BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495589
Length=2192
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3373 0.0
> AT5G55060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1);
Has 223 Blast hits to 218 proteins in 80 species:
Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants
- 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI
BLink). | chr5:22341952-22346577 FORWARD LENGTH=2293
Length=2293
Score = 3373 bits (1826), Expect = 0.0
Identities = 2049/2156 (95%), Gaps = 17/2156 (1%)
Strand=Plus/Plus
Query 46 ACAGGTGCGCATGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 105
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ACAGGTGCGCACGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 171
Query 106 TTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 231
Query 166 GGAGGAGAAGCAATCGACGAGGGATGTGAATGACTCTCAGGAGGAGAATGAAGTGAAGCA 225
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 232 GGAGGAGAAGCAATCGACGAGGAATGTGAATGACTCTCAGGAGGAGAATGAAGTGAAG-A 290
Query 226 -TCAGGGATGGAGAACTGCACATATTAGGAAGAAGCAAGATTGGCAAAATAAACTGAAAT 284
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 291 CTCAGGGGTGGAGAACTGCACATATTAGGAAAAAGCAAGAGTGGCAAAATAAACTGAAAA 350
Query 285 ACTTGAGAATTGGTAGGAAAGAAGTTGAAGATCAAGACAAGGTTGAGGATTCAGCCATGG 344
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ACTTGAGAATTGGGAGGAAAGAAGTTGAAGATCAAGACAAGGTTGAGGATTCAGCCATGG 410
Query 345 CTGCCCCTTTTTATGACGAGAATTTATT-TATTCTTAAAGCAAAGCAAGAACAAGAAGCC 403
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 411 CTGCCCCTTTCTATGACGAGAATTT-TTATATTCTTAAAGCAAAGCAAGAACAAGAAGCC 469
Query 404 AAGGCATCTGATGTCGGCTGCTTGGTAGAATCTCTAAATGCCGTTGATGCAAATAGCATT 463
||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct 470 AAGGCATCTGATGTCGGCTGCATGGTAGAATCTCTAAATGCGGTTGATGCGAACAGCATT 529
Query 464 CCTCCGGCATCCATTGTAAAGCAGCTGGCTGCAGCAATCGAAGCGGGAAAAAGGGCTAAG 523
|||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||
Sbjct 530 CCTCTGGCATCCGTTGTGAAGCAGCTGGCTGTAGCAATCGAAGCAGGAAAAAGGGCTAAG 589
Query 524 ACTGTGAAAGACTTTGTTGCATCGTCAGGAAGTTCATCACCAGTGAGGGAGAGGGGAGGC 583
| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 590 AATGTGAAAGACTTTGTTGCATCATCTGGAAGTTCATCACCAGTGAGGGAGAGGGGAGGC 649
Query 584 TTGAGCCTCTCTGCAGTGAAATCGCTGGTTCTTGGTGAAAAAGAGGATAAGCTTGGTTTT 643
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 650 TTGAGCCTCTCTGCGGTGAAATCACTGGTTCTTGGTGAAAAAGAGGATAAGCTTGGTTTT 709
Query 644 GATTCAGGAGATGAGGAAAAACTTGTTTCTCTAATAAATGCCTTGTTTAATATTGATAGT 703
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 710 GATTCAGGAGATGAGGATAAACTTGTGTCTCTAATAAATGCCTTGTTTAATGTTGATAGT 769
Query 704 GGCTTCCTTAGCAGAAAGATTGTCTCTGATTTGGAGTCTCCTACCAACAGACCATCTTTC 763
||||| || |||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 770 GGCTTTCTCAGCAGAAAGATTGTCTCTGATTTGGAGTCTCCGACCAACAGATCATCTTTT 829
Query 764 GCAAAAGATCTTCATGCTGCTCCCCCTAGTAGCTTTGTTGTTAAGCTAGCTGAAGTAATT 823
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 830 GCAAAAGATCTTCATGCTGCTCCCCCTAGTAGTTTTGTTGTTAAGCTAGCTGAAGTAATT 889
Query 824 GGAAGTTTTACAACACCCAGGAGAATGGCTTTGTTCTGGTGCAAGGTGGTTGATGAATGG 883
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 890 GGAAGTTTTACAACACCCAGGAGAATGGCTTTGTTCTGGTGCAGGGTGGTTGAAGAATTG 949
Query 884 A-TAGTTCTCTCTGTTG-TTGAGGAGATTTTGGA-ACCATGGATACCTCTGGACAATAAT 940
| || | | | || | || |||| | |||||||||||||||||||||||||
Sbjct 950 AGGAGAT-T-T-TG--GAACGAAGAGA-AACACATACCATGGATACCTCTGGACAATAAT 1003
Query 941 CCAGATTTGAAAAGTTGCCTACTGCACCAATGGTTACAGGTTATAAACTGTTGTCTTGCC 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CCAGATTTGAAAAGTTGCCTACTGCACCAATGGTTACAGGTTATAAACTGTTGTCTTGCC 1063
Query 1001 AGGAAAGCACGCAGCGTAGCTGCTTCCGAAGCATTAGATGCGGTAATGAGGCAAGCCAGT 1060
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AGGAAAGCCCGCAACGTAGCTGCTTCCGAAGCATTAGATGCGGTAATGAGGCAAGCCAGT 1123
Query 1061 TCTGCCAATGAAGAGTCAGACGTTTCAGAAGCAACGGGTTCTCTTTTGTATGCTAAAAGT 1120
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1124 TCTGCCAATGAAAAGTCAGACGTTTCAGAATCAATGGGTTCTCTTTTGTATGCTAAAAGT 1183
Query 1121 AATTCCGGGGAACTTATACTCCGCTTGGGCGTTTATCACCAAGTTGAGAACTTATCAATG 1180
|| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 1184 AACTCCGGGGAACTTATACTCCGTTTGGGCGTTTATAACCAAGTTGAGAACTTAACAATG 1243
Query 1181 TTGGAAACTGGTGAACCTGTGTATGCCCCAATAACTCAGGAAGGTCCGCTGTTGACGGAA 1240
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1244 TTGGAAACTGGTGAACCTGTGTATTCCCCAATAACACAGGAAGGTCCGCTGTTGACGGAA 1303
Query 1241 GATCTTATTAGAGAAACAGAGGAATTAGTACTTCGGACAGGAAGCATGGGGGCTGGATGT 1300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1304 GATCTTATTAGAGAAACAGAGGAATTAGTACTTCGGACAGGGAGCATGGGGGCTGGATGT 1363
Query 1301 TCTCAACTCTTGTCTGACATGCAGGCTTTCAAGGCAGCAAATCCTGGCTGTATTTTGGAA 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TCTCAACTCTTGTCTGACATGCAGGCTTTCAAGGCAGCAAATCCTGGCTGTATTTTGGAA 1423
Query 1361 GATTTTGTGAGATGGCATTCTCCACCAGACTGGACTGAAAATGGTAACTTGTCTGGAGAT 1420
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 1424 GATTTTGTGAGATGGCACTCGCCACCAGACTGGACTGAAAATGGTAACATGTCTGGAGAT 1483
Query 1421 GACTCTTCACCCGTTCGAGGTCAATTAAGTACCCGGATGCAGAAAGAAGGTAATTTATGG 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GACTCTTCACCCGTTCGAGGTCAATTAAGTACCCGGATGCAGAAAGAAGGTAATTTATGG 1543
Query 1481 CGCGAGCTGTGGGAAACAGCTAAACCACTCCCTGCTGTTAAACAAGCACCTCTCTTCGAT 1540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1544 CGTGAGCTGTGGGAAACAGCTAAACCACTCCCTGCTGTTAAACAAGCACCTCTCTTTGAT 1603
Query 1541 GAAGATTTAGCTGTAGAAGGAATCTTGAATTATTTGGAAGACATTCCAGCTGCTGAACTT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GAAGATTTAGCTGTAGAAGGAATCTTGAATTATTTGGAAGACATTCCAGCTGCTGAACTT 1663
Query 1601 TTCGAGCAGCTGTTTACTTCGCTACTTTCCCTGGGGTTTGTGATGGTGGAGCCAGTTTTA 1660
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1664 TTTGAGCAGCTGTTTACTTCGCTAGTTTCCCTGGGGTTTGTGATGGTGGAGCCAGTTTTA 1723
Query 1661 GCCACAAACGATGACTTGTCAAAGCTTTTCTTCGAATGCAAGGATTATGTAGTCGCTATT 1720
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1724 GCTACAAACGATGACTTGTCAAAGCTTTTCTTTGAATGCAAGGATTATGTAGTCGCTATT 1783
Query 1721 TGTCAGGGGGGTGCATGGACCGATAAGCTTGATGATCTCTGCCAGGTATACGAGACCGTG 1780
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1784 TGTCAGGGGGGCGCATGGACCGATAAGCTTGATGATCTATGCCAGGTATACGAGACCGTG 1843
Query 1781 GAAACAATGTTATTATGTCCAGAAGAAGTTTTGAGATCAATGAAACAAACAGAGGACTCG 1840
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1844 GAAACAATGTTATTACGTCCAGAAGAAGTTTTGAGATCAATGAAACAAACAGAGGAGTCG 1903
Query 1841 CCATCAAGTGGGAGCGAAACGAAACGCCGGTTTAAGCGGCTCGGTTTCATCTTTCGAGGT 1900
||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1904 CCATCAAGTGGCAGCGAAACGAAACGGCGGTTTAAGCGGCTAGGTTTCATCTTTCGTGGT 1963
Query 1901 AGTAAAGAACGAAAGCAGACAAGAGTTCCATCAGAAACTGAACAGAAAAGCACCGAACCT 1960
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964 AGTAAAGAAAGAAAGCAGACAAGAGTTCCATCAGAAACTGAACAGAAAAGCACCGAACCT 2023
Query 1961 AGCCCGCGCCAATCGTTCTCTAGTCTTTTTGATGGCAAGTCGTCTCTGTTTGCAAAGAGA 2020
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2024 AGCCCACGCCAATCATTCTCTAGTCTTTTTGATGGCAAGTCGTCTCTGTTTTCAAAGAGA 2083
Query 2021 CCTCCTAGACCGGAAAATGTGACGCTTGTCTGatttcttcttatttattttatttgtttc 2080
||||||||||| ||||||||||||||||||||| | | | |||||||||| |||||||||
Sbjct 2084 CCTCCTAGACCTGAAAATGTGACGCTTGTCTGAATCCATATTATTTATTTGATTTGTTTC 2143
Query 2081 atctgcttttgagtcatttctcagcttttt-t-ttctt-t-ctgagtttttAGGTTGTTA 2136
|||||||||| ||||||||||||| ||||| | ||||| | ||| | |||||||||||||
Sbjct 2144 ATCTGCTTTTAAGTCATTTCTCAGTTTTTTGTATTCTTCTTCTGGGGTTTTAGGTTGTTA 2203
Query 2137 AGCTGATCAATTGGTTGGTAACTGTAAAGTTATCTCATTTAAAACATTTCTGAAGG 2192
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2204 AGTTGATCAATTGGTTGGTAACTGTAAAGTTATCTTATTTAAAACATTTCTGAAGG 2259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108734380470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5