BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495562
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan sy... 2573 0.0
AT4G27070.1 | Symbols: TSB2 | tryptophan synthase beta-subunit ... 1327 0.0
> AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan
synthase beta-subunit 1 | chr5:22264594-22266785 REVERSE LENGTH=1671
Length=1671
Score = 2573 bits (1393), Expect = 0.0
Identities = 1545/1617 (96%), Gaps = 16/1617 (1%)
Strand=Plus/Plus
Query 1 AGAGAGATTCATTCAGTAATGGCAGCCTCAGGCACCGCTGCTACTTTCAGAGCCTCCGTT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 30 AGAGAGATTCATTCAGTAATGGCAGCCTCAGGCACCTCTGCTACTTTCAGAGCCTCCGTT 89
Query 61 TCTTCAGCTCCTTCTTCTTCTTCTTCCCAATTGACCCATTTGAGATCATCACCCTTCAAA 120
|||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 90 TCTTCAGCTCCTTC--C-TCTTCTTCCCAATTGACCCATTTGA-A--ATCACCCTTCAAA 143
Query 121 GCTCTCAAATTTACGCCTCTGCCATCGTCTCGCTCCAAG---TCATCCTTCTCCGTCTCC 177
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 144 GCTGTCAAATATACGCCTCTGCCATCGTCTCGCTCCAAGTCATCATCCTTCTCCGTCTCC 203
Query 178 TGCACTATCGCCAAAGACCCGCCTGTTCTCATGACCGCCGGATCTGACCCGACCCTGTGG 237
||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 204 TGCACCATCGCCAAGGACCCGCCTGTTCTCATGGCCGCCGGATCTGACCCGGCCCTGTGG 263
Query 238 CAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAGACC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 264 CAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAAACC 323
Query 298 CTTATGCACGCGCTCTCTGAGCTCGAATCCGCTTTCTATGCTCTCGCCACCGACGATGAT 357
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 324 CTTATGCACGCTCTATCTGAGCTTGAATCCGCTTTCTATGCTCTTGCCACCGACGATGAT 383
Query 358 TTCCAGAGGGAGTTGGCAGGGATCTTGAAAGACTATGTGGGTAGGGAAAGTCCTCTGTAT 417
|||||||| |||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 384 TTCCAGAGAGAGTTGGCTGGAATCTTGAAGGACTATGTGGGTAGAGAAAGTCCTCTGTAT 443
Query 418 TTTGCAGAGAGGCTAACAGAGCATTACCGGCGCGAGAATGGCGAAGGGCCGCTTATATAT 477
|||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 444 TTTGCAGAGAGGCTTACGGAGCATTACAGGCGCGAGAATGGCGAAGGGCCTCTTATATAC 503
Query 478 TTGAAGAGGGAAGACCTGAACCACACAGGTGCTCACAAGATTAACAATGCTGTGGCTCAG 537
|||||||| |||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 504 TTGAAGAGAGAAGACTTGAATCACACAGGAGCTCACAAGATTAACAACGCTGTGGCTCAG 563
Query 538 GCACTTCTTGCCAAGCGTTTGGGGAAGAAGAGGATTATTGCTGAGACAGGAGCGGGTCAA 597
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GCTCTTCTTGCTAAGCGGTTGGGGAAGAAGAGGATTATTGCTGAGACAGGAGCGGGTCAA 623
Query 598 CATGGTGTGGCTACAGCCACTGTGTGTGCCCGTTTTGGTCTAGAGTGTATTATCTATATG 657
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 624 CATGGTGTGGCTACAGCTACTGTGTGTGCCCGTTTTGGTTTGGAGTGTATTATCTATATG 683
Query 658 GGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTGGTGCC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 GGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTGGTGCC 743
Query 718 GAGGTGAGAGGAGTTCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAGCGATA 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAGGTGAGAGGAGTCCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAGCGATA 803
Query 778 AGAGATTGGGTGACAAATGTTGAGACTACCCATTACATATTGGGATCTGTGGCGGGTCCT 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGAGATTGGGTGACAAATGTGGAGACTACCCATTACATATTGGGATCTGTGGCGGGTCCT 863
Query 838 CATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAAGGAGA 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 864 CATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAAGGAAA 923
Query 898 CAAGCGTTGGAGAAATGGGGTGGGAAGCCGGATGTCTTGGTGGCTTGTGTCGGTGGTGGT 957
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 924 CAAGCGTTGGAGAAATGGGGCGGGAAGCCGGATGTCTTGGTGGCTTGTGTCGGTGGTGGT 983
Query 958 TCAAACGCTATGGGACTCTTCCATGAATTTGTAAATGACACAGAGGTCCGGATGATCGGT 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 984 TCAAACGCTATGGGACTCTTCCATGAATTTGTGAATGACACAGAGGTCCGGATGATCGGT 1043
Query 1018 GTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGACAAAGGGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGACAAAGGGA 1103
Query 1078 GATGTCGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGACAAATC 1137
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GATGTTGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGACAAATC 1163
Query 1138 ATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCGAGCACAGt 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCGAGCACAGT 1223
Query 1198 ttttttAAAGACATGGGACGGGCTGAATACTATAGCATAACCGATGAGGAAGCGTTGGAA 1257
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1224 TTCTTTAAAGACATGGGACGGGCTGAATACTATAGCATAACCGACGAAGAAGCGTTGGAA 1283
Query 1258 GCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTCGAGACCTCACACGCA 1317
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1284 GCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTGGAGACCTCACACGCA 1343
Query 1318 CTAGCTTACCTCGAGAAGCTGTGTCCCACATTATCGGACGGAACGAGAGTAGTATTGAAC 1377
|||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||
Sbjct 1344 CTAGCTTACCTCGAGAAGCTATGTCCCACATTATCAGACGGGACGAGAGTGGTCTTGAAC 1403
Query 1378 TTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGGCTAAATATCTTGATGTTTGAA-A 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1404 TTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGGCTAAATATCTTGATGTTTGAAGA 1463
Query 1437 GAGAAACACTTTTGTTTGTTTTTTCAGTTATTCAAGACA-A-TGAAATCCTTTTTGTACT 1494
||||||||||| ||||||||||| |||||||||| |||| | ||||||||||||||||||
Sbjct 1464 GAGAAACACTTATGTTTGTTTTT-CAGTTATTCA-GACAGAATGAAATCCTTTTTGTACT 1521
Query 1495 TGTAATCTGTTAAGTACTTTGCTTCTCTCTGGTCAGGACGTTTCCAACAAAATTGGAAAT 1554
||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1522 TGTAATCTGTTT-GTACTTTACTTCTCTCTGGTCAGTACGTTTCCAACAAAATTGGAAAT 1580
Query 1555 AGAAAAAGATTACGAAGAGAACAAAACTTGAATAAATGTATCATGAATaaaa-aaaa 1610
|||||||||||||||||||||| ||| |||||||||||||| || ||||||| ||||
Sbjct 1581 AGAAAAAGATTACGAAGAGAACGAAATTTGAATAAATGTATTATCAATAAAATAAAA 1637
> AT4G27070.1 | Symbols: TSB2 | tryptophan synthase beta-subunit
2 | chr4:13586340-13588821 FORWARD LENGTH=1854
Length=1854
Score = 1327 bits (718), Expect = 0.0
Identities = 1206/1435 (84%), Gaps = 59/1435 (4%)
Strand=Plus/Plus
Query 11 ATTCAGT-AATGG-CAGCCTCAGGCACCGCTGCTACTTTCAGAGCCTCCGTTTCTTCAGC 68
||||| | ||||| || || || |||||||||||||||||||| || | || |
Sbjct 216 ATTCACTAAATGGCCA-CCGCAAGCACCGCTGCTACTTTCAGA----CC----C-TC--C 263
Query 69 TCCTTCTTCTTCTTCTTCCCAATTGACCCATTTGAGATCATCACCCTTCAAAGCT-CTCA 127
||| | ||| |||||||| |||| |||||| |||| |||||||| |||| || | ||
Sbjct 264 TCCGT-TTCAGCTTCTTCCGAATTAACCCATCTGAG---ATCACCCTCCAAA-CTCCCCA 318
Query 128 AATTTACGCCTCTGCCATCGTCTCGCTCCA-AG---TCATC--C-TTCTCCGTCTCCTGC 180
|||||||||||||||||||| |||||| || | || || | |||||||||||||||
Sbjct 319 AATTTACGCCTCTGCCATCGGCTCGCT-CACGGTCCTCTTCTTCGTTCTCCGTCTCCTGC 377
Query 181 ACTATCGCCAAAGACCC-GCCTG-T-TC-T--C--A-T-------G----A--CCGCCGG 218
|| ||||| || ||||| | ||| | || | | | | | | |||| ||
Sbjct 378 ACCATCGCTAAGGACCCAG-CTGTTGTCATGGCGGACTCGGAGAAGATTAAGGCCGCTGG 436
Query 219 ATCTGACCCGACCCTGTGGCAACGACCCGATTCGTTCGGTCGGTTT-GGGAAGTTTGGTG 277
|||||| ||||| ||||||||||||| ||||| ||||||| |||| ||||||||||| |
Sbjct 437 ATCTGATCCGACTATGTGGCAACGACCTGATTCATTCGGTC-GTTTCGGGAAGTTTGGCG 495
Query 278 GGAAGTATGTACCTGAGACCCTTATGCACGCGCTCTCTGAGCTCGAATCCGCTTTCTATG 337
| ||||| || || || || || |||||||| |||||||| |||||| | |||||||||
Sbjct 496 GCAAGTACGTCCCCGAAACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATT 555
Query 338 CTCTCGCCACCGACGATGATTTCCAGAGGGAGTTGGCAGGGATCTTGAAAGACTATGTGG 397
| |||||||||||||| ||||||||||| || || |||| ||||||||||||||| || |
Sbjct 556 CGCTCGCCACCGACGAAGATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTG 615
Query 398 GTAGGGAAAGTCCTCTGTATTTTGCAGAGAGGCTAACAGAGCATTACCGGCGCGAGAATG 457
|| ||||||||||||| || |||||||||||||| || ||||||||||| || || || |
Sbjct 616 GTCGGGAAAGTCCTCTTTACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACG 675
Query 458 GCGAAGGGCCGCTTATATATTTGAAGAGGGAAGACCTGAACCACACAGGTGCTCACAAGA 517
| ||||||||||| ||||| | || ||||||||| |||||||||| |||||||||||||
Sbjct 676 GTGAAGGGCCGCTCATATACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGA 735
Query 518 TTAACAATGCTGTGGCTCAGGCACTTCTTGCCAAGCGTTTGGGGAAGAAGA-GGATTATT 576
| ||||| |||||||||||||| ||||| ||||||||| | || ||||| | | ||||||
Sbjct 736 TCAACAACGCTGTGGCTCAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAA-ACGAATTATT 794
Query 577 GCTGAGACAGGAGCGGGTCAACATGGTGTGGCTACAGCCACTGTGTGTGCCCGTTTTGGT 636
||||||||||| || |||||||||||||| || ||||| ||||||||||| ||||| |||
Sbjct 795 GCTGAGACAGGGGCTGGTCAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGT 854
Query 637 CTAG-AGTGTATTATCTATATGGGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTT 695
| | |||| |||||||| |||||||||||||| |||||||||||||| || ||||||||
Sbjct 855 -TTGCAGTGCATTATCTACATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTT 913
Query 696 CAGAATGCGACTTCTTGGTGCCGAGGTGAGAGGAGTTCACTCTGGAACAGCGACATTGAA 755
||||||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || ||
Sbjct 914 CAGAATGCGTCTTCTCGGTGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAA 973
Query 756 GGATGCGACATCTGAAGCGATAAGAGATTGGGTGACAAATGTTGAGACTACCCATTACAT 815
||| || || |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 974 GGACGCAACTTCTGAAGCTATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACAT 1033
Query 816 ATTGGGATCTGTGGCGGGTCCTCATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGT 875
||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1034 ATTGGGATCCGTTGCGGGTCCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGT 1093
Query 876 GATTGGTAAAGAAACAAGGAGACAAGCGTTGGAGAAATGGGGTGGGAAGCCGGATG-TCT 934
|||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||| ||
Sbjct 1094 GATTGGTAAAGAAACAAGGAAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTC- 1152
Query 935 TGGTGGCTTGTGTCGGTGGTGGTTCAAACGCTATGGGACTCTTCCATGAATTTGTAAATG 994
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1153 TGGTTGCTTGTGTCGGTGGTGGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATG 1212
Query 995 ACACAGAGGTCCGGATGATCGGTGTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAAC 1054
|||||||||| || ||||| ||||||||||| || ||||| ||||||||||| |||||||
Sbjct 1213 ACACAGAGGTTCGAATGATTGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAAC 1272
Query 1055 ACGCTGCTACATTGACAAAGGGAGATGTCGGTGTCCTCCATGGAGCTATGAGTTACTTGC 1114
| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1273 ATGCTGCCACATTGACAAAAGGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGC 1332
Query 1115 TGCAAGATGATGATGGACAAATCATTGAACCACACTCCATCAGTGCAGGATTGGACTACC 1174
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1333 TGCAAGATGATGATGGCCAAATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACC 1392
Query 1175 CTGGAGTCGGACCCGAGCACAGtttttttAAAGACATGGGACGGGCTGAATACTATAGCA 1234
||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||||
Sbjct 1393 CTGGAGTCGGACCTGAGCATAGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCG 1452
Query 1235 TAACCGATGAGGAAGCGTTGGAAGCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTC 1294
| || ||||| ||||| || ||||| |||||||||||||| ||||| |||||||| || |
Sbjct 1453 TTACTGATGAAGAAGCATTAGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCC 1512
Query 1295 CAGCACTCGAGACCTCACACGCACTAGCTTACCTCGAGAAGCTGTGTCCCACATTATCGG 1354
| ||| | ||||| || |||||| | || | || |||||||| ||||| || ||| | |
Sbjct 1513 CGGCATTGGAGACATCGCACGCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTG 1572
Query 1355 ACGGAACGAGAGTAGTATTGAACTTCAGCGGAAGAGGAGATAAAGATGTTCAGAC 1409
| ||| | ||||| ||||| |||||||| || ||||| || || |||||||||||
Sbjct 1573 ATGGAGCCAGAGTGGTATTAAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGAC 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5