BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495586
Length=3229
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55040.1 | Symbols: | DNA-binding bromodomain-containing pr... 4174 0.0
> AT5G55040.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr5:22327240-22331813 REVERSE LENGTH=3348
Length=3348
Score = 4174 bits (2260), Expect = 0.0
Identities = 2694/2895 (93%), Gaps = 63/2895 (2%)
Strand=Plus/Plus
Query 11 agagagagagagaccttagctg--tagagagagaAAGGGATTGGGTGTTGTGCACTGAGT 68
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 15 AGAGAGAGAGAGACCTTAGCTGTATAGAGAGAGAAAGGGATTGGGTGTTGTGCACTGAGT 74
Query 69 TCGAT--------------------AG-AGAAGAAGATGAGTCAGATCGCGAGACGGCGG 107
||||| || |||||||||||||||||||||||||||| |||
Sbjct 75 TCGATAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAGTCAGATCGCGAGACGACGG 134
Query 108 AGGAAAGGTCGACCGTCGAAGGCGGATCTGGCGGCGCGGCGTAGTAGTTCATCACCGGGT 167
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 135 AGGAAAGGTCGTCCGTCGAAGGCAGATCTGGCGGCGCGGCGTAGTAGTTCATCTCCGCGT 194
Query 168 GAATCGGGATATGAGCTCCGGCGAGGTCAAAGGCAGCGAAATGTGAGGTATAACTTCGAT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GAATCGGGATATGAGCTCCGGCGAGGTCAAAGGCAGCGAAATGTGAGGTATAACTTCGAT 254
Query 228 TTCGACGATTACTTCGACGAGGAGGAAGAGGATGATGTTGAAGAGGAGAGGAAGAGGCAG 287
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 255 TTCGACGATTACTTCGACGAGGAGGAAGAGGATGAGGTTGAAGAGGAGAAGAAGAGACAG 314
Query 288 AAGAAGCTGAAACAAGTTCTTAAACTGAACCAGAGCCGTGCTAGAGCTGACCCTCC-GAT 346
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 315 AAGAAGCTGAAACAAGTTCTTAAGCTGAACCAGAGCCGTGCTAGAGCTGACCCTCCTG-T 373
Query 347 TAAGAGTCGAGCGCGTGTGAGACACGCGTCTGATTATgaagaagaagaagaagaagatga 406
||||||||||||||||||||||||||||||||||||| ||||||||||| | | | ||
Sbjct 374 TAAGAGTCGAGCGCGTGTGAGACACGCGTCTGATTAT---GAAGAAGAAGACG-A-A-GA 427
Query 407 tgaggatgatgaagcagaggaggacgaggaagatgtgagtgagaagaggCAAGTGAAGAA 466
| |||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 428 --A-GATGATGAAGCAGAGGAGGAGGAGGAAGAAGTAAGTGAGAAGAGGCAAGTCAAGAA 484
Query 467 GAGGAAAATTAACCGTCACGACGACgaagatg-a-a-gaagaagagaaggattacgatgt 523
||||||| |||||||||| ||||| ||||| | | | |||||||||||||||||||||||
Sbjct 485 GAGGAAACTTAACCGTCAAGACGAAGAAGAGGAAGAGGAAGAAGAGAAGGATTACGATGT 544
Query 524 ggaaga-ga--aag-ag--gaagaa-g--aagctgattctgaggaagatgatgataagga 574
|||||| || ||| || |||||| | | ||||||||||||||||| |||||||||||
Sbjct 545 GGAAGAGGAGGAAGAAGAAGAAGAAGGTCACGCTGATTCTGAGGAAGAGGATGATAAGGA 604
Query 575 aaggaagaggaggagTGCTTCTGGGACTCAGTGTGATCATTCTTCAGAAACAACACCTAT 634
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 605 AAGGAAGAGGAGGAGCGCTTCTGGGAATCAGTGTGATCATTCTTCAGAAACAACACCTAT 664
Query 635 CCTTGACAAGAAGTCTTTGGAGTTGATTCTTGACAAACTTCAGAAGAAAGACATTTATGG 694
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 665 CCTTGACAAGAAGTCTTTGGAGTTGATTCTTGACAAACTTCAAAAGAAAGACATCTATGG 724
Query 695 TGTGTATGCAGAACCGGTTGATCCTGAAGAGCTTCCTGATTATCATGAGATGATAGAGCA 754
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 725 TGTGTATGCAGAACCTGTTGATCCTGAAGAGCTTCCTGATTATCATGATATGATAGAGCA 784
Query 755 TCCCATGGATTTTTCCACTGTGAGAAAGAAGCTTGCAAATGGATCATATTCTACATTGGA 814
|||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 785 TCCCATGGATTTTTCCACAGTGAGGAAGAAGCTTGCGAATGGATCATATTCTACGTTGGA 844
Query 815 AGAGCTTGAGAGCGATGTCTTATTGATTTGCTCAAATGCGATGCAATACAATTCCTCAGA 874
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 845 AGAGCTCGAGAGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGA 904
Query 875 CACTGTGTACTATAAACAGGCAAGGACTATTCAGGAAATGGGGAAGAGGAAGTTTGACAA 934
|||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| || ||
Sbjct 905 CACTGTCTACTATAAACAGGCAAGGACTATTCAGGAAATGGGAAAGCGGAAGTTCGAGAA 964
Query 935 GGCAAGAATTAAGATTAAACGTGCTGAGAAAGAGCTTAAAACAGATGAAAAGGTGAAACC 994
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 965 GGCAAGGCTTAAGATTAAACGAGCTGAAAAAGAGCTTAAAACAGATGAAAAGGTGAAACC 1024
Query 995 TGTCAGCTCTGTGAAGAAGCAAGTGAGACAGCCATTCAGTCGAAATGGACTAGAGCCCGT 1054
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1025 TGACAGCTCTGTGAAGAAGCAAGTGAGACAGCCATTCAGTCGAAATGGTCTAGAGGCCGT 1084
Query 1055 TGGTTCTGATTTCTCCTTTGGTGCAAACCTTGCAAGTGGAGGAGCTTCTCAAAATGAACC 1114
||||||||||||||| | ||| || |||||||| |||||||||||||||||||| || ||
Sbjct 1085 TGGTTCTGATTTCTCATCTGGGGCGAACCTTGCTAGTGGAGGAGCTTCTCAAAACGAGCC 1144
Query 1115 TGTTTCAACTCAAACT-GGCGGACATGAAAAGCACAGCTGTACGGATGTGTTTTTTGAGG 1173
||||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1145 GGTTTCAACTCAAA-TCGGCGGACATGAAAAGCACAGCTACACGGATGTGCTTTTTGAGG 1203
Query 1174 GAAATACATCCA-TAGTAGACAATCTGGAGAAAGCAGAAGACTTGTCATCCGGAAAGGGT 1232
| || |||| || ||||||||| ||||||||||||||||||||| ||||| || ||||||
Sbjct 1204 GCAACACAT-CATTAGTAGACAGTCTGGAGAAAGCAGAAGACTTATCATCTGGGAAGGGT 1262
Query 1233 CT-TGTTGGTAAGTGTGGGAGGAAGCTGTCGGTTGTTGAGGAAGACCGCCGTGCAACCTA 1291
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CTCT-TTGGTAAGTGTGGGAGGAAGCTGTCGGTTGTTGAGGAAGACCGCCGTGCAACCTA 1321
Query 1292 TGAAAATTCTGATCAGCAGGCCGATAGATCGGAGTCCATATTCACAACATTTGAGAGTGA 1351
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TGAAGATTCTGATCAGCAGGGCGATAGATCGGAGTCCATATTCACAACATTTGAGAGTGA 1381
Query 1352 AACCAAGCAGTTTGTTGCTGTAGGGCTTCATGCAGAACATGCGTATGGTAGGAGCCTTGC 1411
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AATCAAGCAGTTTGTTGCTGTAGGGCTTCATGCAGAACATGCGTATGGTAGGAGCCTTGC 1441
Query 1412 ACGTTTTGCTGCTACTCTTGGACCCGTTGCATGGAAAATAGCTTCTCAGCGAATTGAGCA 1471
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1442 ACGTTTTGCTGCAACTCTTGGACCCGTTGCATGGAAAATAGCTTCTCAGCGAATCGAGCA 1501
Query 1472 AGCACTTCCTGCAGACTTTAAGTTTGGTCGGGGATGGGTTGGAGAATACGAGCCGCTTCC 1531
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1502 AGCACTACCTGCAGACTTTAAGTTTGGCCGGGGATGGGTTGGAGAATACGAGCCGCTTCC 1561
Query 1532 TACGCCAGTACTTCTATTTGAAACCTACACACCTAAAGAACCACCTAAAAAAGCATCTGT 1591
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1562 TACACCAGTACTTCTATTTGAAACCTGCACACCTAAAGAACCACCTAAAAAAGCATCTGT 1621
Query 1592 CTTTTCAAAGCCAAAATCAAATGCTGCTGCAAAGAAGAATGAGACACTGTTTAAGACTCC 1651
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1622 GTTTTCAAAGCGGAAATCAAATGCTGCAACAAAGACGAATGAGACACTGTTTAAGACTCC 1681
Query 1652 TCTGCCCGTAAAGGAACAACAGGGTAACAGACCCGTTCGAGATGGAAACCGTGCATTCCC 1711
|||||| | ||||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 1682 TCTGCCTGCAAAGGAACAACAGGGTAGCCGACCAGTTCGAGATGGAAACCATGCATTCCC 1741
Query 1712 ATTTCCAACATCTATTGGGGCTTCGTTAGAAGGGAGTCCTTCTTTTGTTGCTACTCAAGT 1771
||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||| ||
Sbjct 1742 ATTTCCAGCATCTATTGGGGCTTTGTCAGAAGGGAGTCCCTCTTTTGTTGCTACTCAGGT 1801
Query 1772 AGGAAACCTAAAATCTATGAGCCAGCATGAATATCGGAATCCTTCTCCGCTAGATTTTGT 1831
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1802 AGGAAACCTAAAATCTATGAGCCAGCATGAATATCGAAATCCTTCTCAGCTAGATTTTGT 1861
Query 1832 CAAGTCTCAAAATAGGATTCCTCAGCAAGTAGAACTGAATTTGCCCCCACCAGCAGAACA 1891
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1862 CAAGCCTCAAAATAGGATTCCTCAGCAAGTAGAACTGAATTTACCCCCACCAGCAGAACA 1921
Query 1892 ATCCAATTCTGGTTCT-ACTTGTGTTTCGGAAAACCGTAGCTTTGGAAAATCAGATACAG 1950
| ||||||| |||||| | ||||||| |||||||| |||||||||||||||||||| |
Sbjct 1922 AACCAATTCCGGTTCTGGC-TGTGTTTTGGAAAACCAAAGCTTTGGAAAATCAGATACGG 1980
Query 1951 TGGCATCATACAGGTCATCAAGTGACATGATGAGGAACATGACTTCTAAAGATTCTGAAC 2010
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1981 TGGCATCATACAGGTCATCAAGTGACATGATGAGGAACATGAGTTCTACAGATTCTGAAC 2040
Query 2011 ATTACAAGCATCAGATGACTACTAACGGGATCTTCCCTGGTGGATTGAGTAATGGCAAAG 2070
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2041 ATTACAAGCACCAGATGACTACTAACGGGATCTTCCCTGGTGGATTGAGGAATGGCAAAG 2100
Query 2071 ACTCTCCCGGTGTGAACAGCAGAATGTTTGATCTATCTACTGATTTTGCTAATCAAATGA 2130
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 TCTCTCCCGGTGTGAACAACAGAATGTTTGATCTATCTACTGATTTTGCTAATCAAATGA 2160
Query 2131 GTCGCACAGCAACAAGTTCACAACAACCCATGAGACAACAGAGTCAAAGCCACG-GCGAA 2189
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||
Sbjct 2161 GTCGCACAGCAACAAGTTCACAGCAACCAATGAGACAACAGAGTCAAAGCCACGAG-GAA 2219
Query 2190 CAAGCACAGTTAATGAGAAACTTCAATGAGAAGGCTAGAACACAGCACAACTCCACTTAT 2249
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2220 CAAGCACAGATAATGAGAAACTTCAATGAGAGGGCTAGAACACAGCACAACTCCACTTAT 2279
Query 2250 AATCATCCTAAAGCTGATGCTACACCTAATCTCTCGTCACCACAATCCGCAAGAAGTGAA 2309
||||||||||||||||||||| |||| || | |||||||||||||||||||||||||||
Sbjct 2280 AATCATCCTAAAGCTGATGCTCCACCGAAGATTTCGTCACCACAATCCGCAAGAAGTGAA 2339
Query 2310 GATTCGA-GCAATGCTTCTGTAGCAGCTGCAAGAGCATGGATGTCGATAGGAGCTGGAGG 2368
||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2340 GATTC-AGGCAATGCTTCTGTAGCAGCAGCACGAGCATGGATGTCGATAGGAGCTGGAGG 2398
Query 2369 GAATAATAAACAAACATTTGAAAATCCTACTAATCCGAGGAGCAGCCACATTTCTGCGGA 2428
||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||
Sbjct 2399 GAATAATAAACAAACATTTGAAAATGCTAGTAATCCGAAGAGCAGCCAGATTTCTGCGGA 2458
Query 2429 GTCCTTGTATAATCCGTCAAGGGAACAACTTCACCAACAAGCTTTCAAACCAAGAGACCC 2488
||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||| |
Sbjct 2459 GTCCTTGTATAATCCATCAAGAGAACATTTTCACCAACAAGCTTTCAAACCGAGAGATGC 2518
Query 2489 CGAAGAGACACAGTTCCATCCTCAAAGGAATGGTTTCCCTTTCCAGACATTTGTGCACCA 2548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 TGAAGAGACACAGTTCCATCCTCAAAGGAATGGTTTCCCTTTCCAGACATTTGTGCACCA 2578
Query 2549 GCCTGTTCACGGGATGATGAATGTAGGATCA-CAACCATTTCAGAACAACCGACCGATTG 2607
|||||||||||||||||||| | ||||| | ||||||||||| ||||||||||| ||||
Sbjct 2579 ACCTGTTCACGGGATGATGAACGGAGGAT-ACCAACCATTTCAAAACAACCGACCAATTG 2637
Query 2608 TTTTTCCTCAGATGGCTGCTCCAACTTCTGATTTCACAAGATTCCATGTCCAGTCTCCAT 2667
|||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2638 TTTTCCCTCAGATGGCTGCCCCAACTTCTGATTTCTCAAGATTCCATGTCCAGTCTCAAT 2697
Query 2668 GGCGAGGAGGCATTACTCCACAAGTCCAGTTGAAGCAGAGACAAGAGAATCTCAATCTCC 2727
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2698 GGCGAGGAGGCATTACTCCACAAGTCCAGTTGAAGCAGAGACAAGAGAATTTCAATCTCC 2757
Query 2728 CACCAGATTTGAACATCGGAGTTCATTCGCCTGATTCTCCTGCAAAACAATCTTCTGGTG 2787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2758 CACCAGATTTGAACATCGGAGTTCATTCGCCTGATTCTCCTGCAAAACAATCTTCTGGTG 2817
Query 2788 TTCGTGTCGATTCCCAACAGCCTGATTTGGCGCTACAGCTCTaaaaaaaCAGCCATGAAG 2847
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2818 TTCGTGTCGATTCCCAACAGCCTGATTTGGCGCTACAGCTCTAAAGAAACAGCCATGAAG 2877
Query 2848 AA-AA-CCCAAGCAA 2860
|| || ||||| |||
Sbjct 2878 AACAAGCCCAA-CAA 2891
Score = 294 bits (159), Expect = 3e-78
Identities = 210/232 (91%), Gaps = 13/232 (6%)
Strand=Plus/Plus
Query 2973 TTCGAGGTTCAGGCTGG-TTAGAG---TCATCAGCCATCAGTATAGTTGGTCTAAGAGTT 3028
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||
Sbjct 3118 TTCGAGGTTCAGGCTGGTTTAGAGTCATCATCAGTCATCAGTATAGTTGGTCTAAGAGTT 3177
Query 3029 AAAATTTGGAG-ATTTTTATTGATATCGACACCCCGGTTAGCTAACTATGTTCCTAACGT 3087
||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 3178 -GAATTTGGAGAATGCTTATTGATATCGACACCGTGGTTAGCTAACGATGTTCCTAACGT 3236
Query 3088 AGATGTTTC-ATCAAACCAATCCAAGTTCTTGATTCACCTGATTCCCTGAAGTCTTTGGT 3146
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3237 AGATG-TTCAATCAAACCAAT-CAAGTTCTTGATTCACCTGATTCCCTGAAGTCTTTGGT 3294
Query 3147 CTTCCTACACTTCTCTTTTTGTTATATA-ATA-TAT--GAATTAGTATTATA 3194
|||||||||||||||| |||||| |||| ||| ||| ||||||||||||||
Sbjct 3295 CTTCCTACACTTCTCTATTTGTTCTATATATAATATACGAATTAGTATTATA 3346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160634551486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5