BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495564
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54840.1 | Symbols: ATSGP1, SGP1 | Ras-related small GTP-bin... 1576 0.0
> AT5G54840.1 | Symbols: ATSGP1, SGP1 | Ras-related small GTP-binding
family protein | chr5:22276513-22278423 REVERSE LENGTH=1060
Length=1060
Score = 1576 bits (853), Expect = 0.0
Identities = 942/986 (96%), Gaps = 2/986 (0%)
Strand=Plus/Plus
Query 1 AAAGGGAAGACAAAAAGAAGATGTGAGCTTGTGAACGCCAAAAGATCACAtctctctctc 60
||||| ||| ||||||||||||||||||||||||| ||||||||||||||| || | ||
Sbjct 24 AAAGGAAAGGCAAAAAGAAGATGTGAGCTTGTGAATGCCAAAAGATCACATAACT-T-TC 81
Query 61 tctctGTTTCATCAATGGCCGAGAAAGTCCATGAGATCGCCGGAAAGATAACTCCTTTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TCTCTGTTTCATCAATGGCCGAGAAAGTCCATGAGATCGCCGGAAAGATAACTCCTTTCT 141
Query 121 GCCGGAAAATAGTTCACGTGAACATTAAATGGAGAATCATCGAGAGGGTATCGAtttttg 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 142 GCCGGAAAATAGTTCACGTGAACAGAAAATGGAGAATCATCGAGAGGGTATCGATCTTTG 201
Query 181 gagatttttttaggtttttATGGAGAAAAATCGTTTCTTGTTCAAGTATCATCGAAAAAC 240
||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 202 GAGATTTCTTTAGGTTTCTATGGAGAAAAATTGTTTCTTGTTCAAGTATCATCGAAAAAC 261
Query 241 CTATTCTTTACCGGCAAATCGTTCACCGGATTTCTTCAACAGCCGGTGATATCTTCGACG 300
||||||||||||||| |||||||||| ||||||||| || || || |||||||| ||||
Sbjct 262 CTATTCTTTACCGGCGAATCGTTCACAAGATTTCTTCCACCGCGGGCGATATCTTTGACG 321
Query 301 GAGACGACGACACTGCGACCGAACATACTGTTTCCAATAGAAGGTTTGGTTCAGGTTCGG 360
|||||||||| ||| |||| |||| |||||||||| |||||||||||||||| ||||||
Sbjct 322 GAGACGACGATACTACGACAGAACCTACTGTTTCCGGTAGAAGGTTTGGTTCAAGTTCGG 381
Query 361 ATTCGGATTTGGTTAGTCTCAAGATTAGTCTATTAGGCGATTGTCAAACAGGGAAGACTA 420
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 382 ATTCGGATTTGGTTAGTCTCAAGATCAGTTTATTAGGCGATTGTCAAACAGGGAAGACTA 441
Query 421 CTTTTGTAATAAAATATGTTGGAGATGAGAATCAAGGTTTCTTGGAGATGACGGGTTTGA 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 442 CTTTTGTAGTAAAATATGTTGGAGATGAGAATCAAAGTTTCTTGGAGATGACGGGTTTGA 501
Query 481 ATTTGATGGACAAAACTTTTTATGTTCAAGGAGTTACTATTTCGTTTAGCATTTGGGATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATTTGATGGACAAAACTTTTTATGTTCAAGGAGTTACTATTTCGTTTAGCATTTGGGATG 561
Query 541 TAGGAGGTGATGAAAAGAGATCAAAAGATCATATACCAATTGCTTGTAAAGATGCAGTAG 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TGGGAGGTGATGAAAAGAGATCAAAAGATCATATACCAATTGCTTGTAAAGATGCAGTAG 621
Query 601 CAATCTTGTTCATGTTTGATCTAACTAGTCGATCTACTCTTAACAGTGTCTTCGGGTGGT 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 622 CAATCTTGTTCATGTTTGATCTAACCAGTCGATCTACTCTTAACAGTGTCTTCGGGTGGT 681
Query 661 ATAGCCAGGCAAGAAAATGGAACAAGACGGCAATTCCGATTCTAATAGGAACAAAATTCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 ATAGCCAGGCAAGAAAATGGAACAAGACGGCAATTCCGATTCTAATAGGAACAAAATTCG 741
Query 721 ATGACTTTGTTCGGCTCCCACCCAATCTTCAGTGGACCATTGTCACTCAGGCAAGAGCGT 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 742 ATGACTTTGTTCGGCTCCCACCCAATCTTCAGTGGACCATCGTCACTCAGGCAAGAGCAT 801
Query 781 ACGCGAAGGTGATGAAGGCATCATTGTTCTTTTCAAGTGCAACACACAACATAAATGTGA 840
| |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 802 ATGCGAAGGTGATGAATGCGTCATTGTTCTTCTCAAGTGCGACACACAACATAAATGTGA 861
Query 841 ACAAGATCTTCAAATTCATTTTGGCTAAACTTTTTAATTTGCCTTGGAAGATTGACAGAA 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 862 ACAAGATCTTCAAATTCATTTTGGCTAGACTTTTTAATTTGCCTTGGAAGATTGACAGAA 921
Query 901 ATTTGACCCTAGGTGAACCCATTATCGACTACGATTCCTAATTTAGTCTACTTTAATTAT 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 ATTTGACCTTAGGTGAACCCATTATCGACTACGATTCCTAATTTAGTCTACTTTAATTAT 981
Query 961 TTATCATTTTTGTACATAAGTTTTTT 986
||||||||||||||||||| ||||||
Sbjct 982 TTATCATTTTTGTACATAATTTTTTT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5