BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495572
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 4... 1803 0.0
> AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein
45A | chr5:22295383-22298346 FORWARD LENGTH=1413
Length=1413
Score = 1803 bits (976), Expect = 0.0
Identities = 1288/1426 (90%), Gaps = 72/1426 (5%)
Strand=Plus/Plus
Query 1 GTTTTTTAAT-TCCGTCGTAGTGATGCAGCACCCACCGTCAAACGCCGCCGGAGCAGGAC 59
||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 9 GTTTTTT--TGTCCGTCGTAGTGATGCAGCAACCACCGTCAAACGCCGCCGGAGCTGGAC 66
Query 60 AAATACCATCGGGAcagcagcagttgtggataatgatgcaacagcagcaacagcagcagc 119
| |||||||| ||||| ||||| |||||| |||||| | || | | |||||||
Sbjct 67 AGATACCATCAGGACAACAGCATTTGTGG---ATGATG----A--TGC-A-A-CAGCAGC 114
Query 120 agcagcagcagcagcagcagcagAGGCAGTCTGCGGCGACACTAGGTCAACATCAGTACG 179
|||||||||||||| | || | | |||||||||| |||||||||||||||||||||
Sbjct 115 AGCAGCAGCAGCAG-A--TGC--A-GTTGTCTGCGGCGCCACTAGGTCAACATCAGTACG 168
Query 180 GTGTTGGATCTCAGAATCCAGGATCCG--A--G--GTCAAATCGTTGTGGATCGGAGACT 233
|| |||||||||||||||||||||||| | | || || |||||||||||||||||||
Sbjct 169 GTATTGGATCTCAGAATCCAGGATCCGCTAGCGATGTTAAGTCGTTGTGGATCGGAGACT 228
Query 234 TGCAGCAATGGATGGACGAGAACTACATCATGAGCGTCTTTAATCAGTCTGGCGAGGCTC 293
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 229 TGCAGCAATGGATGGACGAGAACTACATCATGAGCGTCTTTGCTCAGTCTGGCGAGGCT- 287
Query 294 A-ATCGGCTAAAGTCATTCGTAATAAGCAGACGGGACAATCTGAAGGTTATGGATTCATT 352
| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 288 ACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGTTATGGATTCATT 347
Query 353 GAGTTTGTCAACCATTCTGTAGCTGAACGGGTTTTGCAGACTTACAATGGTGCTCAAATG 412
||||| |||| ||| |||||||| || |||||||||||||||||||||||||||| |||
Sbjct 348 GAGTTCGTCAGCCACTCTGTAGCAGAGCGGGTTTTGCAGACTTACAATGGTGCTCCCATG 407
Query 413 CCTAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGCCGGGGCTGGAGAGAAACGA 472
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 408 CCGAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGCTGGGGCTGGAGAGAAACGA 467
Query 473 CACCAGACTGAAGGGCCTGACCATACAATTTTCGTAGGCGACTTGGCACCTGAGGTGACT 532
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 468 TTCCAGACTGAAGGGCCTGACCATACCATTTTCGTAGGTGACTTGGCACCTGAGGTGACT 527
Query 533 GACTACATGCTCTCGGATACATTCAAGAATGTGTATGGGTCTGTCAAGGGGGCTAAAGTT 592
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 GACTATATGCTCTCGGACACATTCAAGAATGTGTATGGGTCTGTCAAAGGGGCTAAAGTT 587
Query 593 GTGGTTGACAGGACCACTGGAAGGTCCAAGGGCTATGGGTTTGTCAGGTTTGCGGACGAA 652
||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 588 GTGCTTGACAGGACCACTGGAAGGTCCAAGGGGTATGGGTTTGTTAGGTTTGCGGATGAA 647
Query 653 AATGAGCAGATGCGTGCCATGACCGAAATGAATGGTCAATACTGCTCGACCAGGCCTATG 712
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 648 AATGAGCAGATGCGTGCCATGACTGAAATGAATGGTCAATACTGCTCGACAAGGCCTATG 707
Query 713 CGTATTGGTCCGGCTGCCAATAAGAATGCTCTTCCGATGCAACCAGCTATGTATCAAAAC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CGTATTGGTCCGGCTGCCAATAAGAATGCTCTTCCGATGCAACCAGCTATGTATCAAAAC 767
Query 773 ACTCAAGGAGGAAATGCTGGCGATAGCGATCCAAATAACACAACAATTTTTGTTGGAGGT 832
|||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 768 ACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAATTTTTGTTGGAGGT 827
Query 833 CTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGGGAACTT 892
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 828 CTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGTGAACTT 887
Query 893 CTTCATGTAAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAGGGCG 952
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 888 CTTCATGTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAGGCG 947
Query 953 ACTGCAGAGCATGCACTTTCGGTACTGAATGGAACACAATTAGGTGGACAAAGCATCCGT 1012
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 948 TCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGGACAAAGCATCCGT 1007
Query 1013 CTTTCGTGGGGACGTAGTCCAAACAAGCAGCCTGATCAAGCGCAATGGAACGGTGGTGGA 1072
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1008 CTTTCGTGGGGACGTAGTCCAAACAAGCAGTCTGATCAAGCGCAATGGAACGGTGGTGGA 1067
Query 1073 TACTATGGATACCCTCCACAGCCACAGGGCGGCTATGAACCATATGGTTATGCAGCTCAA 1132
||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1068 TACTATGGATACCCTCCACAGCCACAGGGCGGCTATG--------G-TTATGCAGCTCAA 1118
Query 1133 CCT--AA-TCAGGATCCTAATGCGTACTATGGCGGTTACACTGGCTATGGCAACTATCAG 1189
|| || ||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1119 CCACCAACTCAAGACCCTAATGCGTACTATGGTGGTTACACTGGCTATGGCAACTATCAG 1178
Query 1190 CAGCAACGTCAGGTAACTCAATTACACTGATGAAACATCAACATCAGCTTTTTCTACCAA 1249
|||||||||||| | || || |||||||||||||| ||||||||||
Sbjct 1179 CAGCAACGTCAG-T--------------GA--AA-CATCAACATCAGCTATTTCTACCAA 1220
Query 1250 TGTCTTGGAACAAAAGATGTGTC-ATTAAGTCtttttaggacttttagattttaagagtg 1308
||||||||||||||||||| | | ||| ||||| ||||||||| |||||| || ||||
Sbjct 1221 TGTCTTGGAACAAAAGATGAG-CGATTGTGTCTTATTAGGACTTCTAGATTA-AA-AGTG 1277
Query 1309 ctctctttttactagatgtgagttttattttGCAAATGAGT--ATCTTGGATTTGCTATG 1366
|||||||||| | | ||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1278 CTCTCTTTTTG-T---T-TGAGTTTTATTTTGCAAATGAGTCGATCTTGAATTTGCTATG 1332
Query 1367 AACAAATTGTTGGA-TGAATGTTGAAACTTTATTCTGTTGTTTTTT 1411
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 1333 AACAAAGTGTTT-ACTGAATGTTGAAACTTTATTCTGTTGTTTTTT 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5