BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495560
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 920 0.0
> AT5G54790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G50930.1);
Has 53 Blast hits to 53 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:22253986-22255663
REVERSE LENGTH=881
Length=881
Score = 920 bits (498), Expect = 0.0
Identities = 630/689 (91%), Gaps = 28/689 (4%)
Strand=Plus/Plus
Query 92 TTTTTCTCTTCCAAATTTTTCATGGAGAGTTCAATGAACAATGCCTTCATTATGGGAAAA 151
|||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 154 TTTTTCTCTTACAAAGTTTTCATGGAGAGTTCAATGAACAATGCCTTCATTATGAGCAAA 213
Query 152 CATGAAACGGCGACGTTTACAGGCGACCAAAATCCAGAAGAAAGTAGCTGGACGATGTAC 211
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 214 CATGAAACGGCCATGTTTACAGACGACCAAAATCCAGAAGAAAGTAGCTGGACGATGTAC 273
Query 212 TTTGAGGATTTCTTCGAGGCTTCTTCAAGCATAGTTGACGTCGGAGATTGCAGCTCTTCC 271
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 274 TTTGAGGATTTCTTCGAGGCTTCTTCAAGCATAGTTGACGTCGGAGATTTCAGCTCTTCC 333
Query 272 TCCGTCTCCGATGCAGCGTCGTTCGTGGCCACTAAGAAGACCCTCCACGTGTCGAAGCAA 331
|| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 334 TCTGTCTCCGACGCAGCGTCATTCGTGGCCACTAAGAAGACCCTCAACGTGTCGAAGCAA 393
Query 332 GAAGGATCTAATTTGGACATCAAGAGGACGAGAAATAGAGAGATTCCTTTTGGTCGTCGT 391
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 394 GAAGGATCTAATTTGGACATCAAGAGGACAAGAAATAGAGAGATTCCTTTTGGCCGTCAT 453
Query 392 CATGATCTTGAAGACACTGCCTCTTCTCCTTCTCATAGCCCTAACGTCTATAGCATGATG 451
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 454 CATGATCTTGAAGACACTGCCTCTTCTCCTTCTGGTAGCCCTAACGTCTATAGCATGATG 513
Query 452 AACCTACAGGACAACAACACTAGACACGGGGGTGGTATTGTGGCTGATGACGAGAAAAGA 511
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 514 AACCTACAAGACAACAACACTAGACACGGGGGTGGTATTGTGGGTGATGATGAGAAAAGA 573
Query 512 GAGAGTGCAGTGCAAAACCAAGGTGGATTATCAATAGACTTGAAGAAAAAGGGGCTTTGT 571
| ||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 574 GTGAGTGCAGTGCCAAACCAAGGTGGACTACCAATAGACTTGAAGAAAAAAGGGCTTTGT 633
Query 572 TTAGTTCCTTTGTCTATGGTCACCAATTTTCTTGGTTGATTATAAATAACAATCCTTATT 631
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 634 TTAGTTCCTTTGTCTATGGTCACCAATTTTCTTGGTTGATTATAAATAATAATCCTTA-- 691
Query 632 CATTCTTTTGGTTTCC-A-AT-ATT--------A----A---TATTT-------GGTAGA 666
|||||||||||||||| | || ||| | | ||||| ||||||
Sbjct 692 CATTCTTTTGGTTTCCTATATCATTTTTTGTTCATTTTAGAATATTTAATATTTGGTAGA 751
Query 667 ttttttt-CAGTCATATGTAATATATGTTATTCACTTAATTGTTGAGATATGCTTATGTA 725
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 752 TTTTTTTTCAGTCATATGTTATATATGTTATTCACTTAATTGTTGAGATACGCTTGTGTA 811
Query 726 ACAAATTACATATGGCATGTGAGTTTTAT 754
||||||||||||| ||||||||||| |||
Sbjct 812 ACAAATTACATATAGCATGTGAGTTGTAT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5