BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495573
Length=2293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 3598 0.0
> AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298557-22301719 REVERSE LENGTH=2331
Length=2331
Score = 3598 bits (1948), Expect = 0.0
Identities = 2181/2295 (95%), Gaps = 10/2295 (0%)
Strand=Plus/Plus
Query 1 ATGGTAAAACTTAAGAAGACCAAGGGAATGCGGAAGCAGATTCGTCTCAACGAAGTCGAA 60
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGTAAAAATTAAGAAGACTAAGGGAATGAGGAAGCAGATTCGTCTCAACGAAGTCGAA 60
Query 61 GAAATAAATCTTCTAAACCAGTGGATCGAATCACAAAAACCGGATTCAGGATCCAATCCA 120
|||||||||||||| || ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 61 GAAATAAATCTTCTGAAGCAGTGGATCGAATCACAGAAACCGGATTCAGGATTCAATCCA 120
Query 121 CTTTCATTACGTCCTCTTCCTAAAGATTCGAAGATAGGAAAGTTCGAAGACGGCAAAAAC 180
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 121 CTTTCATTGCGTCCTCTTCCTAAAGATTCGAAGATCGGAAAGTCCGAAGACGGCAAAAAC 180
Query 181 GGCACCGTTTTCTCGCGGTACGCAGGTGTAAGGAAGTTTGCTCAGTTACCGATATCGGAT 240
|||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 181 GGCACCGTTTTCTCTCGGTATGCAGGTGTGAGGAAGTTTGCTCAGTTACCTATATCGGAT 240
Query 241 AAAACAAAAAGAGGATTGAAAGATGCGAAATACGTTGACATGACTGATGTTCAGAGGGCT 300
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 AAAACGAAAAGAGGATTGAAAGATGCGAAATACGTTGATATGACTGATGTTCAGAGTGCT 300
Query 301 GCTATTCCTCATGCTTTATGTGGAAGAGATATTCTCGGTGCTGCTAGAACTGGCTCTGGC 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 301 GCTATTCCTCATGCTTTATGTGGAAGAGATATTCTTGGTGCTGCTAGAACTGGGTCTGGC 360
Query 361 AAAACTCTAGCTTTTGTTATTCCGATTCTGGAGAAGTTACATAGGGAGAGATGGAGTCCG 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAACTCTGGCTTTTGTTATTCCGATTCTGGAGAAGTTACATAGGGAGAGATGGAGTCCT 420
Query 421 GAAGATGGAGTGGGATGCATAATTATATCTCCAACAAGGGAATTGGCAGCTCAAACTTTC 480
|||||||| |||||||| |||||||||||||||||||||||||||||||| || || |||
Sbjct 421 GAAGATGGTGTGGGATGTATAATTATATCTCCAACAAGGGAATTGGCAGCCCAGACATTC 480
Query 481 AGTGTTTTGAATAAAGTAGGAAAGTTTCATAAGTTTAGTGCGGGGCTCTTAATTGGTGGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTGTTTTGAATAAAGTAGGAAAGTTTCATAAGTTTAGTGCGGGGCTCTTAATTGGTGGT 540
Query 541 CGTGAAGGAGTTGACGTTGAGAAGGAGCGAGTTAACGAGATGAATATTTTGGTATGTGCT 600
|||||||||||||| |||||||||||| ||||| | ||||||||||||||||| ||||||
Sbjct 541 CGTGAAGGAGTTGATGTTGAGAAGGAGAGAGTTCATGAGATGAATATTTTGGTGTGTGCT 600
Query 601 CCTGGTAGGCTTCTTCAGCATATGGATGAGACCCCAAACTTCGAATGTTCACATCTTCAG 660
|||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||
Sbjct 601 CCTGGTAGGCTTCTTCAGCACATGGATGAGACTCCAAACTTCGAATGTCCACAGCTTCAG 660
Query 661 ATTCTGATTTTAGATGAGGCCGACCGTGTTCTTGATTCTGCGTTCAAGGGGCAGTTGGAT 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 ATTCTGATTTTAGATGAGGCCGACCGTGTCCTTGATTCTGCGTTCAAGGGGCAGTTGGAT 720
Query 721 CCTATAATCTCACAGTTGCCGAAGCACAGACAAACTTTGCTTTTCTCTGCAACCCAAACT 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 721 CCTATAATCTCACAGTTGCCTAAGCACAGACAAACTTTGCTTTTCTCTGCAACTCAAACT 780
Query 781 AAGAAAGTCAAGGATCTAGCAAGACTCAGTTTGAGAGATCCTGAGTACATTAGTGTACAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGAAAGTCAAGGATCTAGCAAGACTCAGTTTGAGAGATCCTGAGTACATTAGTGTACAT 840
Query 841 GAAGAGGCGCTTACAGCTACTCCAGCTTCCTTGATGCAGACTGTGATGATTGTCCCAGTT 900
| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGAGGCGGTTACAGCTACTCCAACTTCCTTGATGCAGACTGTGATGATTGTCCCAGTT 900
Query 901 GAAAAGAAATTAGACATGCTATGGAGCTTCATCAAAACTCACCTTAATTCCAGGATTCTT 960
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 GAAAAGAAATTAGACATGTTATGGAGTTTCATCAAAACTCACCTTAATTCCAGGATTCTT 960
Query 961 GTTTTTCTCTCCACCAAGAAACAGGTCAAATTTGTTCATGAAGCATTCAACAAGCTCCGG 1020
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 GTTTTCCTCTCCACCAAGAAACAGGTCAAATTTGTGCATGAAGCATTCAACAAGCTCCGG 1020
Query 1021 CCTGGAATACCTTTGAAGAGCCTTCATGGAAAAATGAGTCAGGAGAAAAGGATGGGAGTG 1080
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 CCTGGAATACCTTTGAAGAGTCTTCATGGAAAAATGAGTCAGGAAAAAAGGATGGGAGTG 1080
Query 1081 TACTCTCAGTTCATTGAGAGACAATCAGTTCTGTTCTGTACCGATGTTCTTGCCAGAGGT 1140
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1081 TACTCTCAGTTCATTGAGAGACAATCAGTTCTGTTCTGTACTGATGTTCTTGCTAGAGGT 1140
Query 1141 CTTGATTTTGATAAGGCTGTGGACTGGGTTGTTCAGGTGGATTGTCCTGAAGATGTAGCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTGATTTTGATAAGGCTGTGGACTGGGTTGTTCAGGTGGATTGTCCTGAAGATGTAGCT 1200
Query 1201 TCTTATATTCACCGAGTTGGGCGTACAGCTCGTTTCTATACTCAAGGGAAGTCGCTCCTC 1260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCTTATATTCACCGGGTTGGGCGTACAGCTCGTTTCTATACTCAAGGGAAGTCGCTCCTC 1260
Query 1261 TTTCTGACACCTTCAGAGGAAAAAATGATTGAGAAATTACAAGAAGCTAAAGTGCCTGTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 TTTCTGACACCTTCAGAGGAAAAAATGATTGAGAAATTACAAGAAGCTAAAGTGCCTATA 1320
Query 1321 AAACTCATCAAGGCAAACAACCAAAGGTTGCAGGAGGTTTCTAGGCTTTTGGCTGCTTTG 1380
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1321 AAACTCATCAAGGCAAACAACCAAAAGTTGCAGGAGGTTTCTAGGCTCTTGGCTGCTTTG 1380
Query 1381 TTAGTCAAGTATCCAGATCTTCAAGGTGTTGCTCAGAGAGCCTTCATCACATATTTGAGG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTAGTCAAGTATCCAGATCTTCAAGGTGTTGCTCAGAGAGCCTTCATCACATATTTGAGG 1440
Query 1441 TCCATCCACAAAAGAAGAGATAAAGAGATTTTTGATGTGTCAAAGCTGTCCATTGAAAAC 1500
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1441 TCCATCCACAAAAGAAGGGACAAAGAGATTTTTGATGTGTCAAAGCTGTCGATTGAAAAC 1500
Query 1501 TTTTCTGCTTCACTTGGTCTGCCAATGACTCCAAGAATCCGATTCACAAACCTTAAAACG 1560
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 TTTTCTGCTTCACTTGGTCTGCCAATGACTCCCAGAATCCGATTCACAAACCTTAAAACG 1560
Query 1561 AAGAAAAAGGGGGTCTTTGAGAGTTCTATCGCTATGGAGCCTGAGAATGCACAGGAATAT 1620
|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1561 AAGAAAAAGGGGGTATATGAGAGTTCTATCGCTATGGAGATTGAGAATGCACAGGAATAT 1620
Query 1621 GAAGCACCTCTGGTTGTaaaaaaaGATCTTCTTGGTGAAGATTTAGAGGAAGAAGATTTT 1680
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1621 GAAGCACCTCTGGTTGTCAAAAAAGATCTTCTTGGTGAAGATTTAGAAGAAGAGGATTTT 1680
Query 1681 GCTCTCAAGCCACGTGGAGAGGGAAAAGAAGTAGAAAAATCAACCAAGGAAGAAGAAGTT 1740
||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1681 GCTCTCAAGCCACGTAAAGAGGGCAAAGTAGTAGAAAAATCAACCAAGGAAGAAGAAGTT 1740
Query 1741 CCCATACAAGGAACTCGGGTTTTGAAAAACAAGAAGCTGAAGATCAATCTACACAGACCA 1800
| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CTCATACCAGGAAATCGTGTTTTGAAAAACAAGAAGCTGAAGATCAATCTACACAGACCA 1800
Query 1801 TTTGGGTCGAGGGTTGTGCTTGATGAGGAAGGCAATTCTTTGGCTCCCTTAGCAAGTGTA 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTTGGGTCGAGGGTTGTGCTTGATGAGGAAGGCAATTCTTTGGCTCCCTTAGCAAGTGTA 1860
Query 1861 GCTGCTGCAGCAGGGACTGAAGTAGCCCTTGATGAAGAGAAAAGGAAGGATTTCTATAAG 1920
||||||| |||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 1861 GCTGCTGAAGCAGGGACTGAAGTAGCCCTTGATGAAGAGAGAATGAATGATTACTATAAG 1920
Query 1921 AAAGTGGGAGCGGAAATGAGGAAAGCTGATGCGGTCGACaagaaagtagagagggaaaag 1980
|||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |
Sbjct 1921 AAAGTGGGAGCGGAAATGAGGAAAGCTGATATAGAGGACAAGAAAGTAGACAAGGAAAGG 1980
Query 1981 aggagggaaaagagaatgaaacagaagattaagaggaagagaggagccatggaggatgaa 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 AGGAGGGAAAAGAGAATGAAACAGAAGATTAAGAGGAAGAGAGGAGCCATGGAGGATGAA 2040
Query 2041 gaagaagaagaagaagaagaagaagGCCATGATGGTTCTGGATCATCAGCTGAAGAAACA 2100
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 2041 GAAGAAGAAGAAGAAGAAGA------CCATGATGGTTCTGGATCATCAGATGATGAAACT 2094
Query 2101 GGAAGAAACCGCAAAAGAGCAAAGAAGATCATCTCTGACAATGAAGAAAATGAAGGAAAA 2160
||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||
Sbjct 2095 GGAAGAAACAGCAAAAGAGCAAAGAAAATCGTCTCTGACAATGAAGAAAATGGAGGAAAA 2154
Query 2161 ATCAACACAGATTCTCTTTCCGTAGCTGAGCTTGAAGAAATGGCTCTCAAATTTATAACG 2220
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2155 ATCAATACAGATTCTCTTTCCGTAGCTGATCTTGAAGAAATGGCTCTCAAATTCATAACG 2214
Query 2221 CAATGATAAGATCTCAATA-GAC-ATTTTAAATTTATATCAATTCTGTGGAAAATTTTGT 2278
|||||||||||||| ||| | | || || |||| |||| ||||||||||||||||||
Sbjct 2215 CAATGATAAGATCTTAATTCGTGTAGTT-AA-TTTACATCAGTTCTGTGGAAAATTTTGT 2272
Query 2279 GATTCGTTTCCACCT 2293
|||| ||||||||||
Sbjct 2273 GATTTGTTTCCACCT 2287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113804635515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5