAGGGTTGTTGAGCTTTTGTGTTAAAGTTTCGATCTTTATCGAATTTCAGCAAAA 402
Query 355 AGCTGTATAATCAGCAATTTGATTCTATTGAGTATCTGATGAAATGAGAAGCAAAAGATA 414
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 403 AGCTGTAGAATCGGCAATTTGGTTCTATTGAGTATCTGATGAAATGAGAAGCAAAAGATA 462
Query 415 TGGTTGGAATGATTCAAGGAGGAATGGGTGATCAGAATTGGACTCGTTTAGTTTTCTGGT 474
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 463 TGGTTGGAATGATTCGAGGAGGAATGGGTGATCAGAATTGGAGTCGTTTAGTTTTCTGGT 522
Query 475 TGATTCTGCTTTCTGGGTTCTTGGTGATAACATTGGAAGAGAATTCAGATAAAGATGAGA 534
|||||||| |||||||||| ||||| ||||| |||||||||||| |||| ||||||||||
Sbjct 523 TGATTCTGTTTTCTGGGTTATTGGTAATAACTTTGGAAGAGAATCCAGAAAAAGATGAGA 582
Query 535 TTTTTCTTAGTCAATTCATGGCCCCATCAACAGGGCAGGTCAATGAACCTATGGAAGAAA 594
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 583 TTTTTCTTAGTCAATTCATGGCCCCATCAACAGGGCAGGTCAATGAACATATGGAAGAAA 642
Query 595 CATCATGGGCGCAGCGTTGTTGGCAAGATTCAGATTGTGTGAAGGAAGCTGTCGCAGCAT 654
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 643 CATCATGGGCGCAGCGTTGTTGGCAAGATTCAGATTGTGTGAAGGAAGCTGTGGCAGAAT 702
Query 655 TCAATTTATGTTTTCCAGGATCAAAGGATAGTAGGGAACTATTTGGTTTGAATCATTCCC 714
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 703 TCAATTTATGTTTTCCAGGATCAAAGGATAGTAGGGAACTATTTGGTTTGAACCATACCA 762
Query 715 ATCTGAAGCAGACTCTTCTTGATTGTATCCAAGAAAAAGGAAAGTTAAATGGTAATAACC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 763 ATCTGAAGCAGACTCTTCTTGATTGTATCCAAGAAAAAGGAAAGTTAAATGGTCATAACC 822
Query 775 CCAATTATCTCGAGCTCTTATCATCTATGCTTGATATTCCGAGGAGAAATCTAGCTACTA 834
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CCAAGTATCTGGAGCTCTTATCATCTATGCTTGATATTCCGAGGAGAAATCTAGCTACTA 882
Query 835 GACCTGGCTCTTCCCCTTCTCCTTCACCTTTACCTTCCCGTCCTCCTAAGCATAGTCCGG 894
||| ||||||||||| | | | | |||| ||||||||| |||||||||| ||||| ||
Sbjct 883 AACCCGGCTCTTCCCC-T-T-C--C-CCTTCACCTTCCCGCCCTCCTAAGCGTAGTCGGG 936
Query 895 GGACTCGGCGCCCACCTACTCGATCAAGATCCCCACCTCCGCGGAAATCATCTTTTCCAC 954
|| ||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 937 GGCCTCCGCGCCCACCTACTCGACCAAAATCCCCACCTCCTCGGAAATCATCTTTTCCAC 996
Query 955 CATCAAGATccccccctcccccTCCTGCTaaaaaaaaCGTTTCTAAAAATTCAACTTCTG 1014
|||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 997 CATCAAGATCTCCCCCTCCTCCTCCTGCTAAGAAAAACGCTTCTAAAAATTCAACTTCTG 1056
Query 1015 CACCTGTTTCACCTGCGAAAAGAAAAGAGGATCATGAGAAAACAATCATCATTGCTGTTG 1074
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CACCTGTTTCACCTGCGAAAAAAAAAGAGGATCATGAGAAAACAATCATCATTGCTGTTG 1116
Query 1075 TTGTGACTGCAGTTTCCACGTTTTTGTTAGCTGCATTATTCTTCTTATGCTGCACCAGGG 1134
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1117 TTGTGACTGCAGTTTCTACGTTTTTGTTGGCTGCATTATTCTTCTTATGCTGCTCCAGGG 1176
Query 1135 TTTGTGGAAATGGTTCAGGAGGCAGGAAAAACGATGAACGGCCTCTTCTCAGTTTAAGCA 1194
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1177 TTTGTGGAAATGGTTCAGGAGGCAGGAAAAACGATGAAAGGCCTCTTCTCAGTTTAAGCA 1236
Query 1195 GTAGCGATTACTCTGTTGGTTCCTCCATCAATTATGGTGGTTCTGTCAAAGGAGACAAGT 1254
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1237 GTAGTGATTACTCTGTTGGTTCCTCCATCAACTATGGTGGTTCGGTCAAAGGAGATAAGC 1296
Query 1255 TGGGTCATCAATCTTTTAATATTTACTCAAACCAAGGAAAAATGTCATCTTTCGATGGAA 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AGGGTCATCAATCTTTTAATATTTACTCAAACCAAGGAAAAATGTCATCTTTCGATGGAA 1356
Query 1315 GTAATTCTGACAATTCGGATTCGTTAGAAGAAAGGCTGTCACACGAAGGAATGCGAAATA 1374
|||| ||||||| ||| ||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 1357 GTAACTCTGACACTTCAGATTCGTTAGAAGAACGGCTATCACACGAAGGCCTGAGAAATA 1416
Query 1375 ATAGTATCACTAATCACGGGCTTCCACCTTTGAAGCCTCCACCTGGAAGAACAGCTTCTG 1434
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ATAGTATTACCAATCACGGGCTTCCACCTTTGAAGCCTCCACCTGGAAGAACAGCTTCTG 1476
Query 1435 TACTCTCAGGGAAGTCTTTTTCTGGAAAAGTGGAGCCTCTTCCACCGGAACCACCCAAAT 1494
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TACTTTCAGGGAAGTCTTTTTCTGGAAAAGTGGAGCCTCTTCCACCGGAACCACCCAAAT 1536
Query 1495 TTCTTAAGGTATCCTCaaaaaaaGG-TTCTGCTCCTCCGCCGCCAGTTCCAGCACCGCCA 1553
|||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 1537 TTCTTAAGGTATCCTC-GAAAAAGGCTTCTGCTCCTCCACCGCCAGTTCCAGCACCGCAA 1595
Query 1554 ATGCCATCTTCTGCTGGTCCTCCACGACCGCCTCCTCCAGCTCCGCCACCTGGTTCTGGT 1613
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1596 ATGCCATCTTCTGCTGGTCCTCCACGACCGCCCCCTCCAGCTCCGCCACCTGGTTCTGGT 1655
Query 1614 GGGCCTAAGCCACCACCTCCTCCTGGACCAAAAGGACCACGTCCGCCTCCACCGATGAGT 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1656 GGGCCTAAGCCACCACCTCCTCCTGGACCAAAAGGACCACGTCCGCCTCCACCAATGAGT 1715
Query 1674 CTCGGCCCAAAAGCACCCCGACCGTCTTCTGGGCCAGCA-ACCGCATCAGATGATGATGC 1732
|| ||||||||||||||||||||| |||||||||||||| | |||| ||||||||||||
Sbjct 1716 CTGGGCCCAAAAGCACCCCGACCGCCTTCTGGGCCAGCAGA-TGCATTAGATGATGATGC 1774
Query 1733 TCCCAAAACAAAGTTGAAGCCATTTTTCTGGGATAAAGTGCAAGCAAACCCAGAGCATTC 1792
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1775 TCCCAAAACAAAGCTGAAGCCATTTTTCTGGGATAAAGTGCAAGCAAACCCAGAACATTC 1834
Query 1793 AATGGTTTGGAATGATATAAGATCAGGATCCTTTCAGTTCAATGAAGAGATGATAGAGTC 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AATGGTTTGGAATGATATAAGATCAGGATCCTTTCAGTTCAATGAAGAGATGATAGAGTC 1894
Query 1853 GTTATTTGGATATGCAGCAGCAGACAAGAATAAAAACGACAAGAAGGGGTCCTCTGGACA 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 GTTATTTGGATATGCAGCAGCAGACAAGAATAAAAACGACAAGAAGGGGTCCTCTGGACA 1954
Query 1913 AGCTGCTTTACCTCAGTTTGTTCAGATTCTGGAACCAAAGAAAGGACAAAATCTATCAAT 1972
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1955 AGCTGCTTTACCTCAGTTTGTTCAGATCCTCGAACCAAAGAAAGGACAAAATCTATCAAT 2014
Query 1973 TCTTTTGCGTGCTTTGAATGCGACAACTGAAGAAGTGTGTGATGCACTCCGCGAAGGAAA 2032
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2015 TCTTTTGCGTGCTTTGAATGCGACAACTGAAGAAGTGTGTGATGCACTTCGCGAAGGAAA 2074
Query 2033 TGAGCTTCCTGTAGAATTCATTCAGACTCTGTTAAAGATGGCACCAACACCAGAAGAAGA 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 TGAGCTTCCTGTAGAATTCATTCAGACTCTGTTAAAGATGGCACCAACACCAGAAGAAGA 2134
Query 2093 ACTAAAGCTTAGATTATACTGTGGTGAAATAGCCCAACTGGGATCTGCTGAACGATTCCT 2152
|||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 2135 ACTAAAACTTAGATTATACTGCGGTGAAATAGCTCAACTGGGATCCGCTGAACGATTCCT 2194
Query 2153 GAAAGCAGTCGTTGATATCCCTTTTGCTTTCAAGCGTCTAGAGGCACTTCTATTTATGTG 2212
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2195 GAAAGCAGTCGTTGATATCCCTTTTGCTTTCAAGCGTCTAGAAGCACTTCTATTTATGTG 2254
Query 2213 TACACTCCATGAAGAAATGGCCTTTGTTAAAGAGTCATTTCAGACATTGGAGGTTGCTTG 2272
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 2255 TACACTCCATGAAGAAATGGCTTTTGTTAAAGAATCATTTCAGAAATTGGAGGTTGCTTG 2314
Query 2273 TAAAGAACTTAGGGGAAGTCGGCTGTTCCTGAAGCTCTTAGAGGCGGTTCTTAAGACCGG 2332
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2315 TAAAGAACTTAGGGGAAGTCGGCTGTTCCTGAAGCTCTTAGAGGCAGTTCTTAAGACCGG 2374
Query 2333 AAACCGAATGAATGATGGTACATTTAGGGGTGGTGCGCAAGCTTTCAAGCTGGACACTCT 2392
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2375 AAACCGAATGAATGATGGTACATTTAGGGGTGGTGCTCAAGCTTTCAAGCTGGACACTCT 2434
Query 2393 TTTGAAATTAGCAGACGTCAAGGGAACTGATGGGAAAACAACGCTCCTCCA-TTTCGTTG 2451
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 2435 TTTGAAATTAGCAGACGTCAAGGGAACAGATGGGAAAACAACGCTCCTCCACTTT-GTTG 2493
Query 2452 TTCAAGAGATAATTAGGACTGAAGGTGTAAGAGCGGCCCGTACTATCAGAGAGAGCCAAA 2511
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2494 TTCAAGAGATAATTAGGACTGAAGGTGTAAGAGCGGCTCGTACTATCAGAGAGAGCCAAA 2553
Query 2512 GTTTCTCAAGTGTTAAAACAGAGGATCTCTTAGCCGAGGAAACTTCTGAAGAGACAGAAG 2571
||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||
Sbjct 2554 GTTTCTCAAGTGTTAAAACAGAGGATCTCCTAGTCGAGGAAACCTCTGAAGAGTCAGAAG 2613
Query 2572 AGAATTACCGTAATCTTGGACTTCAGAAAGTTTCAGGCTTGAGCAGTGAGCTTGAACATG 2631
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2614 AGAATTACCGTAATCTTGGACTTGAGAAAGTTTCAGGCTTGAGCAGTGAGCTTGAACATG 2673
Query 2632 TAAAGAAATCTGCAAACATAGATGCTGATGGTTTAACAGGGACTGTTCTTAAAATGGGTC 2691
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2674 TAAAGAAATCTGCAAACATAGATGCCGATGGTTTAACAGGGACTGTTCTTAAAATGGGTC 2733
Query 2692 ATGCTTTGTCGAAAGCTCGAGACTTTGTCAACTCAGAGATGAAGAGTTCAGGCGAGGAAA 2751
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2734 ATGCTTTGTCGAAAGCTCGAGACTTTGTCAACTCAGAGATGAAAAGTTCAGGCGAGGAGA 2793
Query 2752 GTGGGTTTCGTGAAGCACTTGAAGATTTTATTCAAAATGCTGAAGGAAGCATCATGTCCA 2811
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2794 GTGGGTTTCGTGAAGCGCTTGAAGATTTTATTCAAAATGCTGAAGGAAGCATCATGTCCA 2853
Query 2812 TACTCGGGGAAGAGAAGAGAATAATGGCTTTGGTGAAAAGTACAGGGGACTATTTCCATG 2871
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2854 TACTCGAGGAAGAGAAGAGAATAATGGCTTTGGTGAAAAGTACAGGGGACTATTTCCATG 2913
Query 2872 GCAAAGCAGGAAAAGATGAAGGGTTGCGTTTGTTTGTGATTGTACGCGATTTTCTGATAA 2931
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2914 GCAAAGCAGGAAAAGACGAAGGGTTGCGTTTGTTTGTGATTGTGCGCGATTTTCTGATAA 2973
Query 2932 TCTTAGATAAGTCCTGCAAAGAAGTCAGAGAGGCACGAGGAAGACCCGTAAGGATGGCCA 2991
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2974 TCTTAGATAAATCCTGCAAAGAAGTCAGAGAAGCACGAGGAAGACCCGTAAGGATGGCCA 3033
Query 2992 GAAAACAGGGCTCAACAGCCTCATCTTCTTCAGAAACTCCAAGACAAACGCCATCATTAG 3051
||||||| ||||||||||||||| | ||||| |||||||||||||||||||| |||||||
Sbjct 3034 GAAAACAAGGCTCAACAGCCTCAGCATCTTCTGAAACTCCAAGACAAACGCCTTCATTAG 3093
Query 3052 ATCCTAGACAGAAACTGTTTCCAGCTATTACAGAGAGACGCATGGATCAGTCTAGTTCAG 3111
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3094 ATCCTAGGCAGAAGCTGTTTCCAGCTATTACAGAGAGACGCGTGGATCAGTCTAGTTCAG 3153
Query 3112 ATTCAGACTAAAAAGTACAAATCTTTGGTTTCGTTACCTGTTAGGACATAATTCCTCTGC 3171
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3154 ATTCAGACTAAAAAGTACAAATCTTTGGTTTCGTTACCTGTTAGGACATAATTCATCTGC 3213
Query 3172 GGTTTTGCTGAGAGCTTCTGATTAATCTTTTCCTACTGGGAGTGTAATGGCATTAACCCT 3231
|||||||||||||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 3214 TGTTTTGCTGAGAGCTT---AT----CTTTTCCTGCTGTGAGTGTAATGGCATTAACCCT 3266
Query 3232 CA-GACATGTCAGGTTTTAGTCACTGATGATTATATGAGTTTTTCAGATGTAATTTAAAG 3290
|| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 3267 CAAGACATGTCAGGTTTTAGTCACTGAT--T-AT--GAGTTTTTCAGATGTAATTTAAAG 3321
Query 3291 AGGCATAGACACTGTCACTCACTTGTACCAACTTTTT-CACATTTAGTTTTAGAAACACT 3349
||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||
Sbjct 3322 AGGCATAGACACTGTCACTCACTTGTACCAATTTTTTTCACATTTAGTCTTAGAAATACT 3381
Query 3350 T 3350
|
Sbjct 3382 T 3382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166704751589
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5