BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495588
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55050.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 2073 0.0
> AT5G55050.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:22337701-22340100 FORWARD LENGTH=1534
Length=1534
Score = 2073 bits (1122), Expect = 0.0
Identities = 1262/1330 (95%), Gaps = 7/1330 (1%)
Strand=Plus/Plus
Query 1 AAAAACATGCCGACGAACAACACACCGTTCCTCACTATCTTTCTCCTCTTTCTTGGTTTA 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 39 AAAAACATGCCGACGAACAACACTCCGTTCCTCACTATTTTTCTCCTCTTTCTTGGTTTA 98
Query 61 TTCCGGTTCGATTCATTTCCCGGCTTAGAAGCTGCAACCGGGAAATTAGCTTCGATTCCA 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 99 CTCCGGTTCGATTCATTTCCCGGTTTAGAAGCTGCAACCGGGAAATTAGCTTCGATTCCA 158
Query 121 GGATTATACGTGTTCGGAGATTCGTTAGTTGATGCCGGAAACAATAATCACTTACTACTT 180
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||
Sbjct 159 GGATTATACGTGTTCGGAGATTCGTTAGTTGATGCCGGCAACAATAATTACTTACCAATT 218
Query 181 TCAATATCTAAAGCTAACTATCCACATAACGGCGTTGATTTTCCGAACAAGAAACCCACC 240
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 219 TCAATATCTAAAGCTAATTATCCACATAACGGCGTCGATTTTCCGAACAAGAAACCTACC 278
Query 241 GGAAGATTCTGTAACGGCAAGAACGCCGCCGATGCTATCGCTGAGAAATTTGGTTTACCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GGAAGATTCTGTAACGGCAAGAACGCCGCCGATGCTATCGCTGAGAAATTTGGTTTACCG 338
Query 301 TTACCGCCTCCGTATCTCTCACTTAGAGGCTTACTAAAAAGGGAGAAGAGAAAATCCGCC 360
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 339 TTACCACCTCCCTATCTCTCACTTAGAGGCTTACTAAAAAGGGAGAAGAGAAAATCTGCC 398
Query 361 GCCGTGACAGGTGTGAATTTTGCTTCCGGTGGAGCTGGAATCTTCAACAGTTCCGACGAA 420
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 399 GCCGTGACTGGTGTGAATTTTGCTTCCGGTGGAGCCGGAATCTTCAACAGTTCCGACCAA 458
Query 421 AAACTTGGACAAGGTATTCCTTTATCAAAGCAAGTCAACAATTGGCTCTCTATTCATGAA 480
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 459 AAACTTGGACAAGCTATTCCTTTATCCAAGCAAGTCAACAATTGGCTCTCTATTCATGAA 518
Query 481 GAACTCATGAAACTTGAACCATCCGAAGCACAGATTCACCTATCCAAATCTCTATTCACT 540
||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 519 GAAGTCATGAAACTTGAACCATCCGCAGCACAGCTTCACCTATCCAAATCTCTATTCACT 578
Query 541 GTTGTCATAGGAAGTAACGATCTTTTCGATTACTTTGGATCATTCAAACTCCGACGACAG 600
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 579 GTTGTCATAGGAAGTAACGATCTTTTCGATTACTTTGGATCGTTCAAACTCCGACGCCAG 638
Query 601 AGCAATCCTCAACAATATACACAATTAATGGCTGATAAACTCAAAGAGCAATTAAAGAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 639 AGCAATCCTCAACAATATACACAATTAATGGCTGATAAACTCAAAGAGCAATTGAAGAGA 698
Query 661 ATTCACGATAGTGGAGCGCGTAGATTCCTTATAATCGGGGTAGCACAGATCGGTTGCACA 720
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 699 ATTCACGATAGTGGAGCGCGTAGATTCCTTATCATCGGGGTAGCACAAATTGGTTGCACA 758
Query 721 CCGGGAAAAAGAGCGAAGAACTCGACAATCCATGAATGTGACGAAGAGGCAAACATGTGG 780
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 759 CCGGGAAAAAGAGCGAAGAACTCGACACTCCATGAATGTGACGAAGGGGCAAACATGTGG 818
Query 781 TGCTCTTTGTACAACGAAGCTCTAGTAAAGATGCTGCAACAACTCAAACAAGAGTTGCAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 819 TGCTCTTTGTACAACGAAGCTCTAGTAAAGATGCTGCAACAACTCAAACAAGAATTACAA 878
Query 841 GGCTCATTGACTTACACTTACTTTGATAACTACAAGTCCTTACATGACATTATCTCCAAC 900
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 879 GGCTCAATAACTTACACTTACTTTGATAACTACAAGTCCTTACATGACATTATTTCCAAC 938
Query 901 CCTGCTCGTTACGGTTTTGCTGACGTGACATCAGCGTGTTGTGGAAATGGGGAATTAAAC 960
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 939 CCTGCCCGTTACGGTTTTGCTGACGTTACATCTGCGTGTTGTGGAAATGGGGAATTGAAC 998
Query 961 GCAGACCTTCCTTGTCTTCCTTTGGCAAAGTTATGTTCAGACAGAACCAAATATCTTTTC 1020
||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||
Sbjct 999 GCAGACCTTCCTTGTCTGCCTTTGGCGAAGTTATGTTCAGACAGAACCAAACATCTTTTT 1058
Query 1021 TGGGATCGCTACGGTCATCCCACAGAAGCTGCTGCTCGGACCATCGTCGATCTTATGTTG 1080
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGGGATCGCTATGGCCATCCCACTGAAGCTGCTGCTCGGACCATCGTCGATCTTATGTTG 1118
Query 1081 ACTGATGATTCACACTACTCATCTCCTATAACCCTTACTCAGTTGGTCTCTACATGATCA 1140
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1119 ACTGATGATACACATTACTCATCTCCTATAACTCTTACTCAGTTGGTCTCTACATGATCA 1178
Query 1141 ATAATACACACGGCTTCGtttttttGGGAAGAGTAGTACATAATCAAGTAGACAAATGGG 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1179 ATAATACACACGGCTTCGTTTTTTTGGGAAGAGTA---CATAATCAAGTAGACAAATGGG 1235
Query 1201 ATTTGGAAACTTGATTTGTAATCAAGTATACGTTACGAAATTTGTTACTTGTGAAATATA 1260
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1236 ATTTGGAAACTTGATTTGTAATCAAGTATACGTTACTAAATTTGTTACCAATGAAATATA 1295
Query 1261 TAAGTTTTTTAAAAAATAATCTCAATTTACTACTTTTTCTAAGTTTTACCGGTTTAGTTA 1320
||||||| ||| | | | | ||||||| |||||||||||||||||||||||||||
Sbjct 1296 TAAGTTTCTTATTTTTT--T-T-AGTTTACTAGTTTTTCTAAGTTTTACCGGTTTAGTTA 1351
Query 1321 AATTTAATGA 1330
||||||||||
Sbjct 1352 AATTTAATGA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5