BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495568
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54860.1 | Symbols: | Major facilitator superfamily protein... 2538 0.0
> AT5G54860.1 | Symbols: | Major facilitator superfamily protein
| chr5:22284581-22287206 FORWARD LENGTH=1797
Length=1797
Score = 2538 bits (1374), Expect = 0.0
Identities = 1534/1613 (95%), Gaps = 4/1613 (0%)
Strand=Plus/Plus
Query 1 AAGCCATAAATCTGGGATATCAAAAATCGTTATAAGAAGAAACAGAGAGATTGCGACGGG 60
|||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 14 AAGCAATAAATCTAGGAAATCAAAAATCGTTATAAGAAGAAACAGAGAGGTTGCGACGGA 73
Query 61 GACAAGA---TTCTGATGAACCGGAGAATCTAAGAAACGTGTTTTGTCTAATTTCTTGCG 117
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 74 GACAAGATTCTTCTGATGAACCGGAGAAGATAAGAAACGTGTTTTGTCTAATTTCTTGCG 133
Query 118 ATTATAAGATGATACATTGGTTAAAGCAGCTGCGATCGGCGTTTGGCGTCGCGTTTCTGT 177
|||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 134 ATTA-AGGATGATACATTGGTTGAAGCAGCTGCGATCGGCGTTTGGCGTCGCGTTTCTGT 192
Query 178 GGCTCGTTTGTCTCATTTACTTTACTCAGGGATTTAGATCGTTCGTGTGGACAGCAGTTT 237
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 193 GGCTCGTTTGTCTCATTTACTTCACTCAGGGATTTAGATCGTTTGTGTGGACAGCTGTTT 252
Query 238 CTTACCAGCTCAAAGACAGGCTGCAATTATCACCATCAGCTTCTCAGTTTGTCTTTTCGG 297
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 253 CGTACCAGCTCAAAGACAGGCTACAGTTATCACCATCAGCTTCTCAGTTTGTCTTTTCGG 312
Query 298 TTGCCTTTTTTCCATGGAGCATAAAACCATTATATGGAATCATATCAGATTGTATACCCA 357
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 313 TTGCCTTTTTTCCATGGAGCATAAAACCATTATATGGAATCATTTCAGATTGTATACCAA 372
Query 358 TTGGAGGGAAAAAGAGGACGCCGTATTTGGTGTTATCGACTGTGCTCTCTCTTGTGCCAT 417
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 373 TTGGAGGGAAAAAGAGGACGCCGTATTTGGTGATATCGACTGTGCTCTCTCTTGTGCCAT 432
Query 418 GGCTCTTGCTTGGTCTAGATTCAACCTCGCGAAGTTCAAGTCTTTATCTGATGATTTTCT 477
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 433 GGCTCGTGCTTGGTCTAGATTCAACCTCGAGAAGTTCAAGTCTCTATCTGATGATTTTCT 492
Query 478 TGACTGTGCAAAACCTGGGATCAGCCATGGCTGATGTTGTGATAGATGCCATGATAGCTG 537
||||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 493 TGACTGTACAAAATCTAGGATCAGCTATGGCTGATGTTGTGATTGATGCTATGATAGCTG 552
Query 538 AAGCAGTAAGACTTGAAAAGGCCTCGTTTGCTGGAGATCTTCAGTCTGTCTCATGGTTTG 597
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 553 AGGCAGTAAGACTTGAAAAGGCTTCGTTTGCTGGAGATCTTCAGTCTGTATCATGGTTTG 612
Query 598 CAATGGCTGTGGGCGGAGTATGCGGTAGTTTATTAGGAGGCTATGCATTATCCAACTTGA 657
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 613 CAATGGCTGTGGGTGGAGTATGCGGTAGTTTATTAGGAGGCTATGCGTTATCTAACTTGA 672
Query 658 AGATAGAAACAATATTCCTCCTTTTCACGGTACTACCGGCGCTACAATTACTATCATGTG 717
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 673 AGATAGAAACAATATTCCTCCTTTTCACGGTACTACCAGCGTTACAATTACTATCATGTG 732
Query 718 CTCTCGTTGAAGAAATTCCTGCTAACAATGAACCATTGCCTGAGTTGTTGGATTCGAACG 777
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 733 CTCTCGTCGAAGAAAGTCCTGCTAACAATGAACCATTGCCTGAGTTGTTGGATTCAAACG 792
Query 778 AGTTTGAAGAGAAAAGCAAGTTGAGCAATGATAACTATCGAGATACGAATAAGTCTAGTA 837
||||||||||||||||| | ||||||||||||||||| |||||||| |||||| | ||
Sbjct 793 AGTTTGAAGAGAAAAGCTTGACGAGCAATGATAACTATCCAGATACGAGTAAGTCCAATA 852
Query 838 CAAGAAGAAGGAAGGGGCAGAAGAAAGGTAAAAAAGGAGCTTCCAATGGAAAGTCTGAGA 897
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 853 CAAGAAGAAGGAAGGGGCAGAAGAAAGGTAAAAAAGGAGATTCCAACGGAAAGTCTGAGA 912
Query 898 AACAGAAGAAGCAATCAAAGTCTTTAGCTTCACAGTGGTTCCAGTCACTGAAAGCAGCCA 957
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 913 CACAGAAGAAGCAATCGAAGTCTTTAGCTTCACAGTGGTTCCAGTCACTAAAAGCAGCCA 972
Query 958 CTTTTGGTTTGGGCCGTGCGTTCAAGCAACCAATCATTTTGAGACCAATGGCGTGGTTTT 1017
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 973 CTTTTGGTTTGGGCCGTGCGTTTAAGCAACCGATCATTTTGAGACCTATGGCATGGTTTT 1032
Query 1018 TCATTGCGCATATAACTGTGCCAAATCTCTCTACGGTCATGTTCTATTACCAAACCGAGG 1077
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1033 TCATTGCACATATCACTGTGCCAAATCTCTCTACCGTCATGTTCTATTACCAAACCGAGG 1092
Query 1078 TCTTGCAATTGGATGCTGCTTTCCTAGGAACTGCCCGTGTTGTTGGTTGGTTAGGTCTCA 1137
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TCTTGCAATTAGACGCTGCTTTCCTAGGAACTGCCCGTGTTGTTGGTTGGTTAGGTCTCA 1152
Query 1138 TGTTTGGAACCTTTATCTACAATCGCTATCTGCAAGATATGACTCTACGCAAGTCTCTCT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TGTTTGGAACCTTTATCTACAATCGCTATCTGCAAGATATGACTCTACGCAAGTCTCTCC 1212
Query 1198 TGTTTGCTCACATCGGGCTGTCTATAACGATACTCCTCGATATGGTTCTAGTATCAAGAG 1257
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1213 TGTTTGCTCACATCGGGCTGTCTGTAACGATACTCCTAGATATGGTTCTAGTATCAAGAG 1272
Query 1258 CAAATGTGGGCTACGGAGTTTCAGACAAGACAATGGTGCTCTTCGGATCAGCTCTAGGTG 1317
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 CTAATGTGGGCTACGGAGTTTCAGACAAGACAATGGTGCTCTTCGGATCAGCTCTAGGTG 1332
Query 1318 ATGCCATCAATCAACTCAAATTCATGCCGTTTCTGATTTTGTCTGGTCGTCTATGTCCAC 1377
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1333 ATGCCATCAATCAACTCAAATTCATGCCGTTCCTGATCTTGTCTGGTCGTCTATGTCCAC 1392
Query 1378 CTGGGATCGAAGGAACACTCTTTGCGCTGTTTATGTCGATAAACAACCTAGGAAACACAG 1437
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 CTGGGATTGAAGGAACACTGTTTGCGCTGTTTATGTCGATAAACAACCTAGGAAACACAG 1452
Query 1438 TTGGGTCGTTCATGGGAGCAGGATTGGCTTCACTTCTGGGAATATCTTCGGGGTCATTTG 1497
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1453 TTGGATCGTTCATGGGAGCAGGATTGGCTTCACTTCTGGGAATATCGTCAGGGTCGTTTG 1512
Query 1498 AGAATATGTTTATGGGCTTAGCCATTCAAGTGTTTTGCACTTATATACCTGTTTTGTTTC 1557
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1513 ACAATATGTTTATGGGCTTAGCCATTCAAGTGTTTTGCACTTATATACCCGTTTTGTTTC 1572
Query 1558 TTTTCTTGATTCCCAAAGAAGCTACAGGAGTATCAGCATCATAGAGCAGAGAG 1610
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1573 TTTTCTTGATTCCCAAAGAAGCTACAGGAGTATCAGCATCATAGGGCAGAGAG 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80722476360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5