BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495585
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein 12... 1467 0.0
> AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein
120 | chr5:22324599-22326248 REVERSE LENGTH=1572
Length=1572
Score = 1467 bits (794), Expect = 0.0
Identities = 1008/1103 (91%), Gaps = 47/1103 (4%)
Strand=Plus/Plus
Query 397 attatccctaaccatcaactccatccacatccacaacattatcatcaacaacaacaacaa 456
|||||||||||||||||||||||||||||| | | || ||||| |||||||||
Sbjct 421 ATTATCCCTAACCATCAACTCCATCCACAT-C-C-AC---ATCAT------CAACAACAA 468
Query 457 caacaacataaccatcatcatcaccatcatcatcatcaacaacaacaacatcatcatcaa 516
|| |||||||| | |||||| |||||||||||||||||||||||||| | ||||||
Sbjct 469 CAGCAACATAA-C--CATCAT---CATCATCATCATCAACAACAACAACA--A-CATCAA 519
Query 517 caaatgtattttcaaccacaatcttcacaaccaaacacaccatCATCCTCCCCTCTTCCA 576
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 520 CAAATGTATTTTCAACCACAATCTTCACAACGAAACACACCATCATCTTCCCCTCTTCCA 579
Query 577 TCTCCAACACCAGTATCCGCAAACGCAAACTCCTCATCATCTTTCACTTTTCATACCACA 636
||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 580 TCTCCAACACC---A---GCAAACGCAAAGTCCTCATCATCCTTCACTTTTCATACCACG 633
Query 637 ACCGCTAATCTCCTCCATCCACTTAGCCCTCACACTCCAAACACACCACAAACTCCTTCT 696
|| ||||| |||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 634 ACTGCTAACCTCCTCCATCCACTTAGCCCTCACACTCCAAACACA-C-C--A-----TCT 684
Query 697 CAACTCTCTTCCACACCGCCTCCACCGCCACTTTCCTCTCCTTTATCTTCCCCTCGCAAC 756
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 685 CAACTCTCTTCCACACCGCCTCCACCACCACTTTCCTCTCCTTTATGTTCCCCTCGCAAC 744
Query 757 AACCAATACCCGACTCTTCCTCTCTTCGCCCTCCCAAGTTCCCAAAT---CAATAACAAT 813
|||||||||||||| ||||| ||||| |||||||| |||||||||| ||| |||||
Sbjct 745 AACCAATACCCGACCCTTCCCCTCTTTGCCCTCCCGCGTTCCCAAATCAACAACAACAAC 804
Query 814 AACGCAAATTTCACTTTCCCTAGACCTCCACCTCTCCTTCAACCGCCTTCATCGCTCTTC 873
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 805 AACGGAAATTTCACTTTCCCTAGACCTCCACCTCTCCTTCAACCGCCTTCATCACTCTTC 864
Query 874 GCTAAACGTTACAACAATGCGAATACTCCTCTCAATTGCATCAACCGCGTCTCAACCGCT 933
|| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 865 GCAAAACGTTACAACAATGCTAACACTCCTCTTAATTGCATCAACCGCGTCTCAACCGCA 924
Query 934 CCATTTTCCCCTGTTTCAAGAGACTCCTACACTTCGTTTCTAACATTGCCTTACCCTTCC 993
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 925 CCATTTTCCCCTGTTTCAAGAGACTCCTACACTTCCTTTCTTACATTGCCTTACCCTTCC 984
Query 994 CCAACCGCTCAAACAGCTACTTACCACAACACTAATAACAATTActcttcctctccttcc 1053
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 985 CCAACCGCTCAAACCGCTACTTACCACAATACTAATAACCCTTACTCTTCCTCTCCTTCC 1044
Query 1054 ttctctttaaacccttcttcttcttcttcttaccctacagcaacttcttccccaagcttt 1113
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1045 TTCTCTTTAAA-CC--CTTCTTCTTCTTCTTACCCTACATCAACTTCTTCCCCAAGCTTT 1101
Query 1114 cttcACTCCCATTACACTCCTTCTTCCACCTCCTTTCATACCAACCCGGTTTACTCCATG 1173
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1102 CTTCACTCCCATTACACTCCTTCTTCCACCTCATTTCATACCAACCCAGTTTACTCCATG 1161
Query 1174 AAACCAGAGCAGCTCCCTTCAAACCAAATTCCCCAAATAGATGCCTTCAATAATGTCAAC 1233
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1162 AAACAAGAGCAGCTCCCTTCAAACCAAATTCCCCAAATAGATGGCTTCAATAACGTCAAC 1221
Query 1234 AACTTCACAGACAATGAGAGACAAAATCATAACCTTAACAGTTCCGGTGTTCATAGAAGA 1293
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1222 AACTTCACAGACAACGAGAGACAGAATCATAACCTTAACAGTTCCGGTGCTCATAGAAGA 1281
Query 1294 AGTAGTAGCTGCAGCCTCTTAGAGGATGTCCTT-GAAGAAGCCGAAGCTTTAGCCTCTGG 1352
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1282 AGTAGTAGCTGCAGCCTCTTAGAGGATGTC-TTCGAAGAGGCCGAAGCTTTAGCCTCTGG 1340
Query 1353 AGGCAGAGGCCGGCCTCCAAAACGAAGACAACTCACAGCTTCTCCTCc-aa--acaacaa 1409
|||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1341 AGGCAGAGGCCGACCTCCAAAACGAAGACAACTCACAGCTTCTCTTCCGAACCACAACAA 1400
Query 1410 cgataacaacaacaacgacaacTTCTTCTCGGTTAGTTTCGGACATTATGACTCTTCTGA 1469
| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1401 CAACACCAACAACAACGACAACTTCTTCTCGGTTAGTTTCGGACATTATGATTCTTCTGA 1460
Query 1470 CAACTTATGTTCCGTACAAGGTA 1492
||||||||||||| | |||||||
Sbjct 1461 CAACTTATGTTCCTTGCAAGGTA 1483
Score = 549 bits (297), Expect = 3e-155
Identities = 317/327 (97%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 1 ATGATCCTGTACGGAGGAGGAGGAGCAGGGAAAGACGGTGGATCCACCAATCACTTATCA 60
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGATCATGTACGGAGGAGGAGGAGCAGGGAAGGACGGTGGATCCACCAATCACTTATCA 60
Query 61 GACGGAGGAGTGATATTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGGAGGAGTGATATTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTGCT 120
Query 121 GCGTACGTTAGAGAGAACGGTGAAGGAAACTGGAACGCCGTTCAGAAAAACACAGGTTTG 180
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 GCGTACGTTAGAGAGAACGGTGAAGGGAATTGGAACGCCGTTCAGAAAAACACAGGTTTG 180
Query 181 GCTCGTTGCGGCAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGTCCCAATCTCAAA 240
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 181 GCTCGTTGCGGCAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAA 240
Query 241 AAAGGCTCTTTCACCGGCGATGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGA 300
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGCTCTTTCACCGGTGACGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGT 300
Query 301 AACAAATGGGCTCGCATGGCTGCTCAG 327
|||||||||||||||||||||||||||
Sbjct 301 AACAAATGGGCTCGCATGGCTGCTCAG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5