BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495590
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55070.1 | Symbols: | Dihydrolipoamide succinyltransferase ... 2686 0.0
AT4G26910.1 | Symbols: | Dihydrolipoamide succinyltransferase ... 1295 0.0
AT2G13580.1 | Symbols: | pseudogene, similar to OSJNBa0072K14.... 147 5e-34
> AT5G55070.1 | Symbols: | Dihydrolipoamide succinyltransferase
| chr5:22347211-22350817 FORWARD LENGTH=1998
Length=1998
Score = 2686 bits (1454), Expect = 0.0
Identities = 1682/1787 (94%), Gaps = 36/1787 (2%)
Strand=Plus/Plus
Query 1 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTC-TTCGTGACTTTGCTC 59
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTCTTTCGTGAC-TTGCTC 60
Query 60 AAAGCTGAGAAAGGTCATATGCTTTTCTCCAG----------T-TC---CTCTCTCCTCC 105
||||| |||||||||||||||||||||||||| | || |||||||||||
Sbjct 61 AAAGCAGAGAAAGGTCATATGCTTTTCTCCAGTTCCTCTCTCTGTCTATCTCTCTCCTCC 120
Query 106 TTCAATAATTTCTGCAAACCCTAAATTTCTCATTCGGCGCTCAAGTTTCTTCT-CTCCAC 164
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| | || |
Sbjct 121 TTCAATAATTTCTGCAAACCCTAACTTTCTCATTCGGCGCTCAAGTTTC-TCTCCACC-C 178
Query 165 C-TCTAGATTTGGTGCGATGATGTTGCGTGCTCTTATTAGGAGAGCTTCCACGAGAGGCT 223
| || ||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 179 CTTCGAGATTTGGTGCGATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCT 238
Query 224 CTTCTTGTGCTTCGGGATTGGGAAAATC-TCTGCAATCTTCTCGTGTTGTAGCGTCTGCC 282
|||||| ||||||||||||||||||||| | ||||||| |||||||||| || ||||||
Sbjct 239 CTTCTTCTGCTTCGGGATTGGGAAAATCAT-TGCAATCCTCTCGTGTTGCAGTGTCTGCT 297
Query 283 CAATTTCATTCTGTTTCAGCTACTGAGACGTTGGTACCTCGTGGAAACCATGCTCGTAGC 342
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||
Sbjct 298 CAATTTCATTCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357
Query 343 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTGTTTTCAACGGTTAC 402
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 358 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTATTATCAACGGTTAC 417
Query 403 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 477
Query 463 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTG 522
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 478 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGCCTTTCTG 537
Query 523 AAGAAACCTGGTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 582
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 597
Query 583 GTTACAATAGATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAA 642
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 GTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGTCAAGGAA 657
Query 643 GGAGACACTGTTGAACCAGGAAACAAGGTTGCTAGAATTTCTACATCTGCGGATGCTGTG 702
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACATCTGCGGATGCTGTG 717
Query 703 TCTCATGTTGCACCCTCAGAAAAGACACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 762
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 TCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 777
Query 763 GCTGAGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 822
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GCTGAGAAGCCCAAAGTTGAAAGTACCAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 837
Query 823 CAACCGCCACCGCC--C-AAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGG 879
| ||| |||||||| | |||||||||||||||||||||||||| || ||||||||||||
Sbjct 838 CCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAGCTTCCACCTAAGGATAGG 897
Query 880 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCT 939
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCT 957
Query 940 CAAAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 999
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 1017
Query 1000 CTCCGATCTCAGTACAAGGATGCtttttttGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1059
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 CTCCGATCTCAGTACAAGGATGCTTTTCTTGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1077
Query 1060 TCTGGTTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTT 1119
|||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1078 TCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCAACCTGTAGTAAATGCAGTT 1137
Query 1120 ATCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1179
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCGATGGAGATGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1197
Query 1180 TCTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATA 1239
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 TCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAAAATGAACTTTGCTGACATA 1257
Query 1240 GAGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAG 1299
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1258 GAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGGAACCATATCAATCGATGAG 1317
Query 1300 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1377
Query 1360 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTGCAACGTCCA 1419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCAATTGTGCAACGTCCA 1437
Query 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1438 ATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGTATGTCGCGCTGACTTACGAT 1497
Query 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539
|||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1498 CATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGCGCCGTATTAAGGATGTTGTG 1557
Query 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCTAAGACAGGAGAGATCATA 1599
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1558 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCCAAGACAGAAGAGATCATA 1617
Query 1600 AGTTTCTGTCTTTTTACCAGTTTCCGTTCAGGTTCAGGTAAACCACTACAGATATTGCAA 1659
||||||||||||||||||||||||| ||||||| | |||||| ||| |||| |||||
Sbjct 1618 AGTTTCTGTCTTTTTACCAGTTTCCTTTCAGGT--A---AAACCATTACGGATACTGCAA 1672
Query 1660 TCTGCAAATGATACTTCTGAGaaaaa-aaCGAAACttttttt--GGAGTTC-CTTAATAG 1715
|||||||||||| ||| ||| ||||| ||||||||||||||| |||||| ||||||||
Sbjct 1673 TCTGCAAATGATGCTT-TGA-AAAAAGAACGAAACTTTTTTTTTGGAGTTTTCTTAATAG 1730
Query 1716 TTCCAAGAGTTTTTACCGGGCGAGGAAAGCATCGGTGTATACAGTTT 1762
|| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1731 TTTTAAGAGTTTTTGCCGGGCGAGGAAAGCATCGGTGTATTGAGTTT 1777
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1754 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1787
||||||||||||||||||||||||||||||||||
Sbjct 1798 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1831
> AT4G26910.1 | Symbols: | Dihydrolipoamide succinyltransferase
| chr4:13519811-13523222 REVERSE LENGTH=1815
Length=1815
Score = 1295 bits (701), Expect = 0.0
Identities = 1024/1180 (87%), Gaps = 22/1180 (2%)
Strand=Plus/Plus
Query 413 CCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTGGAAGCTGTTG 472
|||||||||||||||||||||| |||||| |||| | ||| ||| ||||||||| ||||
Sbjct 334 CCCTGCAAAGATGGGTCAGGCCTTTTTCAGCTGAAACTGGAGATACCGTGGAAGCAGTTG 393
Query 473 TGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTGAAGAAACCTG 532
|||| || ||||| |||||||| || ||||| ||| | ||||||||||||||||||||||
Sbjct 394 TGCCTCATATGGGGGAATCAATTACTGATGGCACCTTGGCCACCTTTCTGAAGAAACCTG 453
Query 533 GTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAGGTTACAATAG 592
|||| ||||| | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 454 GTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAACTGATAAGGTGACAATAG 513
Query 593 ATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAAGGAGACACTG 652
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 514 ATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAGTTTCTAGTCAACGAAGGAGATACTG 573
Query 653 TTGAACCAGGAAACAAGGTTGCTAGAATTTCTACA-TCTGCGGATGCTGTGTCTCATGTT 711
| |||||||||| |||||| |||| || || | | |||| |||| ||| ||||| |||
Sbjct 574 TAGAACCAGGAACCAAGGTCGCTATTATATC-AAAGTCTGAGGATACTGCATCTCAGGTT 632
Query 712 GCACCCTCAGAAAAGACACCAGAGA-AACCTGCTCCCAAGCCTTCTCCTCCTGC------ 764
| ||||| | |||| |||||||| || ||| | |||| ||||||||||||||
Sbjct 633 ACCCCCTCTCAGAAGATACCAGAGACAA-CTGATACCAAACCTTCTCCTCCTGCTGAAGA 691
Query 765 T--G-AGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACC 821
| | ||||||||| ||| |||||| || || |||||||||||||| ||||||| ||
Sbjct 692 TAAGCAGAAGCCCAGAGTGGAAAGTGCTCCTGTAGCAGAGAAACCCAAAGCACCAT--CC 749
Query 822 GCAACCGCCACCGCCCAAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGGGA 881
| ||| || || ||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 750 TC-ACCACCTCCACCCAAACAGTCTGCTAAAGAACCGCAGCTTCCTCCTAAGGAAAGAGA 808
Query 882 AAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCTCA 941
|||||||||||| |||||||||||||| ||||| || ||||| || |||||||||||||
Sbjct 809 AAGACGGGTTCCGATGACAAGACTTCGGAAACGAGTTGCAACAAGATTGAAAGACTCTCA 868
Query 942 AAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAGCT 1001
||| ||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 869 AAATACTTTCGCGTTGCTGACAACTTTCAATGAAGTTGATATGACAAATTTGATGAAGCT 928
Query 1002 CCGATCTCAGTACAAGGATGCtttttttGAAAAGCACGGAGTGAAGTTGGGGCTTATGTC 1061
|||||| || ||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 929 CCGATCCCAATACAAGGATGCATTTTATGAAAAGCATGGAGTGAAGTTGGGGCTTATGTC 988
Query 1062 TGG-TTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTTA 1120
||| ||| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 989 TGGATTT-ATTAAAGCTGCTGTTAGCGCCCTTCAGCATCAACCAGTTGTAAATGCAGTTA 1047
Query 1121 TCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACCT 1180
| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1048 TTGACGGGGATGATATCATATACAGAGACTATGTGGATATCAGTATCGCTGTTGGTACCT 1107
Query 1181 CTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATAG 1240
||||||| ||||| || ||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1108 CTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGATAAAATGAACTTTGCCGAGATAG 1167
Query 1241 AGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAGA 1300
|||| || |||||| ||||| |||||||| ||||||||||||||||| || || ||||
Sbjct 1168 AGAAGACGATAAACTCACTTGCCAAGAAGGCAAATGAAGGAACCATATCCATAGATGAGA 1227
Query 1301 TGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACTC 1360
|||| || ||||||||||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 1228 TGGCTGGCGGATCATTCACCGTTTCAAATGGCGGTGTCTATGGAAGTCTCATAAGCACTC 1287
Query 1361 CTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTG-CAACGTCCA 1419
| ||||| || |||||||||||||| || || || ||||| ||||||||| || ||||||
Sbjct 1288 CGATCATTAATCCTCCTCAGTCTGCCATACTCGGCATGCACTCGATTGTGTCA-CGTCCA 1346
Query 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479
||||| || |||||||||||||| || || |||||||||||||||||||| || || |||
Sbjct 1347 ATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGATGTATGTCGCACTTACGTATGAT 1406
Query 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539
|| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1407 CACAGGCTGATTGATGGTAGAGAGGCTGTGTACTTCCTGCGCCGTGTCAAGGATGTTGTG 1466
Query 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGAT 1579
|| ||||| || ||||||||||| ||||||| | ||||||
Sbjct 1467 GAGGATCCACAAAGGCTTCTTCTTGACATAT-A-AAAGAT 1504
> AT2G13580.1 | Symbols: | pseudogene, similar to OSJNBa0072K14.8,
blastp match of 34% identity and 3.7e-06 P-value to GP|21740743|emb|CAD40552.1||AL606621
OSJNBa0072K14.8 {Oryza sativa
(japonica cultivar-group)} | chr2:5658456-5659763 FORWARD
LENGTH=1308
Length=1308
Score = 147 bits (79), Expect = 5e-34
Identities = 87/91 (96%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1089 CCTCCAGCACCAACCAGTAGTAAATGCAGTTATCGACGGGGACGATATCATTTACAGAGA 1148
||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||
Sbjct 795 CCTCCAGCACCAACCTGTAGTAAATGCAGTTATCGATGGAGATGATATCATTTACAGAGA 854
Query 1149 CTACGTGGATATCAGTATCGCTGTTGGTACC 1179
|||||||||||||||||||||||||||||||
Sbjct 855 CTACGTGGATATCAGTATCGCTGTTGGTACC 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88403159745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5