BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495575
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54920.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1847 0.0
> AT5G54920.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22302001-22305795
FORWARD LENGTH=1898
Length=1898
Score = 1847 bits (1000), Expect = 0.0
Identities = 1182/1269 (93%), Gaps = 16/1269 (1%)
Strand=Plus/Plus
Query 517 ATTCTGGCAAGAACAGAAGGGGCACTAATCGTAGAAGGAATTCCGCAAAACGTGAAAATC 576
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 499 ATTCTGGCAAGAACAGAAGGGGCACTAATCGTAGAAGGAATTCCGCGAAACGTGAAAATT 558
Query 577 GTTTGGAAAATAAAGCAAGAACCTTGGCATCTGGGAAGGTAAACGGAACCGCAGGTGCCA 636
||||||||| |||||||||||||||| ||||| || || | | |||||||||||||
Sbjct 559 GTTTGGAAAGTAAAGCAAGAACCTTGACATCT-GG--GG---A--G-ACCGCAGGTGCCA 609
Query 637 TGAAAAAGCCAGGGGA-AAGAGATGAGGTTGGTATTTTACAGAACAAACATCATCCTAGC 695
||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 610 TGAAAGAGCCA-GGGAGAAGAGATGAGGTTGGTATTTTACAGAACAAATATCATCCTAGC 668
Query 696 TCACTGAACCATCAACGACAGGCAGGAGCCCGCATTTTGAAGCACAGTaaaaaaaaTACT 755
|||||||||||||||||||||||||||| ||||||||||||| | || ||||||| ||||
Sbjct 669 TCACTGAACCATCAACGACAGGCAGGAGTCCGCATTTTGAAGAATAGCAAAAAAATTACT 728
Query 756 GACGTTCATCAGGAGGATAACGTTGAAGCCAGAAGCTCAAGTTGTAGCTTGGACAACATG 815
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GATGTTCATCAGGAGGATAACGTTGAAGCCAGAAGCTCAAGTTGTAGCTTGGACAACATG 788
Query 816 TCTGAACGTGTAAAACCGATGGGACAAGAGAATACTATGCCGGAACCTTCTAGTAATGGT 875
|||||||||||||| ||||| | ||||||||| | ||||||||||||||||||||||||
Sbjct 789 TCTGAACGTGTAAAGCCGATAGAACAAGAGAA-A--ATGCCGGAACCTTCTAGTAATGGT 845
Query 876 TTTCACGATGCTGCAGAAAGGCCCTCGTCAACTGAAAATTCTTCATCACAGAGCACAACT 935
|||||||||||| | || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 846 TTTCACGATGCTACGGAGAGACCCTCGTCAACTGAAAATTCTTCATCACAGAGCACTACT 905
Query 936 CTGGTTGAAAACTCAGAAATGAGTCGGGTTTTGGTGGCATCTACAAATAGGTTACCACCT 995
||| ||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||
Sbjct 906 GTGGATGAAAACTCAGAAGTGAGTCTGGTTTTGGTGGTATCTACAAATAGCTTACCACCT 965
Query 996 ATGCAGGCAACTGACCCTGACCAA-AAGGCTAAGGAGTTTAAGCTGAATCCAGGAGCGAA 1054
| ||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||| ||
Sbjct 966 ACGCAGGCAACAGACCCTGA-CAAGAAGGCTAAGGAGTTTAAACTGAATCCAGGAGCAAA 1024
Query 1055 GACTTTCTCTCCATCTCTTGCAAAACGTCTTACGTCAGCTCATGATGGTATGACGCCTGT 1114
|||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1025 GACTTTTTCCCCATCTCTTGCAAAACGTCTTACATCAGCTCATGCCGGTATGACGCCTGT 1084
Query 1115 TGTTGCAAATATGGGTTATGTGCCAAGCAATACTCCTATGTTACCAGTTCCTGAAGTTGT 1174
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1085 TGTTGCGAATATGGGTTATGTGCCAAGCAATACTCCTATGTTACCAGTTCCAGAAGCTGT 1144
Query 1175 TCAACCGGAAATTGGAGTCAGCCCTTTGTTGTCTCATGCATCTTCACCTTCCAAGTTTGT 1234
|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1145 TCAACCAGAAATTGGAATCAGCCCTTTCTTGTCTCATGCATCTTCACCTTCCAAGTTTGT 1204
Query 1235 TCCGTACACTAATTTGGCTACTGGGAATACTGGTGGTGGATCTCATTTTCCTCAACATAT 1294
|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 1205 TCCGTACACTAATTTGGCTACTGGAAATGCTGGTGGTGGATCTCATTTTCCCCAACATAT 1264
Query 1295 GGTTGGACCAACTATTAACAGGGGACAGCCACATAGATTCACCACTCAGTACCATTCTGT 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GGTTGGACCAACTATTAACAGGGGACAGCCACATAGATTCACCACTCAGTACCATTCTGT 1324
Query 1355 TCAAGCCACACCAATGTTTGTAAATCCCAATCCTCAGGTGATGGTCGGGAGATCGGGACA 1414
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1325 TCAACCCACACCAATGCTTGTAAATCCCAATCCTCAGGTGATGGTCGGGAGATCAGGACA 1384
Query 1415 GCTTATGTATATGCAACCAATTTCTCAGGATTTGGTTCAAGGAGCACCACATAACTCACA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GCTTATGTATATGCAACCAATTTCTCAGGATTTGGTTCAAGGAGCACCACATAACTCACA 1444
Query 1475 TTTGCCTCCTCGTCCTCTCTTTGCTCCCCAACAGCTTCAATATCCAAAGCATCAAAGTCT 1534
|||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||
Sbjct 1445 TTTGCCTCCTCGTCCTCTCTTTACTCCCCAACAGTTTCAGTATCCAAAGCATCAGAGTCT 1504
Query 1535 AATCGCAACTGGTCAACCGATGCAGCTCTACGCTCCACAACCGTTTGCAGCCAATGGACA 1594
|||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct 1505 AATCGCAACTGGTCAACCGATGCATCTATATGCTCCACAACCATTTGCAGCCAATGGACA 1564
Query 1595 TCAGCCTTACACAATCATGCCTACTGATATTCCAGTTATGCAGCCACCTTTTCCCATTAA 1654
||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 1565 TCAGCCTTACACAGTCATGCCTACCGATATTCCGGTTATGCAGTCACCTTTTCCCATTAA 1624
Query 1655 CAGGGTCATACCAATTCCGGTGCCTAATGGTTTCTATGGCACAAAGTTTCAATAGGAAGT 1714
| ||| ||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 1625 CCGGGCCATGCCAATTCCGGTTCCTAATGGTTTCTATGGCACAAAGTTTCTATAGAAAGT 1684
Query 1715 CTTGTTTTTCATCTTCATTACCTTATCACTTACCTCCCAGCACAATAAGTTTTTGATCCA 1774
|||||||||||||||||||||||||| | || ||||||||| |||||||||||||| ||
Sbjct 1685 CTTGTTTTTCATCTTCATTACCTTATTATTTGCCTCCCAGCTTAATAAGTTTTTGATACA 1744
Query 1775 TAGTTAAAA 1783
|||||||||
Sbjct 1745 TAGTTAAAA 1753
Score = 660 bits (357), Expect = 0.0
Identities = 446/488 (91%), Gaps = 9/488 (2%)
Strand=Plus/Plus
Query 1 TTTGTCTTCGTCTTCTTTTGTTGCG-ACATACACACACATATATACATACATGCGAGTAC 59
||||||||||||||||||||||| | || | | | ||||||||| ||| ||||||||||
Sbjct 10 TTTGTCTTCGTCTTCTTTTGTTGTGAACTTGC-GATACATATATATATAGATGCGAGTAC 68
Query 60 ACCGGACTGTG-AATTTCCCGATA-AAATTAAATTGATTTGAACATGGCAATCGCGAAGA 117
||||||||||| ||||| || | |||| | |||||||||| ||||||||||||||||
Sbjct 69 ACCGGACTGTGAAATTT-TGGA-ACGAATTGATTTGATTTGAATATGGCAATCGCGAAGA 126
Query 118 AATTGGAAGATGAGATCTCTCGCTCTTCTCCTTCG---TCATCATCATCGCTGAACGAGG 174
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
Sbjct 127 AATTGGAAAATGAGATCTCACGCTCTTCTCCTTCGTCATCATCATCATCGCTGAACGAAG 186
Query 175 CTCTGTTATTCTCTACTATGTGTATCATCGGCTTACAAGTCCATGTGCACATCAGCGATG 234
|||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 187 CTCTGTTAATCTCTACTATGTGTATCATCGGCTTACAAGTCCATGTGCATATCAACGATG 246
Query 235 GCTCAGTTTTTTCTGGGATATTCTACACCATCTCTCTTGAGAACGAATTCAGCATTGTGT 294
|||| || |||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 247 GCTCTGTGTTTTCTGGGATATTCTACACTGTCTCTCTTGAGAATGAATTCAGTATTGTGT 306
Query 295 TGAAGAATGCAAAACTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGCAAGTGGGAAGA 354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 307 TGAAGAATGCAAAACTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGAAAGTGGGAAGA 366
Query 355 TTGTGGAGACACTTGTGATTTTGTCTTCTAATATTGTTCAAATTGTTGCGGAGGGAGTCT 414
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 367 TTGTGGAGACACTTGTGATTTTGTCTTCCAATATTGTTCAAATTGTTGCAGAGGGAGTCT 426
Query 415 CGCTTTCGTCCAATGTTGCAGGCGAGATGGAGGGTGAAAATGTTGTCTCGGCCGTGGGAG 474
|||||||||||||||||||||| ||||| |||||||||||||| || |||||||||| ||
Sbjct 427 CGCTTTCGTCCAATGTTGCAGGGGAGATTGAGGGTGAAAATGTCGTGTCGGCCGTGGCAG 486
Query 475 TTTCTTCC 482
||||||||
Sbjct 487 TTTCTTCC 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5