BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495589 Length=2192 Score E Sequences producing significant alignments: (Bits) Value AT5G55060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3373 0.0 > AT5G55060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr5:22341952-22346577 FORWARD LENGTH=2293 Length=2293 Score = 3373 bits (1826), Expect = 0.0 Identities = 2049/2156 (95%), Gaps = 17/2156 (1%) Strand=Plus/Plus Query 46 ACAGGTGCGCATGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 105 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 ACAGGTGCGCACGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 171 Query 106 TTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 165 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 231 Query 166 GGAGGAGAAGCAATCGACGAGGGATGTGAATGACTCTCAGGAGGAGAATGAAGTGAAGCA 225 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 232 GGAGGAGAAGCAATCGACGAGGAATGTGAATGACTCTCAGGAGGAGAATGAAGTGAAG-A 290 Query 226 -TCAGGGATGGAGAACTGCACATATTAGGAAGAAGCAAGATTGGCAAAATAAACTGAAAT 284 |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 291 CTCAGGGGTGGAGAACTGCACATATTAGGAAAAAGCAAGAGTGGCAAAATAAACTGAAAA 350 Query 285 ACTTGAGAATTGGTAGGAAAGAAGTTGAAGATCAAGACAAGGTTGAGGATTCAGCCATGG 344 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 ACTTGAGAATTGGGAGGAAAGAAGTTGAAGATCAAGACAAGGTTGAGGATTCAGCCATGG 410 Query 345 CTGCCCCTTTTTATGACGAGAATTTATT-TATTCTTAAAGCAAAGCAAGAACAAGAAGCC 403 |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 411 CTGCCCCTTTCTATGACGAGAATTT-TTATATTCTTAAAGCAAAGCAAGAACAAGAAGCC 469 Query 404 AAGGCATCTGATGTCGGCTGCTTGGTAGAATCTCTAAATGCCGTTGATGCAAATAGCATT 463 ||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||| Sbjct 470 AAGGCATCTGATGTCGGCTGCATGGTAGAATCTCTAAATGCGGTTGATGCGAACAGCATT 529 Query 464 CCTCCGGCATCCATTGTAAAGCAGCTGGCTGCAGCAATCGAAGCGGGAAAAAGGGCTAAG 523 |||| ||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||| Sbjct 530 CCTCTGGCATCCGTTGTGAAGCAGCTGGCTGTAGCAATCGAAGCAGGAAAAAGGGCTAAG 589 Query 524 ACTGTGAAAGACTTTGTTGCATCGTCAGGAAGTTCATCACCAGTGAGGGAGAGGGGAGGC 583 | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 590 AATGTGAAAGACTTTGTTGCATCATCTGGAAGTTCATCACCAGTGAGGGAGAGGGGAGGC 649 Query 584 TTGAGCCTCTCTGCAGTGAAATCGCTGGTTCTTGGTGAAAAAGAGGATAAGCTTGGTTTT 643 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 650 TTGAGCCTCTCTGCGGTGAAATCACTGGTTCTTGGTGAAAAAGAGGATAAGCTTGGTTTT 709 Query 644 GATTCAGGAGATGAGGAAAAACTTGTTTCTCTAATAAATGCCTTGTTTAATATTGATAGT 703 ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct 710 GATTCAGGAGATGAGGATAAACTTGTGTCTCTAATAAATGCCTTGTTTAATGTTGATAGT 769 Query 704 GGCTTCCTTAGCAGAAAGATTGTCTCTGATTTGGAGTCTCCTACCAACAGACCATCTTTC 763 ||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 770 GGCTTTCTCAGCAGAAAGATTGTCTCTGATTTGGAGTCTCCGACCAACAGATCATCTTTT 829 Query 764 GCAAAAGATCTTCATGCTGCTCCCCCTAGTAGCTTTGTTGTTAAGCTAGCTGAAGTAATT 823 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 830 GCAAAAGATCTTCATGCTGCTCCCCCTAGTAGTTTTGTTGTTAAGCTAGCTGAAGTAATT 889 Query 824 GGAAGTTTTACAACACCCAGGAGAATGGCTTTGTTCTGGTGCAAGGTGGTTGATGAATGG 883 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 890 GGAAGTTTTACAACACCCAGGAGAATGGCTTTGTTCTGGTGCAGGGTGGTTGAAGAATTG 949 Query 884 A-TAGTTCTCTCTGTTG-TTGAGGAGATTTTGGA-ACCATGGATACCTCTGGACAATAAT 940 | || | | | || | || |||| | ||||||||||||||||||||||||| Sbjct 950 AGGAGAT-T-T-TG--GAACGAAGAGA-AACACATACCATGGATACCTCTGGACAATAAT 1003 Query 941 CCAGATTTGAAAAGTTGCCTACTGCACCAATGGTTACAGGTTATAAACTGTTGTCTTGCC 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1004 CCAGATTTGAAAAGTTGCCTACTGCACCAATGGTTACAGGTTATAAACTGTTGTCTTGCC 1063 Query 1001 AGGAAAGCACGCAGCGTAGCTGCTTCCGAAGCATTAGATGCGGTAATGAGGCAAGCCAGT 1060 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1064 AGGAAAGCCCGCAACGTAGCTGCTTCCGAAGCATTAGATGCGGTAATGAGGCAAGCCAGT 1123 Query 1061 TCTGCCAATGAAGAGTCAGACGTTTCAGAAGCAACGGGTTCTCTTTTGTATGCTAAAAGT 1120 |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1124 TCTGCCAATGAAAAGTCAGACGTTTCAGAATCAATGGGTTCTCTTTTGTATGCTAAAAGT 1183 Query 1121 AATTCCGGGGAACTTATACTCCGCTTGGGCGTTTATCACCAAGTTGAGAACTTATCAATG 1180 || |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| Sbjct 1184 AACTCCGGGGAACTTATACTCCGTTTGGGCGTTTATAACCAAGTTGAGAACTTAACAATG 1243 Query 1181 TTGGAAACTGGTGAACCTGTGTATGCCCCAATAACTCAGGAAGGTCCGCTGTTGACGGAA 1240 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1244 TTGGAAACTGGTGAACCTGTGTATTCCCCAATAACACAGGAAGGTCCGCTGTTGACGGAA 1303 Query 1241 GATCTTATTAGAGAAACAGAGGAATTAGTACTTCGGACAGGAAGCATGGGGGCTGGATGT 1300 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1304 GATCTTATTAGAGAAACAGAGGAATTAGTACTTCGGACAGGGAGCATGGGGGCTGGATGT 1363 Query 1301 TCTCAACTCTTGTCTGACATGCAGGCTTTCAAGGCAGCAAATCCTGGCTGTATTTTGGAA 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1364 TCTCAACTCTTGTCTGACATGCAGGCTTTCAAGGCAGCAAATCCTGGCTGTATTTTGGAA 1423 Query 1361 GATTTTGTGAGATGGCATTCTCCACCAGACTGGACTGAAAATGGTAACTTGTCTGGAGAT 1420 ||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| Sbjct 1424 GATTTTGTGAGATGGCACTCGCCACCAGACTGGACTGAAAATGGTAACATGTCTGGAGAT 1483 Query 1421 GACTCTTCACCCGTTCGAGGTCAATTAAGTACCCGGATGCAGAAAGAAGGTAATTTATGG 1480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1484 GACTCTTCACCCGTTCGAGGTCAATTAAGTACCCGGATGCAGAAAGAAGGTAATTTATGG 1543 Query 1481 CGCGAGCTGTGGGAAACAGCTAAACCACTCCCTGCTGTTAAACAAGCACCTCTCTTCGAT 1540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1544 CGTGAGCTGTGGGAAACAGCTAAACCACTCCCTGCTGTTAAACAAGCACCTCTCTTTGAT 1603 Query 1541 GAAGATTTAGCTGTAGAAGGAATCTTGAATTATTTGGAAGACATTCCAGCTGCTGAACTT 1600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1604 GAAGATTTAGCTGTAGAAGGAATCTTGAATTATTTGGAAGACATTCCAGCTGCTGAACTT 1663 Query 1601 TTCGAGCAGCTGTTTACTTCGCTACTTTCCCTGGGGTTTGTGATGGTGGAGCCAGTTTTA 1660 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1664 TTTGAGCAGCTGTTTACTTCGCTAGTTTCCCTGGGGTTTGTGATGGTGGAGCCAGTTTTA 1723 Query 1661 GCCACAAACGATGACTTGTCAAAGCTTTTCTTCGAATGCAAGGATTATGTAGTCGCTATT 1720 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1724 GCTACAAACGATGACTTGTCAAAGCTTTTCTTTGAATGCAAGGATTATGTAGTCGCTATT 1783 Query 1721 TGTCAGGGGGGTGCATGGACCGATAAGCTTGATGATCTCTGCCAGGTATACGAGACCGTG 1780 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1784 TGTCAGGGGGGCGCATGGACCGATAAGCTTGATGATCTATGCCAGGTATACGAGACCGTG 1843 Query 1781 GAAACAATGTTATTATGTCCAGAAGAAGTTTTGAGATCAATGAAACAAACAGAGGACTCG 1840 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1844 GAAACAATGTTATTACGTCCAGAAGAAGTTTTGAGATCAATGAAACAAACAGAGGAGTCG 1903 Query 1841 CCATCAAGTGGGAGCGAAACGAAACGCCGGTTTAAGCGGCTCGGTTTCATCTTTCGAGGT 1900 ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 1904 CCATCAAGTGGCAGCGAAACGAAACGGCGGTTTAAGCGGCTAGGTTTCATCTTTCGTGGT 1963 Query 1901 AGTAAAGAACGAAAGCAGACAAGAGTTCCATCAGAAACTGAACAGAAAAGCACCGAACCT 1960 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1964 AGTAAAGAAAGAAAGCAGACAAGAGTTCCATCAGAAACTGAACAGAAAAGCACCGAACCT 2023 Query 1961 AGCCCGCGCCAATCGTTCTCTAGTCTTTTTGATGGCAAGTCGTCTCTGTTTGCAAAGAGA 2020 ||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2024 AGCCCACGCCAATCATTCTCTAGTCTTTTTGATGGCAAGTCGTCTCTGTTTTCAAAGAGA 2083 Query 2021 CCTCCTAGACCGGAAAATGTGACGCTTGTCTGatttcttcttatttattttatttgtttc 2080 ||||||||||| ||||||||||||||||||||| | | | |||||||||| ||||||||| Sbjct 2084 CCTCCTAGACCTGAAAATGTGACGCTTGTCTGAATCCATATTATTTATTTGATTTGTTTC 2143 Query 2081 atctgcttttgagtcatttctcagcttttt-t-ttctt-t-ctgagtttttAGGTTGTTA 2136 |||||||||| ||||||||||||| ||||| | ||||| | ||| | ||||||||||||| Sbjct 2144 ATCTGCTTTTAAGTCATTTCTCAGTTTTTTGTATTCTTCTTCTGGGGTTTTAGGTTGTTA 2203 Query 2137 AGCTGATCAATTGGTTGGTAACTGTAAAGTTATCTCATTTAAAACATTTCTGAAGG 2192 || |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2204 AGTTGATCAATTGGTTGGTAACTGTAAAGTTATCTTATTTAAAACATTTCTGAAGG 2259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108734380470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5