BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495551
Length=2999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54730.1 | Symbols: ATATG18F, ATG18F, G18F | homolog of yeas... 4301 0.0
> AT5G54730.1 | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast
autophagy 18 (ATG18) F | chr5:22233789-22237341 REVERSE
LENGTH=3017
Length=3017
Score = 4301 bits (2329), Expect = 0.0
Identities = 2814/3037 (93%), Gaps = 78/3037 (3%)
Strand=Plus/Plus
Query 1 AACAACAGATTTCTAAAACAACTC-TTAATCAGGtcttc-t--tcttcgctctctcttct 56
|||||||||||||||||||||||| |||| |||||||| | |||||||||||||||||
Sbjct 13 AACAACAGATTTCTAAAACAACTCTTTAA--AGGTCTTCTTCATCTTCGCTCTCTCTTCT 70
Query 57 tcttatcctcaaaaaatct-ttccccttttcttgctcctt-AACGTTTCCAAAGTCTTTA 114
|||||||||| |||||| |||||||||||||||| ||| |||||| ||| |||| | |
Sbjct 71 TCTTATCCTC--TAAATCTCTTCCCCTTTTCTTGCT-CTTAAACGTTACCATAGTCCTAA 127
Query 115 TCAGATTACTGCTTCGAGACTCTTAATTCTTT-TTTCTGGGTTTTTAATATCTTCTAATT 173
||||||||||| ||| | | |||||| ||||| |||||||||||||||| ||||||||||
Sbjct 128 TCAGATTACTGTTTCCAAAGTCTTAA-TCTTTCTTTCTGGGTTTTTAATCTCTTCTAATT 186
Query 174 CTTTTCAATTTCAAC-ACAAATTTGTTGCTTTTAGGATCGTTGATTC-TAtcttctgggt 231
||||||||||| || | ||| || | ||| | ||||| | ||||||||||
Sbjct 187 CTTTTCAATTTTTACAAGAAAAAAAAAACTCACA-AATCATCGATTCGT-TCTTCTGGGT 244
Query 232 ttttgtaaaagttcgatctttttgtttctttcttgttgatt-tgtgtgtttcttgCTTCG 290
|||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 245 TTTTGTAAAAATTCGATCTTTTTGTTTCTTTC-TATTGATTGTGTGTGTTTCTTGCTTCG 303
Query 291 TGACATTTTC-GAGTTTGCGTGTA-TTTTGTTTCTATTTTT-AAAGATTCTAATCAAATT 347
||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 304 TGACA-TTTCAGAGTTTGCGTGTATTTTTGTTTCTATTTTTAAAAGATTCTAATCGAATT 362
Query 348 TGTTCAATTTCGGT-TTTAAAATTGCAATTTTTATCTCTGCCCCGTCTTTCTCGGCGATT 406
|||||||||||| | || ||||||| || ||| |||||| |||||||||||||| |||||
Sbjct 363 TGTTCAATTTCGCTCTTAAAAATTGTAAATTTGATCTCTCCCCCGTCTTTCTCGTCGATT 422
Query 407 CATTTTT-CTTGGAAATATCTCAGGCGTCGATATAGAGAATAAAAATCGAAACTTTGTTT 465
||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 423 CATTTTTGCTTGGATATATCTCAGGCGTCGATATAGAGAATAAAAATCGACACTTTGTTT 482
Query 466 CATTTGGAGGTTAAAGATCAAAGCTTTTTGGTAGTGAAGAG--T-CTCCACCATTATGAG 522
|||||||||| ||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 483 CATTTGGAGGCTAAAGATCAAAGCTTTTTGATAGTGAAGAGCCTCCTCCACCATTATGAA 542
Query 523 GAAAAACGGTGACGGTTCTTCTCCGAAGTCGCCGGACGGAGTTATGTCACGATCAGCTCG 582
|||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||
Sbjct 543 GAAAAACGGTGACGGTTCTTCTCCCAAGTCGCCAGACGGAGTTGTATCACGATCAGCTCG 602
Query 583 GAGTTCGTTTCGTGCTTTGTCTAATTGCCTTAAGGTGATTTCTTCTGGTGCTTCTACTGT 642
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TAGCTCGTTTCGTGCTTTGTCTAATTGCCTTAAGGTGATTTCTTCTGGTGCTTCTACTGT 662
Query 643 TGCTCGCTCCGCCGTATCAGCTGCTTCTTCCGCCGTTAGGGACGTTGATTCTCATCACGA 702
|||||||||||||||||| || ||||||||||||||| || | |||||||||||
Sbjct 663 TGCTCGCTCCGCCGTATCTGCCGCTTCTTCCGCCGTT---GA-----A-TCTCATCACGA 713
Query 703 TCAGGTACTATGGGCGGGGTTTGATAATCTACAGAAAGAAGATGGAGATACTCGAAGAGT 762
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 714 TCAGGTACTATGGGCGGGGTTTGATAATCTACAGAAAGAGGATGGTGATACACGAAGAGT 773
Query 763 TCTTCTACTAGCATTTAAGTCTGGATTTCAAGTTTGGGATGTTGAAGATACAGAGAATGT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TCTTCTACTAGCATTTAAGTCTGGATTTCAAGTTTGGGATGTTGAAGATACAGAGAATGT 833
Query 823 TCACGTTATAGTTTCTACACATGATGGACAAGCATTCTTTATGCAAATGCTATTGAATCC 882
||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 834 TCATGTTATAGTTTCTGCACATGATGGACAAGCATTCTTTATGCAAATGCTACTGAATCC 893
Query 883 AATAAAGTCTGGAGCTTTAGATGACAGGTTTTATAAGAGCCGTCCTCTTTTGGCTGTGTG 942
|||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 894 AATAAACTCTGGAGTTTTAGATGATAGGTTTTATAAGAGCCGTCCTCTTTTGGCTGTGTG 953
Query 943 TGGTGATTCTTGGGAAGAACATTCAAGTAAAAAGATCAGTTCTGATAACTCCGGAAGTGA 1002
|||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 954 TGGTGA---TT---------ATTCAAGTAAAAAGATCAGTTCTGATAACCCCGGAAGTGA 1001
Query 1003 AACCGTGGCTACTCCTACTAATGTCTATGTCTACTCGTTAAAGTCTCAGTCTTATGTGCA 1062
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AACCGTAGCTACTCCTACTAATGTCTATGTCTACTCGTTAAAGTCTCAGTCTTATGTGCA 1061
Query 1063 TACGCTGAAATTCCGGGCTACCATTTATTCGGTTAGGTGCTGTTCTCGGATTGTTGCTGT 1122
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1062 TACGTTGAAATTCCGGGCTACCATCTATTCGGTTAGGTGCTGTTCTCGGATTGTTGCTGT 1121
Query 1123 ACAACAAGCAGCTCAGATAGATTGCTTTGATGCTGCAACACTGGAAATGGATTACAGGAT 1182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ACTACAAGCAGCTCAGATAGATTGCTTTGATGCTGCAACACTGGAAATGGATTACAGGAT 1181
Query 1183 TGTCACTAACTCCATTGTGTGTGGCTCCTCGGGTGTTGGATATGGCCCTCTTGCAGTTGG 1242
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1182 TGTAACTAACTCCATTGTGTGTGGCTCCTTGGGTGTTGGATATGGCCCTCTTGCTGTTGG 1241
Query 1243 TCCAAGATGGATCGCGTATAGTGGAAGTCGTATTGCTACCTCAAGTTCTGCAATTTTCAC 1302
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1242 TCCACGATGGATTGCGTATAGTGGAAGTCGTATTGCTACCTCAAGTTCTGCAATTTTTAC 1301
Query 1303 TTCAGAACTTCTCTCACTGT---CATCATCACCCAGTGTTGCACAATTTGCAAGAGACTC 1359
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1302 TTCAGAAATTGTCTCACTGTCAACATCATCACCCAGTGTTGCACAATTTGCAAGAGACTC 1361
Query 1360 GAGCAAGCAGCTCGCTTCTGGGATAGTAAATCTTGGAGACAAAGGGTACAAG-TCATTGA 1418
||| |||||||| ||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct 1362 GAGTAAGCAGCTTGCTTCTGGGATAGCAAATCTTGGAGACAAAGGGTAC-AGATCATTGA 1420
Query 1419 CTCGATACTGCGCAGAGGTTCTT-CCCAATCCGTATATTCCTGGTTTGAAAAGCATTGGA 1477
|| ||||||| |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 1421 CTAAATACTGCTCAGAGGTT-TTGCCCAATCCGTATATTCCTGGTTTGAAAGGCATTGGA 1479
Query 1478 GTTGGTAATGAGAATGT-GCCAGATGCAGAGAGCATAGGAATGGTTATTGTCAAAGATAT 1536
||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GTTGGTAATGAAAAAGTAG-CAGATGCAGAGAGCATAGGAATGGTTATTGTCAAAGATAT 1538
Query 1537 CACAAACAAAAGCGTCATAACGCAGTTTAAAGCACACAAGAGTCCGATTTCAGCTTTGTG 1596
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1539 CACAAACAAAAGCGTCATAACGCAGTTTAAGGCACACAAGAGTCCGATTTCAGCTTTGTG 1598
Query 1597 CTTTGACCCAAGTGGCCTGCTTTTGGTGACTGCTTCGATTCAGGGGCACAATATTAACGT 1656
|||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1599 CTTTGACCAAAGCGGCCTGCTTTTGGTGACTGCTTCGATTCAGGGGCATAATATTAACGT 1658
Query 1657 CTTTAGAATAATGCCAACAATTTCTACAAGCAGAGCTGTGAAGAAAACGACTTTTGCCCA 1716
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1659 CTTTAGAATAATGCCAACAATCTCTACAAGCAGAGCTGTGAAGACAACGACTTTTGCCCA 1718
Query 1717 TCTGTTCAGGCTTCAGCGCGGTTTTACTAATGCGGTGATACAAGACATCTGTTTCAGC-A 1775
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1719 TCTGTTCAGGCTTCAGCGCGGTTTTACTAATGCGGTGATACAAGACATATGTTTCAGCAA 1778
Query 1776 GTGATAGCAATCTAATTGTGGTTAGCTCTTCAAGAGGGACAAGTCAT-TTGTTTGAGATA 1834
| ||||||||| | ||||||||| | ||||||||||||||||||||| || ||||||||
Sbjct 1779 G-GATAGCAATTTGATTGTGGTTGGTTCTTCAAGAGGGACAAGTCATCTT-TTTGAGATT 1836
Query 1835 AATCCTGAGAAAGAGGGGGATTCTCCGGTTCCTATGTCTGCAATCAGTAGGATAAGAAGC 1894
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1837 AATCCTGAGAAAGAGGGGGATGCTCCGGTTCCTATGTCTGCAATCAGTAGGATAAGAAGC 1896
Query 1895 GGAAACAGCAGCGGATGGATTGGGACTGTGAGCGATGCAGCTTCTGCAGCAGCTGGAATG 1954
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1897 GGAAACAGCAGCGGATGGATTGGGACTGTGAGCGGTGCAGCATCTGCAGCAGCTGGAATG 1956
Query 1955 GTTGGAGGCTCTGTTCCGGGTACAATCACATCCACTTTCTGTTACTGCGATGAAAAGAGT 2014
|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1957 GTTGCAGGCTCGGTTCCGGGTACAGTCACATCCACTTTCTGTTACTGCGATGAAAAGAGT 2016
Query 2015 AACAATAACTACTATGGTTCTGTTGCTGATATGTGCTCCAAGACGAATCTTCTGGTTTTT 2074
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2017 AACAATAACTACTATGGTTCTGTTGCTGATATGTGCTCCAAGACAAATCTTCTGGTGTTT 2076
Query 2075 GCTCCTTCTGGATGTATGACACAGTATGCATTACGGGAAAATGC-GGCTGGTGCTGGTCA 2133
||||||||||||||||||||||||||||| ||||||||| || | || ||||| ||||||
Sbjct 2077 GCTCCTTCTGGATGTATGACACAGTATGCGTTACGGGAACAT-CAGGTTGGTGTTGGTCA 2135
Query 2134 TGAGACTGCTGCGATGATGGGGTTTGACTT-TGAGTCAGGTATAGAGACTGAAGGAAAAT 2192
|||||||||||| |||| ||||||||| || |||||||||| ||||||| ||||||||||
Sbjct 2136 TGAGACTGCTGCAATGACGGGGTTTGA-TTCTGAGTCAGGTCTAGAGACAGAAGGAAAAT 2194
Query 2193 TAGCGGTAGATCCAATAAGAAGGTGGTCCATAATCCAAAACCGATCTAGAAGAGAGACGC 2252
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2195 TAGCGGTAGATCCAATAAGAAGGTGGTCCATGATCCAAAACCAATCTAGAAGAGAGACGC 2254
Query 2253 AGGATCACCACAGTGACATATATGGAGGTGGAACATCAGTGGATTCTAAAAGCAAAGTGT 2312
| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2255 ATGACCCCCACAGTGACATATATGGAGGTGGAACATCAGTGGATTCTAAAAGTAAAGTGT 2314
Query 2313 TTCCGGAGGTTGTTAGAAAACAGAGTGTTGAGGAAGCTTGGAAAGTAACTAAGAAAGGAA 2372
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2315 TTCCAGAGGTTGTTAGAAAACAAAGTGTTGAGGAAGCTTGGAAAGTATCTAAGAAAGGAA 2374
Query 2373 CGACCCATGTGGATG-ATAATCGTCATTTGTACATATTTGAAGCAGAACA---GCAAACG 2428
| |||| ||||| || |||| |||||||||||||||| |||||||||||| |||||||
Sbjct 2375 CTACCCGTGTGG-TGGATAAGCGTCATTTGTACATATATGAAGCAGAACAACAGCAAACG 2433
Query 2429 CATCTGCCGACTCAGCTACCGTTATGGGCAAGGCGAAAGTTTAGGTTTCAAAAATTGGCA 2488
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 2434 CATCTGCCGACTCAGCTACCCTTATGGGCAAGGCGAAAGTTTAGGTTTCAAGAATTGGTA 2493
Query 2489 TTGAATCGGGGTGAAGATATTAGTGGTGGAGGAGG--GG-AGATGGAGATTGAAGGAATC 2545
||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 2494 TTGAATCGGGGTGAAGAGATTAGTGGTGGAGGTGGAAGGGAGATGGAGATTGAAGGAATC 2553
Query 2546 CAAACTCGAACAATTGAAGCAAGAACAAGAGATTTGGTTCCAGTCTGGGGTTATCTCCAA 2605
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2554 CAAACTCGAACTATTGAAGCAAGAACAAGAGATTTGGTTCCAGTCTGGGGTTATCTCCAA 2613
Query 2606 TCACCAAGATCCCAACAAGTGACAAACGAATCAATGCAGAGTCCAAGTACCACTACAGAA 2665
|| ||||| || || ||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 2614 TCTCCAAGGTCTCAGCAAGTGATAAACGAATCAATACAGAGTCCAAGTACCACTACACAA 2673
Query 2666 GATGACAAAGTGGCTCCTCTGGAGGGTCATGGAACAGAGACTGATCTCGGGGCTGTACAT 2725
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2674 GATGACAAAGTGGCTACTCTGGAGGGTCATGGAACAGAGACTGATCTCGGTGCTGTACAT 2733
Query 2726 AGTGAAGAAGAGACACAAAGCGAGTCTGTAGATAAAGAAGGTATTGCAGAGGAAAAGAAT 2785
|| |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2734 AGCGAAGAACAGACACAAAGCGAGCCTGTAGATAAAGAAGGTATTGCAGAGGAGAAGAAT 2793
Query 2786 CACAGTGAAGATGAGGATGAAGAGCAAGTGGATTAGAAGATTGGTTTAtttttt-tCACA 2844
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2794 CACAGTGAAGATGAGGATGAAGAGCAAGTGGATTAGAAGATTGGTTTATTTTTTCTCACA 2853
Query 2845 CAAACTCGGCTTCAACAACAGAATAACaaaaaaataactctggaaaattgtatagaaaag 2904
|| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2854 CATACTCGACTTCAACAACAGAATAGCAAAAAAATAACTCTGGAAAATTGTATAGAAAAG 2913
Query 2905 aaaaaggaaaaTTGACATATCTTTTAGATGTAAATAGCTTTAGTACTTTTTCTTCttttt 2964
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2914 AAAGAGGAAAATTGACATATCTTTTAGATGTAAATAGCTTTAGTACTTTTTCTTCTTTTT 2973
Query 2965 tt---ACAAAATATTATTAGCCCATTGATTCATGAAC 2998
|| ||| ||||||||||||||||||||||||||||
Sbjct 2974 TTTTTACAGAATATTATTAGCCCATTGATTCATGAAC 3010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149096154596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5