BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495582
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54990.1 | Symbols: | RING/U-box superfamily protein | chr5... 944 0.0
> AT5G54990.1 | Symbols: | RING/U-box superfamily protein | chr5:22317505-22318185
FORWARD LENGTH=681
Length=681
Score = 944 bits (511), Expect = 0.0
Identities = 627/684 (92%), Gaps = 3/684 (0%)
Strand=Plus/Plus
Query 1 ATGAGGGACAGCTACAAGCATGAACTTATCTCAACCTCAACTAACGAAACTGATCGAGTC 60
|||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAAGAACAGCTACAAGCATGAACTCATCTCAACCTCAACGAACGAAACTGATCGAGTC 60
Query 61 ATTAATCGTTGCTTTCTCCGGAAGAAGACCACACAAGAAATCATTCATCTCAGGGCTTTT 120
||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||| |
Sbjct 61 ATTAATCGTTGCTTTCTCCGGAAAAAGACCACAAAAGAAGTCATTCATCTCAAAGCTTCT 120
Query 121 CAGGTAGAAGAATCAGATTCGTACTCTTTCACCGTAACATATCAGCCAAATCTACGGATT 180
||||| |||||||||||||| || |||| |||||| || ||||||||||| ||||||
Sbjct 121 CAGGT---CGAATCAGATTCGTATTCCTTCATCGTAACTTACCAGCCAAATCTTCGGATT 177
Query 181 CGTCATGAAAATCTCGATGGACACGAACTTAAGACCACTATTGAACGTCATCGCGATCGT 240
|||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 178 CGTCATGAAAATCTCGATGGACACCAACTTAAGACCACTCTTGAACGTCATCCCGATCGT 237
Query 241 GCACTTCAACTCGAAGACAGCATCCCAAAAAAGTTTCTTGTCTCTCAAGAAACATGTCTC 300
| | || |||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 238 GTATTTAAACTCGAAGACAACATCCCAAAACAGTTTCTTGTCTCTCAAGAAACATGCCTT 297
Query 301 GAGCACGTCATGATCATCTTGTCGGCGATGTATCTCCCGCATTCGATTCAAGAACGTCTT 360
|| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 298 GAACACGTCATGATCATCTTGTCGGCGATGTATCTCCCGCAAACTATTCAAGAACGTCTT 357
Query 361 GTCCGTTACATCTCAACAGAATCAGTTAAGTTCAGCAACCGCCGCCGCGGAAGAGGAGGA 420
||||||||||||||||| ||||| || |||||||| ||||||||| |||||| |||||||
Sbjct 358 GTCCGTTACATCTCAACCGAATCCGTCAAGTTCAGAAACCGCCGCTGCGGAACAGGAGGA 417
Query 421 GGTTTGAAGGTAGAAGTTGACGTTAAAGTGGACGTGGAACAATGGGTGAGGATTGATTGT 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 GGTTTGAAGGTAGAAGTTGACGTTAAAGTCGACGTGGAACAATGGGTGAGGATTGATTGT 477
Query 481 TGTTGTAAACAAAAGGGTACTTGTCTGGTTCCGGCGATGGATTGTCCGATATGTTTGACG 540
||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||
Sbjct 478 TGTTGTAAACAAAAGGGTACTTGTCTGGTCCCGGCGTTGGATTGTCCGATATGCTTAACG 537
Query 541 GAATTATCTAGTGAGGTGAGTCGCATGGAGTTACCATGTTCCCATGTTTTTCATAGAGAC 600
|| |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 538 GAGTTATCTAGTGGGGTGAGTCGCATGAAGTTACCATGTTCCCATGTTTTTCACAGAGAC 597
Query 601 TGTGTTATGACGTGGCTGAAAATGAAGCCTTCTTGCCCTATCTGCCGAACCAAACCTCTT 660
||| | |||||||||||||||| ||| |||||||| |||||||||||||||||| ||| |
Sbjct 598 TGTATAATGACGTGGCTGAAAAAGAACCCTTCTTGTCCTATCTGCCGAACCAAAGCTCAT 657
Query 661 GGCGAAACTGTTTCTATCTATTAA 684
||| ||||||||||||||||||||
Sbjct 658 GGCAAAACTGTTTCTATCTATTAA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5