BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495552
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54740.1 | Symbols: SESA5 | seed storage albumin 5 | chr5:22... 1099 0.0
> AT5G54740.1 | Symbols: SESA5 | seed storage albumin 5 | chr5:22238358-22239187
REVERSE LENGTH=830
Length=830
Score = 1099 bits (595), Expect = 0.0
Identities = 763/840 (91%), Gaps = 28/840 (3%)
Strand=Plus/Plus
Query 1 CATCCGTCACTCACCAAATACC-TCAAATCCTTAAACAAAATC-AAACCATGGCTAAGCT 58
||||| |||||| ||||| ||| | ||| |||| || |||||| |||| |||||||||||
Sbjct 4 CATCCATCACTCGCCAAAAACCTTGAAA-CCTTTAA-AAAATCGAAACTATGGCTAAGCT 61
Query 59 TATTCTCGTTTTCGCAACTCTTGCTCTCTTCATCCTCCTAGCCAACGCATCCATCTACCG 118
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 62 CATTCTCGTTTTCGCAACTCTTGCCCTCTTCATCCTCCTAGCCAACGCATCCATCTACCG 121
Query 119 CGCAGTGGTGGAGTTCGATGAAGAAGACGACGTTAGCAACCCACAACAAGATAAGTGCCA 178
| |||||||||||||||| ||||| || ||||| |||||||||||||||| |||||||||
Sbjct 122 CACAGTGGTGGAGTTCGAGGAAGATGATGACGTGAGCAACCCACAACAAGGTAAGTGCCA 181
Query 179 GAGGGAGTTTATGCAGCATCAGCAACTAAGAGGTTGCAAGCAATGGATCCGCAAGCGAGC 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 182 GAGGGAGTTTATGAAGCATCAGCAACTAAGAGGTTGCAAGCAATGGATCCGCAAGAGAGC 241
Query 239 TCAACAAGGAAGAATCGGATACGAAGCTGATGACTTTGAGCTCACTCTTGATGTTGATTT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 242 TCAACAAGGAAGAATCGGATACGAAGCTGATGACTTTGAGCTCACTCTTGATGTCGATCT 301
Query 299 TGAGGACGATGAGAACCCAACA---CCTCAACAACA-TCAACCAGCTCTTAGAATGTGTT 354
|||||||||||||||||||| ||||||||||| ||| | ||||| ||||||||
Sbjct 302 TGAGGACGATGAGAACCCAATGGGGCCTCAACAACAGTCATC----TCTTAAAATGTGTT 357
Query 355 GCAATGAGTTAAGACAAGTGGACAAGATGTGTGTGTGTCCTACACTGAAAAAGGCTGCTC 414
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 358 GTAATGAATTAAGGCAAGTGGACAAGATGTGTGTGTGTCCTACACTGAAAAAGGCGGCTC 417
Query 415 AACAAGTTAGATTCCAGGGAATGCATGGACAACAACAGATGAAACATGTGTTTCAGACTG 474
||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 418 AACAAGTCAGATTCCAGGGAATGCATGGACAGCAACAGGTGCAACATGTGTTTCAGACTG 477
Query 475 CTCAGAACTTGCCTAA-GATTTGCAAAATCCCTGCAGTTGAATCCTGCCAGTTCAAGGCA 533
|| ||||||||||||| | |||||||||||||| | |||| |||||||||||||||||||
Sbjct 478 CTAAGAACTTGCCTAACG-TTTGCAAAATCCCTACCGTTGGATCCTGCCAGTTCAAGGCA 536
Query 534 TCTCCTTACTAAGATCATGAAGAGGACCAGACTATAAAAACGCACACGTACACACATGGT 593
||||||||||| || |||||||||||||| ||||||||| | |||||||||||| ||||
Sbjct 537 TCTCCTTACTAGGACCATGAAGAGGACCAAACTATAAAAGCACACACGTACACA--TGGT 594
Query 594 GATTTTGTTAATGATAATaaaaaaaGTCTCACTCTTGTGGCGTGTTCGTGTTTGTATCGT 653
| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 595 GGTTTTGTTAATGATAATAAAAA--GTCTCTCTCTTGTGGCGTGTTCGTGTTTGTATAGT 652
Query 654 AGATATATGTTTGTACTGTACGAGTTAAGAGTCTTAGTGGCAATATTACACCTTGTAGTG 713
||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 653 AGATAAATGTTTGTACTGTATGAGTTA-GAGTCTTAGTGGCAATATTACACCTTCTAGTG 711
Query 714 TAATGTAACTTGCCCTACCCCCTTAAATAAAAGAGTGTTCTTGGGTACTCAAAA-TCTTT 772
|||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct 712 TAATGTAACTTGCCCTACCCCCTTAAATAAAAGA-TGTTCTTGGGTATTCAAAAATCTTT 770
Query 773 A--A-CAC-C--ACACTCTCT-AAGTCTCATGTTTGTGTTTTAAGAAATTATTGAGAATT 825
| | ||| | ||||||||| || ||||||||||||||| ||| |||||||||||||||
Sbjct 771 AGCATCACACTCACACTCTCTTAAATCTCATGTTTGTGTTCTAATAAATTATTGAGAATT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5