BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495581
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54980.1 | Symbols: | Uncharacterised protein family (UPF04... 1035 0.0
> AT5G54980.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:22315699-22316601 FORWARD LENGTH=726
Length=726
Score = 1035 bits (560), Expect = 0.0
Identities = 596/614 (97%), Gaps = 0/614 (0%)
Strand=Plus/Plus
Query 9 CAACAACAACAACACAAGAGAAGAAGAGAGAAGCAGTTCTTCAAAGCAGCAGGAACCACA 68
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 112 CAACAATAACAACACAAGAGAAGAAGAGAGAAGCAGTTCTTCAAAGCAGCAACAACCACA 171
Query 69 AGCTCATATGTCTTTGAAGATCATAGATTCATGTCTAAGACTCAGTGTGGTTCCTCTCAG 128
||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 172 AGCTCCTATGTCTTTGAAGATCATAGATTCATGTCTCAGACTAAGTGTGGTTCCTCTCAG 231
Query 129 TGTTGCAACCATCTGGTTAACTGTCACTAACCATGAATCCAACCCTGACTATGGCAATTT 188
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 232 TGTTGCAACCATCTGGTTAACTGTCACTAACCACGAATCCAACCCGGACTACGGCAATTT 291
Query 189 AGACTACAACTCCATCATGGGTCTCAAGTATATGGTTGGTGTGAGTGCCATATCTGCTAT 248
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGAGTACAACTCCATCATGGGTCTCAAGTATATGGTTGGTGTGAGTGCCATATCTGCTAT 351
Query 249 TTATGCTCTGCTCTCTACTATCTCTTCATGGGTCACATGTTTAGTCTCCAAAGCTTGGCT 308
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTATGCTCTGCTCTCTACTGTTTCTTCATGGGTCACATGTTTAGTCTCCAAAGCTTGGCT 411
Query 309 CTTCTTTGTTCCTGACCAGGTTTTAGCTTATGTGATGACAACATCAGTAGCAGGAGCAAC 368
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CTTCTTTATTCCTGACCAGGTTTTAGCTTATGTGATGACAACATCAGTAGCAGGAGCAAC 471
Query 369 AGAGATAGTGTATTTACTTAACAAAGGAGACAAAATAGTGACATGGAGTGAAATGTGTTC 428
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGAGATAGTGTATCTACTTAACAAAGGAGACAAAATAGTGACATGGAGTGAAATGTGTTC 531
Query 429 TTCTTATCCACATTATTGTTCAAAACTCACAATTGCTTTGGGACTTCATGTCTTTGTTCT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTCTTATCCACATTATTGTTCAAAACTCACAATTGCTTTGGGACTTCATGTCTTTGTTCT 591
Query 489 TTTCTTTTTCTTATTTCTCTCTGTAATTTCTGCCTATAGAGCTTTTAGTCCCTTTGATCC 548
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 592 TTTCTTTTTCTTATTTCTCTCTGTCATTTCTGCTTATAGAGCTTTTAGTCCCTTTGATCC 651
Query 549 TCCTTGTGATTCTCAAACCAATACTGATGCTTAAATTAGTCAGTTTTGGAGTCAACTTTA 608
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 652 TCCTTGTGATTCTCAAACCAATAATGATGCTTAAATTAGTCAGTTTTGGATTCAACTTTA 711
Query 609 TCAAAATGTTGCAG 622
||||||||||||||
Sbjct 712 TCAAAATGTTGCAG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5