BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495559
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54780.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2344 0.0
AT4G27100.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 1238 0.0
> AT5G54780.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr5:22248447-22251863 REVERSE LENGTH=1719
Length=1719
Score = 2344 bits (1269), Expect = 0.0
Identities = 1401/1463 (96%), Gaps = 16/1463 (1%)
Strand=Plus/Plus
Query 2 AAAGAATTGATCTTTTGAGAGGGTTCCAG-ttttttt-tCTTTCTTTCTTCTCCAATCTT 59
||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||
Sbjct 9 AAAGAATTGATCTTTTGAGAGGGTTCCAGTTTTTTTTCTCTTTC-GTCTTCTCCATTCTT 67
Query 60 GTTTGTAGaaaaaaaaaaaCCCattttttgtttggatttttcatttgattttcccgggaa 119
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 68 GTTTGTAG----AAAAAAACCCATTTTTTATTTGGATTTTTCATTTGATTTTCCCGGGAA 123
Query 120 agttttcatttttatttgtttttgGGGAGGG-GATTGAAAAAATTAGCTAAAAAATGTGG 178
|||| | ||||||| || ||||| ||||| |||||||||| || | | ||||||||||
Sbjct 124 AGTTGTAATTTTTA-TT-TTTTT---GAGGGAGATTGAAAAAGTTCGAT-AAAAATGTGG 177
Query 179 GGAG-CGTTCGCAGAACCAGCAGATTCTTATTACCAGATTCGTCCTGAGTGCACTGATGT 237
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 GGAGCCG-CCGCAGAACCAGCAGATTCTTATTACCTGATTCGTCCTGAGTGCACTGATGT 236
Query 238 CCCCAATACCAAATTCAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CCCCAATACCAAATTCAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGC 296
Query 298 TGCATTTACAACAGAAGGGTTCCTCGATATTGGCAAGACTCTAAGTAGAATCCAACGAGG 357
|||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 297 TGCATTTACAACAGAAGGATTCCTTGATATTGGCAAGACTCTAAGTCGAATCCAACGAGG 356
Query 358 GGGGATCCATCCATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGGGATCCATCCATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCC 416
Query 418 AAAGAGCACATTTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTC 477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAAAAGCACATTTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTC 476
Query 478 TTGGAAGGAGGAATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACCGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 TTGGAAGGAGGAATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACTGC 536
Query 538 ACCTGTAATTACCAACAAGGGTGAACCCATTTACGATCCTATTGTTCTACAAGAAACAAA 597
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 ACCTGTAATTACCAACAAGGGTGAACCCATTTACGATCCTATTGTACTACAAGAAACAAA 596
Query 598 TTTAGGTGCAAATGGTTCGGATTTCTTCAAAGATCTTGCAAGCCGCGGACCTTTGGACAA 657
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 597 TTTAGGTGCAAATGGTTCAGATTTCTTCAAAGATCTTGCAAGCCGTGGACCTTTGGACCA 656
Query 658 GAAAGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAACCGTACAGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 657 GAAAGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAATCGCACAGA 716
Query 718 TAGGACTTTGGTATTCTATGAGAAAAAGGAGAATTTGTCTAAGCTTTGGGACATTCTTGC 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 717 TAGGACTTTGGTATTCTATGAGAAAAAGGAGAACTTGTCTAAGCTTTGGGACATTCTAGC 776
Query 778 TCTTTACGCGTGGATAGACAATGACGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTC 837
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 TCTTTACGCATGGATAGACAATGATGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTC 836
Query 838 CCCTATGATTATGCTTCTTGAAGACGAAGCTGATGCTTTTTGGTGTTTCGAACGGTTGAT 897
||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 837 CCCTATGATTATGCTTCTTGAGGACGAAGCTGATGCTTTTTGGTGTTTCGAAAGATTGAT 896
Query 898 GCGCCGATTGCGAGGGAATTTTCGGGACACGGGGAGATCAGTTGGAGTCGAAGCACAGCT 957
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 897 GCGCCGATTGCGAGGGAATTTTCGTGACACGGGGAGATCAGTTGGAGTCGAAGCACAGCT 956
Query 958 TACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCACTTAGAGAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCACTTAGAGAA 1016
Query 1018 CTTGGGTGGTGGTGACTATCTCTTTGCGATTCGAATGATAATGGTTCAGTTCCGAAGAGA 1077
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 ATTGGGTGGTGGTGACTATCTCTTTGCTATTCGAATGATAATGGTTCAGTTCCGAAGAGA 1076
Query 1078 ATTCTCTTTTTGTGACTCCTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTATGACCC 1137
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 ATTCTCCTTTTGTGACTCCTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTACGACCC 1136
Query 1138 AGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGAGAGAGAACCGAAGGTTCCTC 1197
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 TGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGAGAGAGAATCGAAGGTTCCTC 1196
Query 1198 CAAAGGTAAACCGAAGTCGATAAACCAATGTGGGAAGTACGAGAGAGAGAACATGAAGAA 1257
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 CAAAGGTAAACCAAAGTCGATAAACCAATGCGGGAAGTACGAGAGAGAGAACATGAAGAA 1256
Query 1258 TGGAGGGAAAAGTGCAGAAGGTCCTTTGCCTATTTCGGTTTTCTTAGTGGCTAGTGTTTT 1317
|||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1257 TGGAGGGAAAAGCGCGGAAGGTCCTTTGCCTATCTCTGTTTTCTTAGTGGCTAGTGTTTT 1316
Query 1318 GAAAGACAAGAGTTCCAAGCTAATGACAGAAGCTCGAGGACTTGATGACGTTGTAAAGAT 1377
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 GAAAGACAAGAGTTCTAAGTTAATGACCGAAGCTCGAGGACTTGATGACGTTGTAAAGAT 1376
Query 1378 CTTAAACGACATAACCGGAAACTTGGATGCTAAGAAAGCCTGTACTGGTGCAATGAAACT 1437
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 CTTAAACGACATAACCGGAAACTTGGATGCTAAAAAAGCCTGTACTGGTGCAATGAAACT 1436
Query 1438 TCACAAGAAGTATCTAAAAAAGG 1460
||||||||||||||| |||||||
Sbjct 1437 TCACAAGAAGTATCTTAAAAAGG 1459
Score = 237 bits (128), Expect = 3e-61
Identities = 197/227 (87%), Gaps = 17/227 (7%)
Strand=Plus/Plus
Query 1490 GCCAAGAAATAGCATTGGAGAAGATTCATGAGTAGCAGCGTTTTTGTATGTTATTATACA 1549
||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1459 GCCAAGAAATAGCATTGCAGAAGATTCACGAGTAGTAGCGTTTTTGTATGTTTTTATACA 1518
Query 1550 TATTTGATAACTCACAAAATCCGGCGAC-AAAAAGTGATTAACGATTCCTTGGGTGG-TG 1607
||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1519 TATTTGATAACTCACAAAA-CCGGCGACAAAAAAGTGACTAACGATTCCTTGGGTGGCAA 1577
Query 1608 GTAATGAAGAAAAGAAACCATGTAGCCCAACTTACACAACAACTTCTCGTTGTAAACTGT 1667
| ||| | |||||| | | ||||||| |||||||||||||||||||||||||||||
Sbjct 1578 G-AATTCTG--AAGAAA--A-G-AGCCCAATTTACACAACAACTTCTCGTTGTAAACTGT 1630
Query 1668 TCATACAA--CAA-ATTCATGTTTGTAATCTTTGTTTCACAAAACCA 1711
|||||||| | | | ||| |||||||| ||||||||||||| |||
Sbjct 1631 TCATACAAATCCACA--CAT-TTTGTAATATTTGTTTCACAAA-CCA 1673
> AT4G27100.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr4:13595561-13598565 FORWARD LENGTH=1626
Length=1626
Score = 1238 bits (670), Expect = 0.0
Identities = 1094/1294 (85%), Gaps = 47/1294 (4%)
Strand=Plus/Plus
Query 194 CCAGCAGATTCTTATTACC-AGATTCGTCCTGAGTGCACTGATGTCCCCAATACCAAATT 252
|||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| |||
Sbjct 306 CCAGCAGATTCTTACTACCAAG-TTCGTCCTGAGTGCACCGATGTCCCCAAGACCAGATT 364
Query 253 CAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGCTGCATTT--ACAACA 310
||| ||||| |||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 365 CAAAATCAAGCCTGGTAAAACTCTAAGTGTAAGAAAATGGCAGGCTGTATTTGTACAA-- 422
Query 311 GAAGGGT-TCCTCGATATTGGCAAGACTCTAAGTA-GAATCC-AACGAGGGGGGATCCAT 367
||||||| || || ||||||||||||||||||| | | |||| || ||||||| ||||||
Sbjct 423 GAAGGGTCTC-TCCATATTGGCAAGACTCTAAG-ACGCATCCGAA-GAGGGGGAATCCAT 479
Query 368 CCATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCCAAAGAGCACA 427
|||||||||||||| ||||| ||||||||| |||||||||||||||| |||| |||||||
Sbjct 480 CCATCAATTAGAGGCGAAGTATGGGAATTCCTACTTGGTTGTTATGACCCAATGAGCACA 539
Query 428 TTTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTCTTGGAAGGAG 487
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 540 TTCGAAGAAAGAGAGCAAATTCGACAACGCAGAAGATTGCAGTATGCTTCTTGGAAGGAA 599
Query 488 GAATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACCGCACCTGTAATT 547
|| ||||| ||||||||||| ||||| |||||||| |||| | ||||||||||||||||
Sbjct 600 GAGTGTAAGCAAATGTTTCCTGTCATTGGAAGTGGAAGATTTACTACCGCACCTGTAATT 659
Query 548 ACC-AACAAGGGTGAACCCATTTACGATCCTATTGTTCTACAAGAAACAAATTTAGGTGC 606
|| || || ||| |||||| || |||||| |||| || || |||| |||||||||| |
Sbjct 660 ACTGAA-AATGGTCAACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTAC 718
Query 607 AAA-T-----GGTTCGGATTTCTTCAAAGATCTTGCAAGCCGCGGACCT-TTGGACAAGA 659
||| | ||||| | ||| || ||||| || |||| || |||||| ||| | || |
Sbjct 719 AAACTCAAATGGTTCAGTTTTTTTTAAAGAGCTCACAAGTCGTGGACCTCTTG-ATAAAA 777
Query 660 AAGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAACCGTACAGATA 719
|| |||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 778 AAATTATCCAATGGCTGCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACA 837
Query 720 GGACTTTGGTATTCTATGAGAAAAAGGAGAATTTGTCTAAGCTTTGGGACATTCT-TGCT 778
|| | |||||||| ||||||||||||||||| || || ||||| ||||| ||||| | ||
Sbjct 838 GGGCCTTGGTATTTTATGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCTGT-CT 896
Query 779 CTTTACGCGTGGATAGACAATGACGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTCC 838
||||||| ||||||||||| || || || ||||| ||||||||||||||||||||||||
Sbjct 897 GTTTACGCCTGGATAGACAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCC 956
Query 839 CCTATGATTATGCTTCTTGAAGACGAAGCTGATGCTTTTTGGTGTTTCGAACGGTTGATG 898
|| |||||||| ||||||||||||||||||||||| ||||||||||| |||||| | |||
Sbjct 957 CCAATGATTATTCTTCTTGAAGACGAAGCTGATGCATTTTGGTGTTTTGAACGGCTCATG 1016
Query 899 CGCCGATTGCGAGGGAATTTTCGG-G-ACACGGGGAGATCAGTTGGAGTCGAAGCACAGC 956
|| ||||||||||| ||||| || | || |||| ||||| |||||||| ||||| || |
Sbjct 1017 CGTCGATTGCGAGGAAATTTCCGTAGTAC-CGGG-AGATCTGTTGGAGTTGAAGCTCAAC 1074
Query 957 TTACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCA-CTTAGAG 1015
||||||||||| ||||||| |||||| || ||||||||||||||||||| || || |||
Sbjct 1075 TTACTCATTTGTCTTCAATTACTCAGGTTGTTGACCCCAAACTTCACCAACATCT-AGAT 1133
Query 1016 AA-CTTGGGTGGTGGTGACTATCTCTTTGCGATTCGAATGATAATGGTTCAGTTCCGAAG 1074
|| |||||| || ||||||||||||||||| || || ||| |||||||||| ||||||||
Sbjct 1134 AAACTTGGG-GGAGGTGACTATCTCTTTGCCATCCGGATGCTAATGGTTCAATTCCGAAG 1192
Query 1075 AGAATTCTCTTTTTGTGACTC-CTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTATG 1133
||||||||| ||||| ||||| || |||||||||||||||||||||||| | |||||||
Sbjct 1193 AGAATTCTCATTTTGCGACTCTCT-GTACCTTTGGGAGATGATGTGGGCCCTCGAGTATG 1251
Query 1134 ACCCAGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGA-GAGAGAACCGAAGGT 1192
|||| || | | || | ||||||||| || ||||| || || | |||| ||| |||||
Sbjct 1252 ACCCCGATCTTTTTTATGTATATGAGGCGCATCAATGCG-GGAATGAGAAAACAGAAGGG 1310
Query 1193 TCCTCCAAAGGTAAACCGAAGTCGATAAACCAATGTGGGAAGTACGAGAGAG-AGAACAT 1251
| | ||||||||||||||||| || || |||||||| ||||| ||||| | | |||||
Sbjct 1311 T--TA-AAAGGTAAACCGAAGTCAATTAAGCAATGTGGAAAGTATGAGAG-GCAAAACAT 1366
Query 1252 GAAGAATGGAGGGAAAAGTGCAGAAGGTCCTTTGCCTATTTCGGT-TTTCTTAGTGGCTA 1310
|| ||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||| |
Sbjct 1367 GAGGAATGGAGGAAAAAGTGCAGAAGGTCCTTTACCTATATCGGTATTTCT-AGTGGCCA 1425
Query 1311 GTGTTTTGAAAGACAAGAGTTCCAAGCTAATGACAGAAGCTCGAGGACTTGATGACGTTG 1370
|||| |||||||||||||||| ||||||||||| |||||||| ||||| || || ||||
Sbjct 1426 GTGTCTTGAAAGACAAGAGTTATAAGCTAATGACTGAAGCTCGTGGACTCGACGATGTTG 1485
Query 1371 TAAAGAT-CTTAAACGACATAACCGGAAACTTGGATGCTAAGAAAGCCTGTACTGGTGCA 1429
| ||||| ||||| ||| | || || ||||||||||| || ||| | ||| |||| ||
Sbjct 1486 TTAAGATACTTAA-CGATACGACTGGGAACTTGGATGCCAAAAAAACATGTTCTGGAGCC 1544
Query 1430 ATGAAACTTCACAAGA-AGTATCTAAAAAAGGTT 1462
|| ||| ||||||||| | ||||||| |||||||
Sbjct 1545 ATAAAAATTCACAAGAGA-TATCTAAGAAAGGTT 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86395137945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5