BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495549
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (... 1770 0.0
AT5G54690.1 | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltrans... 84.2 3e-15
> AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr5:22217055-22219274
FORWARD LENGTH=1201
Length=1201
Score = 1770 bits (958), Expect = 0.0
Identities = 1131/1205 (94%), Gaps = 50/1205 (4%)
Strand=Plus/Plus
Query 1 AAGATTCCTCAATTCGTCTCCTCCAACAGtttt-tt-ttCTC--CTTCTTTGGTTGTTCC 56
|||||||| |||||||||||||||||||||||| || ||||| ||||||||| ||||||
Sbjct 1 AAGATTCCCCAATTCGTCTCCTCCAACAGTTTTCTTCTTCTCTTCTTCTTTGGGTGTTCC 60
Query 57 TTCCACCAACGGCAGAAATC------G-----A--T-----T-CTTTCGATCTCTCTGAT 97
|||||||||||||||||||| | | | | |||||||||||||||||
Sbjct 61 TTCCACCAACGGCAGAAATCGATTTGGCTTAAATCTCCCCCTCCTTTCGATCTCTCTGAT 120
Query 98 CGCCGCCGGGAAGATTTAATTACCTGGGAGTT------Taaaaaaa-----------T-T 139
|||||||||||| ||| |||| || ||||||| ||||||| | |
Sbjct 121 CGCCGCCGGGAACATTCAATTTCCCGGGAGTTCAACAAAAAAAAAACTCTCCGTTTTTAT 180
Query 140 TTTT-CCCC-TTTTCACCGGTGGAAGTTTCAGGAGATGGTGTCACCCGAAAACGCTAATT 197
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TTTTCCCCCTTTTTCACCGGTGGAAGTTTCCGGAGATGGTGTCACCCGAAAACGCTAATT 240
Query 198 GGATTTGTGACTTGATCGATGCTGATTACGGAAGTTTCACAATCCAAGGTCCTGGTTTCT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTTGTGACTTGATCGATGCTGATTACGGAAGTTTCACAATCCAAGGTCCTGGTTTCT 300
Query 258 CTTGGCCTGTTCAGCAACCTATTGGTGTTTCTTCTAACTCCAGTGCTGGAGTTGATGGCT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGGCCTGTTCAGCAACCTATTGGTGTTTCTTCTAACTCCAGTGCTGGAGTTGATGGCT 360
Query 318 CAGCTGGAAATTCAGAAGCTAGCAAAGAACCTGGATCCAAAAAGAGGGGGAGATGTGAAT 377
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGGCTGGAAACTCAGAAGCTAGCAAAGAACCTGGATCCAAAAAGAGGGGGAGATGTGAAT 420
Query 378 CATCCTCTGCCACTAGCTCGAAAGCATGTAGAGAGAAGCAGCGACGGGACAGGTTGAATG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATCCTCTGCCACTAGCTCGAAAGCATGTAGAGAGAAGCAGCGACGGGACAGGTTGAATG 480
Query 438 ACAAGTTTATGGAATTGGGTGCTATTTTGGAGCCTGGAAATCCTCCCAAAACAGACAAGG 497
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAAGTTTATGGAATTGGGTGCAATTTTGGAGCCTGGAAATCCTCCCAAAACAGACAAGG 540
Query 498 CTGCTATCTTGGTTGATGCTGTCCGCATGGTGACACAGCTACGGGGTGAGGCCCAGAAGC 557
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 CTGCTATCTTGGTTGATGCTGTCCGCATGGTGACACAGCTACGGGGCGAGGCCCAGAAGC 600
Query 558 TGAAGGACTCCAATTCAAGTCTTCAGGACAAAATCAAAGAGTTAAAGACTGAGAAAAACG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAAGGACTCCAATTCAAGTCTTCAGGACAAAATCAAAGAGTTAAAGACTGAGAAAAACG 660
Query 618 AGTTGCGAGATGAGAAACAGAGGCTGAAGACAGAGAAAGAAAAGCTGGAGCAGCAGCTGA 677
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTGCGAGATGAGAAACAGAGGCTGAAGACAGAGAAAGAAAAGCTGGAGCAGCAGCTGA 720
Query 678 AAGCCATGAATGCTCCTCAACCAAGCTTTTTCCCAGCCCCACCTATGATGCCTACTGCTT 737
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 AAGCCATGAATGCTCCTCAACCAAGTTTTTTCCCAGCCCCACCTATGATGCCTACTGCTT 780
Query 738 TTGCTTCTGCACAAGGCCAAGCTCCCGGAAACAAGATGGTGCCAATCATCAGTTACCCAG 797
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 TTGCTTCAGCGCAAGGCCAAGCTCCTGGAAACAAGATGGTGCCAATCATCAGTTACCCAG 840
Query 798 GAGTTGCCATGTGGCAGTTCATGCCTCCTGCTTCAGTCGATACTTCTCAGGATCATGTCC 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGTTGCCATGTGGCAGTTCATGCCTCCTGCTTCAGTCGATACTTCTCAGGATCATGTCC 900
Query 858 TTCGCCCTCCTGTTGCTTAGTCAAGAAAAATCATCAACCGGTTTGCATCTTGCTTCCGCT 917
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 901 TTCGTCCTCCTGTTGCTTAATCAAGAAAAATCATCAACCGGTTTGCTTCTTGCTTCCGCT 960
Query 918 TAAAAGAAAAGTCTCCATTTGTTTTGCTCTCCTCT-T--CTCGGCTTTCTTAGTCTTATC 974
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 961 TAAAAGAAAAGTCTCCATTTGTTTTGCTCTCCTCTCTTTCTCGGCTTTCTTAGTCTTATC 1020
Query 975 GTTACTTTTGCTTTGTCGTGTTATCATCGTAACTGTTATCTGTTGAACAATGATATGAAA 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 ----CTTTTGCTTTGTCGTGTTATCATCGTAACTGTTATCTGTTGAACAATGATATGACA 1076
Query 1035 TTGTAAACTCCAATTGCTTCTCGCAATGTTATCTATTCACATGTAAATTTAAGTAGAGTT 1094
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTGTAAACTCCAATTGCTTCGCGCAATGTTATCTATTCACATGTAAATTTAAGTAGAGTT 1136
Query 1095 TGGCAGATCGTCTCTCACTTTATGTGTTCTTACATTAATACATAGAATGGGGTTACTTTC 1154
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1137 TGGCAGATCGTCTCTCACTTTATGTGTTCTTACATTAATACATAGAATGTGGTTACTTCC 1196
Query 1155 TCGCC 1159
|||||
Sbjct 1197 TCGCC 1201
> AT5G54690.1 | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltransferase
12 | chr5:22219224-22221840 REVERSE LENGTH=1890
Length=1890
Score = 84.2 bits (45), Expect = 3e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1109 TCACTTTATGTGTTCTTACATTAATACATAGAATGGGGTTACTTTCTCGCC 1159
||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1890 TCACTTTATGTGTTCTTACATTAATACATAGAATGTGGTTACTTCCTCGCC 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5