BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495550
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54690.1 | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltrans... 2977 0.0
> AT5G54690.1 | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltransferase
12 | chr5:22219224-22221840 REVERSE LENGTH=1890
Length=1890
Score = 2977 bits (1612), Expect = 0.0
Identities = 1791/1876 (95%), Gaps = 18/1876 (1%)
Strand=Plus/Plus
Query 46 acaaagacataataaataaagaaacagaggagaaacagagagaTCATGCAGTTGCATATA 105
|||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 30 ACAAAGACATAATAAACAAAGAAACAGAGGAGAAACAGAGAG---ATGCAGTTACATATA 86
Query 106 TCTCCGAGCTTGAGACATGTGACTGTGGTCACAGGGAAAGGATTGAGAGAGTTCATAAAA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TCTCCGAGCTTGAGACATGTGACTGTGGTCACAGGGAAAGGATTGAGAGAGTTCATAAAA 146
Query 166 GTGAAAGTTGGTTCTAGAAGATTTTCTTATCAAATGATGTTTTATTCTCTACTCTTCTTC 225
|| || ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 147 GTTAAGGTTGGTTCTAGAAGATTCTCTTATCAAATGGTGTTTTACTCTCTACTCTTCTTC 206
Query 226 ACTTTTCTTCTCCGATTCGTCTTTGTTCTCTCCACCGTTGATACTATCGACGGCGATCCC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 ACTTTTCTTCTCCGATTCGTCTTTGTTCTCTCCACCGTTGATACTATCGACGGCGATCCC 266
Query 286 TCTCCTTGCTCCTCTCTTGCTTGCTTGGGGAAGAGACTAAAGCCACAA-CTTTTAGGAAG 344
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 267 TCTCCTTGCTCCTCTCTTGCTTGCTTGGGGAAAAGACTAAAGCCA-AAGCTTTTAGGAAG 325
Query 345 AAGGGTTGATTCTGGTAATGTTCCTGAAGCTATGTATCAAGTTTTAGAACAGCCTTTAAG 404
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 326 AAGGGTTGATTCTGGTAATGTTCCAGAAGCTATGTACCAAGTTTTAGAACAGCCTTTAAG 385
Query 405 CGAACAAGAACTCAAAGGAAGATCAGATATACCTCAAACACTTCAAGATTTCATGTCTGA 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CGAACAAGAACTCAAAGGAAGATCAGATATACCTCAAACACTTCAAGATTTCATGTCTGA 445
Query 465 AGTCAAAAGAAGTAAATCAGACGCAAGAGAATTTGCTCAAAAGCTAAAAGAAATGGTGAC 524
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 AGTCAAAAGAAGCAAATCAGACGCAAGAGAATTTGCTCAAAAGCTAAAAGAAATGGTGAC 505
Query 525 ATTGATGGAACAGAGAACAAGAACGGCTAAGATACAAGAGTATTTATATCGACACGTCGC 584
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 506 ATTGATGGAACAGAGAACAAGAACGGCTAAGATTCAAGAGTATTTATATCGACATGTCGC 565
Query 585 ATCAAGCAGCATACCGAAACAACTTCACTGTTTAGCTCTTAAACTAGCCAACGAACATTC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 566 ATCAAGCAGCATACCGAAACAACTTCACTGTTTAGCTCTTAAACTAGCCAACGAACACTC 625
Query 645 GATAAACGCAGCTGCGCGTCTCCAGCTTCCAGAAGCTGAGCTAGTCCCAATGTTAGTAGA 704
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 626 GATAAACGCAGCGGCGCGTCTCCAGCTTCCAGAAGCTGAGCTTGTCCCTATGTTGGTAGA 685
Query 705 CAACAACTACTTTCACTTTGTATTGGCATCAGACAATATTCTTGCAGCTTCGGTCGTGGC 764
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 686 CAACAACTACTTTCACTTTGTCTTGGCTTCAGACAATATTCTTGCAGCTTCGGTTGTGGC 745
Query 765 TAAGTCATTGGTTCAAAACGCTTTAAGACCTCATAAGATCGTTCTTCACATCATAACGGA 824
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TAAGTCGTTGGTTCAAAATGCTTTAAGACCTCATAAGATCGTTCTTCACATCATAACGGA 805
Query 825 TAGGAAAACTTATTTCCCAATGCAAGCTTGGTTCTCATTGCATCCTCTGTCTCCAGCAAT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TAGGAAAACTTATTTCCCAATGCAAGCTTGGTTCTCATTGCATCCTCTGTCTCCAGCAAT 865
Query 885 AATTGAGGTCAAGGCTTTGCATCATTTCGATTGGTTATCGAAAGGGAAAGTTCCCGTTTT 944
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 866 AATTGAGGTCAAGGCTTTGCATCATTTCGATTGGTTATCGAAAGGTAAAGTACCCGTTTT 925
Query 945 GGAAGCTATGGAGAAAGATCAGAGAGTGAGGTCTCAATTCAGAGGCGGATCATCAGTTAT 1004
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 926 GGAAGCTATGGAGAAAGATCAGAGAGTGAGGTCTCAATTCAGAGGTGGATCATCGGTTAT 985
Query 1005 TGTGGCTAATAACAACGAGAATCCGGTTGTTGTTGCTGCTAAGTTACAAGCTCTTAGCCC 1064
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 986 TGTGGCTAATAACAAAGAGAACCCGGTTGTTGTTGCTGCTAAGTTACAAGCTCTCAGCCC 1045
Query 1065 TAAATACAACTCCTTGATGAATCACATCCGTATTCATCTACCAGAGTTGTTCCCGAGCCT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1046 TAAATACAACTCCTTGATGAATCACATCCGTATTCATCTACCAGAGTTGTTTCCAAGCTT 1105
Query 1125 AAACAAGGTTGTGTTTCTAGACGATGACATTGTGATCCAAACTGATCTTTCACCTCTCTG 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1106 AAACAAGGTTGTGTTTCTAGACGATGACATTGTGATCCAAACTGATCTTTCACCTCTTTG 1165
Query 1185 GGACATTGACATGAATGGGAAAGTAAATGGTGCAGTAGAGACATGTCGAGGAGAAGACAA 1244
|||||||||||||||||| ||||||||||| ||||| || |||||| |||||||||||||
Sbjct 1166 GGACATTGACATGAATGGAAAAGTAAATGGAGCAGTGGAAACATGTAGAGGAGAAGACAA 1225
Query 1245 GTTTGTGATGTCAAAGAAGTTCAAGAGTTACCTCAACTTCTCAAATCCAACAATTGCCAG 1304
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1226 GTTTGTGATGTCAAAGAAGTTCAAGAGTTACCTCAACTTCTCGAATCCGACAATTGCCAA 1285
Query 1305 AAACTTCGATCCAGAGGAATGTGCTTGGGCTTATGGAATGAATGTTTTCGACCTAGCGGC 1364
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1286 AAACTTCAATCCAGAGGAATGTGCATGGGCTTATGGAATGAATGTTTTCGACCTAGCGGC 1345
Query 1365 TTGGAGGAGGACTAACATAAGCTCCACTTACTATCATTGGCTTGACGAGAACTTAAAATC 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TTGGAGGAGGACTAACATAAGCTCCACTTACTATCATTGGCTTGACGAGAACTTAAAATC 1405
Query 1425 AGACCTGAGTTTGTGGCAACTGGGAACTTTGCCTCCCGGGTTGATAGCTTTCCACGGCCA 1484
|||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 1406 AGACCTGAGTTTGTGGCAGCTGGGAACTTTGCCTCCTGGGCTGATTGCTTTCCACGGTCA 1465
Query 1485 TGTCCAAACCATAGATCCGTTCTGGCATATGCTTGGTCTCGGATACCAAGAAACCACGAG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1466 TGTCCAAACCATAGATCCGTTCTGGCATATGCTTGGTCTCGGATACCAAGAGACCACGAG 1525
Query 1545 CTATGCTGATGCTGAAAGCGCCGCCGTTGTTCATTTCAATGGAAGAGCTAAGCCTTGGCT 1604
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1526 CTATGCCGATGCTGAAAGTGCCGCTGTTGTTCATTTCAATGGAAGAGCTAAGCCTTGGCT 1585
Query 1605 GGATATAGCATTTCCTCATCTACGTCCTCTCTGGGCTAAGTATCTTGATTCCTCTGACAG 1664
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1586 GGATATAGCATTTCCTCATCTACGTCCTCTCTGGGCTAAGTATCTTGATTCTTCTGACAG 1645
Query 1665 GTTCATCAAGAGCTGTCACATTAGAACATCAAGATAATCACAAACCAAAACCCATTTTCT 1724
|| ||||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||||
Sbjct 1646 ATTTATCAAGAGCTGTCACATTAGAGCATCATGATAA-CACAAACCAAGACC-ATTTTCT 1703
Query 1725 ACACTGGCACCCAGAGAGGAGATTCACAGATCAAAATATAGGATCAAACTTTTCTGCAAT 1784
||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1704 ACATTGGCACCCAGAGAGGAGATTCACAGATCAAGATATAGGAGCAAACTTTTCTGCAGT 1763
Query 1785 GGAGTTT-CACTTCTCTACCGGATCATGTTTTGCCGTCTCTCCAGTCTCTCATGTTTCTA 1843
||||||| |||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 1764 GGAGTTTTCACTTCTCTACCGGATCATGTTTTGCGGTCTCTCC--T-------GTTTCTA 1814
Query 1844 AtttttttGTACTTTCAAACTCTTATGGCGAGAAAGTAACCCCATTCTATGTATTAATGT 1903
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1815 ATTTTTT-GTACTTTCAAACTCTTATGGCGAGGAAGTAACCACATTCTATGTATTAATGT 1873
Query 1904 ACGAACACATAAAGTG 1919
| ||||||||||||||
Sbjct 1874 AAGAACACATAAAGTG 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95029631685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5