BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495580

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54970.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   869    0.0  


> AT5G54970.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G26960.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:22313210-22313764 FORWARD LENGTH=555
Length=555

 Score =  869 bits (470),  Expect = 0.0
 Identities = 525/551 (95%), Gaps = 5/551 (1%)
 Strand=Plus/Plus

Query  3    CTCTCTCTGAATCCTCAGATTCTTCTATCTCTTTCACCAAGCTTAACCAAATCGTAACCA  62
            ||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  5    CTCTCTC-G-ATCATCAGATTCTTCAATCTCTTTCACCAAGCTTAACCAAATCGTTACCA  62

Query  63   TGAAGGATATCTCTAAATCTCCGGCGAGAAGAAGCGACGGATACCACCGCTACTTAAAAC  122
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  63   TGAAGGATATCTCTAAATCTCCGGCGAGAAGAAGCGACGGATTCCACCGCTACTTAAAAC  122

Query  123  CAGGAGCGCTTGCTCAGATCCGAAACTCGAGAATCAACGCTAGATCTACTACATCTCTCG  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  CAGGAGCGCTTGCTCAGATCCGAAACTCGAGAATCAACGCTAGATCTACTACATCTCTCG  182

Query  183  TATCTCGATCCTCCCTCTCGCAACTACTAGATCCGATTTCACCATCTCAGAACTCTGTTG  242
            ||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||| ||||
Sbjct  183  TATCTCGCTCCTCCCTCTCGCAGCTAGTAGATCCGATTTCACCATCTGAGAACTCGGTTG  242

Query  243  ATGAAGCAGCGGCGGC---GCGAAACCTGACGATAGATCAGGTACCACATCTTCTAAGAA  299
            |||||||||| |||||   ||| || ||||||||||||||||||||||||||||||||||
Sbjct  243  ATGAAGCAGCAGCGGCTTCGCGGAATCTGACGATAGATCAGGTACCACATCTTCTAAGAA  302

Query  300  AGATCTATGGTCCTTATAGTTATCAGAGGAAGAAATTAGCCGCTGCTAGATCCGTCTCAT  359
            |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  303  AGATCTATGGTCCTTACAGTTATCAGAGGAAGAAATTAGCCGCTGCTAGATCTGTCTCGT  362

Query  360  CGATGATGATGATGAATATCAATCCTCCTATAAATTCAGTTCTTGTTGAACCCAGTAGTG  419
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  363  CGATGATGATGATGAATATCAATCCTCCTATAAACTCAGTTCTTGTTGAACCCAGTAGTG  422

Query  420  ATGTTATTGCTCATTGAGTTAAACTAGTTTCTTCCAAATCTGTAATCTGATGATACAATT  479
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  423  ATGTTATTGCTCATTGAGTTAAACTAGTTTCTACCAAATCTGTAATCTGATGATACAATT  482

Query  480  GGGGTAAAATGTTCAATACTCTCATAAGACTCACTATATGAATCATTAAATTTTCAATAA  539
             |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct  483  CGGGTAAAATGTTTAATACTATCATAAGACTCACTATATGAATCATTAAATTATCAATAA  542

Query  540  ATTGTGTGTTT  550
            |||||||||||
Sbjct  543  ATTGTGTGTTT  553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5