BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495591
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55090.1 | Symbols: MAPKKK15 | mitogen-activated protein kin... 1969 0.0
AT4G26890.1 | Symbols: MAPKKK16 | mitogen-activated protein kin... 568 7e-161
> AT5G55090.1 | Symbols: MAPKKK15 | mitogen-activated protein kinase
kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=1347
Length=1347
Score = 1969 bits (1066), Expect = 0.0
Identities = 1249/1337 (93%), Gaps = 14/1337 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAACTAAACTGGATAAGAGGACCAATCATAGGCCGAGGCTCAACAGCTACTGTC 60
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGGAACAAAACTGGATAAGAGGACCAATCATAGGTCGAGGCTCAACAGCTACTGTC 60
Query 61 TCACTTGCAATCACAAACTCCGGTGACTTCTTCGCCGTCAAATCCACCGAGTTTTCTTCA 120
||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCACTTGGAATCACAAATTCCGGTGACTTCTTCGCCGTCAAATCCGCCGAGTTTTCTTCA 120
Query 121 TCGGCGTTTTTGCAGAGAGAACAATCGATTTTATCGAATTTGAGCTCTCCTTATATAGTC 180
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 121 TCGGCGTTTTTGCAGAGAGAACAATCGATTTTGTCGAAGTTGAGCTCTCCTTACATAGTC 180
Query 181 AAGTACATTGGTTCTAATGTAACGACGGAGAACGACAAATTGATGTATAATCTCTTGCTG 240
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 181 AAGTACATTGGTTCTAATGTAACGAAGGAGAACGACAAGTTGATGTATAATCTCTTAATG 240
Query 241 GAATATGTTTCCGGCGGGAGTATGCACGATTTGATGAAGAATTCCGGCGGGAAGTTGCCG 300
|| ||||||||||| |||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct 241 GAGTATGTTTCCGGTGGGAGTCTTCACGATTTGATCAAGAATTCCGGCGGGAAGTTACCG 300
Query 301 GAGCCGGTGATTAGATCCTACACGCGTCAGATATTAAAAGGTTTGATGTATCTTCATGAT 360
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 GAGCCGTTGATTAGATCCTACACACGTCAGATATTGAAAGGTTTGATGTATCTTCATGAT 360
Query 361 CAAGGTATTGTTCATTGCGATTTGAAGAGCCAGAATGTGATGATCGGAGGAGAGATTGCA 420
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGGAATCGTTCATTGCGATGTGAAGAGCCAGAATGTGATGATCGGAGGAGAGATTGCG 420
Query 421 AAGATCGTTGATTTGGGCTGTGCTAAAACGGTGGAAGAGGATGAGAATTTGGAATTTTCC 480
|||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 421 AAGATCGTCGATTTGGGTTGTGCTAAAACGGTGGAAGAGAATGAGAACTTGGAATTTTCC 480
Query 481 GGTACACCGGCGTTTATGTCGCCGGAAGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCT 540
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GGTACACCGGCGTTTATGTCACCGGAGGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCT 540
Query 541 GATGTATGGGCTTTGGGGTGTACGGTGATAGAGATGGCTACTGGGACAAGTCCTTGGCCG 600
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 541 GATGTTTGGGCTTTGGGGTGTACGGTGATAGAGATGGCTACAGGGTCAAGTCCTTGGCCG 600
Query 601 GAGTTAAACGACGTCGTTGCTGCGATTTATAAGATTGGTTTCACCGGTGAGTCGCCGGAG 660
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 601 GAGCTAAACGACGTCGTTGCTGCTATTTATAAGATTGGTTTCACCGGCGAGTCGCCGGTG 660
Query 661 ATTCCGGTTTGGTTATCGGATAAAGGTCAAGACTTTTTGAGGAAATGTTTGAGAAAAGAT 720
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 661 ATTCCGGTTTGGTTATCGGAGAAAGGTCAAGACTTTTTGAGGAAGTGTTTGAGAAAAGAT 720
Query 721 TCAAAACAGAGATGGAGTGTTCAAGAATTGCTTCAACATCCGTTTCTTGATGAAGAAG-- 778
| ||||||||||||| |||| ||||||||||||||||||||||||| || |||||||
Sbjct 721 CCGAAACAGAGATGGACTGTTGAAGAATTGCTTCAACATCCGTTTCTCGACGAAGAAGAC 780
Query 779 -ACGAC---GACGAAGCTCGTAATTGTCTGAATTCTTCATCTCCAAGTACTGTGTTGGAT 834
||||| ||| || || |||| |||||||||||||||||||| |||||||||||||||
Sbjct 781 AACGACAGTGACCAAACTGGTAACTGTCTGAATTCTTCATCTCCTAGTACTGTGTTGGAT 840
Query 835 CAA-GGTTTTTGGGATTTATGTGAAACTTCAAGAAGTCGATTCATTAAAGCGGATCACGA 893
||| || ||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 841 CAACGG-TTTTGGGATTTATGTGAAACTTCGAGAAGTAGATTCATTAAAGAGGATCACGA 899
Query 894 AGACCCATTTGCAAATTCTACAAATTTCTTATGGGAT---GATTCGTTACCGGGTGATCG 950
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 900 AGACCCATTTGCAAATTCTACAAATTTCTTATGGGATGACGATTCTTTACCGGGTGATCG 959
Query 951 GATCAAGAAACTCGCCGGAGATGAGAATTCCGGTGAACTAGAGTGGGAAACGAACGGTTG 1010
||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||
Sbjct 960 GATCAAGAAACTCGCCGGAGACGAGAGTTCCGGTGAACCAGACTGGGAAACGAACGGTTG 1019
Query 1011 GATTGAAGTTAGAGGAGAGATAGAGAAACGTAACGAAGAAGAAGATGAGAATTGCGTTGA 1070
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 GATTGAAGTAAGGGGAGAGATAGAGAAACGTAACGAGGAAGAAGATGAGAATTGCGTTGA 1079
Query 1071 AGCAACGTCATTGGAGGA-G--GAAGAAGAAGTGGGAGGATTTGAGAATTGGATCTTGGA 1127
|||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1080 AGCAACGTCATTGGAGGAGGACGAAGAAGAAGTGGGAGGATTTGAGAATTGGATCTGGGA 1139
Query 1128 TCAACAAGACAGCTTGTTCTTGGAATATTCCCCTGAGGACAACATTAATTATTTTTACTC 1187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1140 TCAACAAGACAGCTTGTTCTTGGAATATTCCCCTGAGGACAACATTTATTATTTTTACTC 1199
Query 1188 TTATAATAACATCTTTCATGAAGATATAATTCTATATTATGATCATCTTGAAGATGGTTT 1247
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1200 TTATTATAACATCTTTGATGAAGATATAATTCTATATTATGATCATCTTGAAGATTGTTT 1259
Query 1248 TGTACTAAAAGATGATGATAATAATAAGAAAATTCGTTTCTTTAGCCACATTTCAAGTTC 1307
|||||||||| |||||||||||||||||| ||| |||||||||||||||| ||| |||
Sbjct 1260 TGTACTAAAATTTGATGATAATAATAAGAAGATTTTTTTCTTTAGCCACATTACAAATTC 1319
Query 1308 TTGTTTTGAGATTACTA 1324
|||||||||||||||||
Sbjct 1320 TTGTTTTGAGATTACTA 1336
> AT4G26890.1 | Symbols: MAPKKK16 | mitogen-activated protein kinase
kinase kinase 16 | chr4:13511839-13513406 FORWARD LENGTH=1568
Length=1568
Score = 568 bits (307), Expect = 7e-161
Identities = 938/1227 (76%), Gaps = 105/1227 (9%)
Strand=Plus/Plus
Query 16 TGGATAAGAGGACCAATCATAGGCCGAGGCTCAACAGCTACTGTCTC-ACTTGCAATCAC 74
|||| ||||||||||||||| || |||||||| || || |||||||| | | |||||| |
Sbjct 246 TGGACAAGAGGACCAATCATCGGTCGAGGCTCTACCGCCACTGTCTCTA-TAGCAATCTC 304
Query 75 AAACTCCGGTGA-CTTCTTCGCCGTCAAATCCACCGAGTTTTCTTCATCGGCGTTTTTGC 133
|| ||||||||| | |||||||||||||||| |||| || ||||| ||| | || ||||
Sbjct 305 AAGCTCCGGTGAGC-TCTTCGCCGTCAAATCTGCCGACTTATCTTCTTCGTCCTTGTTGC 363
Query 134 AGAGAGAACAATCGATTTTATCGA-ATTTGAGCTCTCCTTATATAGTCAAGTACATTGGT 192
||| ||| ||||| || || || | | |||||||||||| | || ||||| ||||| ||
Sbjct 364 AGAAAGAGCAATCAATCTTGTCTACA-TTGAGCTCTCCTCACATGGTCAAATACATAGGC 422
Query 193 TCTAATGTAACGACG-GAGAACGACAAATTGATGTATAATCT-CTTGCTGGAATATGTTT 250
|| | ||||| || |||| | || |||| |||| ||| | | || ||||||| ||||
Sbjct 423 ACTGGTTTAACG-CGCGAGAGCAACGGATTGGTGTACAATATAC-TGATGGAATACGTTT 480
Query 251 CCGGCGGGAGTATGCACGATTTGATGAAGAATTCCGGCGGGAAGTTGCCGGAGCCGGTGA 310
| || || | | | |||||||| || || ||||||||||| |||||||||||||||| ||
Sbjct 481 CTGGTGGAAATCTTCACGATTTAATCAAAAATTCCGGCGGTAAGTTGCCGGAGCCGGAGA 540
Query 311 TTAGATCCTACACGCGTCAGA-TATTAAAAGGTTTGATGTATCTTCATGATCA-AGGTAT 368
| ||||| ||||| ||||||| | || || |||||| |||||||||| || | ||| ||
Sbjct 541 TAAGATCATACACTCGTCAGATTCTT-AACGGTTTGGTGTATCTTCACGA-GAGAGGGAT 598
Query 369 TGTTCATTGCGATTTGAAGAGCCAGAATGTGAT-GAT-CGGAGGA--GAG-ATTGCAAAG 423
|||||| ||||| ||||||||||| || || | | | ||| | | | ||| |||
Sbjct 599 TGTTCACTGCGACTTGAAGAGCCATAACGTTCTGGTTGAGGAAAATGGCGTTTTG-AAA- 656
Query 424 ATCGTTGATTTGGGCTGTGCTAAAACGGTGGAAGAGGATGAGAATTTGGAATTTTCCGGT 483
|||| || |||| ||||||||| |||| ||| || | |||||||||||||
Sbjct 657 ATCGCCGACATGGGTTGTGCTAAATCGGT---------TGACAAGTCGGAATTTTCCGGT 707
Query 484 ACACCGGCGTTTATGTCGCCGGAAGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCTGAT 543
||||||||||||||| | || ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 708 ACACCGGCGTTTATGGCCCCAGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCGGCTGAT 767
Query 544 GTATGGGCTTTGGGGTGTACGGTGATAGAGATGGCT-ACTGGGA-CAAGTCCTTGGCCGG 601
|| ||||||||||| |||||| |||| ||||| | | ||| ||| |||| ||||||||||
Sbjct 768 GTGTGGGCTTTGGGATGTACGATGATCGAGAT-GATGACT-GGATCAAGCCCTTGGCCGG 825
Query 602 AGTTAAACGACGTCGTTGCTGCGATTTATAAGATTGG-TTT-CACCGGTGAGTCGCCGGA 659
|||||||||||||||||||||| || ||||||||||| ||| || || ||||||||||
Sbjct 826 AGTTAAACGACGTCGTTGCTGCAATGTATAAGATTGGATTTTCA--GGCGAGTCGCCGGC 883
Query 660 GATTCCGGTTTGGTTATCGGATAAAGGTCAAGACTTTTTGAGGAAATGTTTGA-GAAAAG 718
|||||| | ||| |||||||||||| | |||||||| ||| ||| ||||| | | || |
Sbjct 884 GATTCCCGCGTGGATATCGGATAAAGCTAAAGACTTTCTGAAGAATTGTTTAAAGGAA-G 942
Query 719 ATTCAAAA-CAGAGATGGAGTGTTCAAGAATTGCTTCAACATCCGTTTCTTGATGAAGAA 777
|| ||||| |||||||||| ||| ||||||| ||| ||||||| ||||||||||| ||
Sbjct 943 AT-CAAAAACAGAGATGGACTGTGGAAGAATTACTTAAACATCCATTTCTTGATGACGAC 1001
Query 778 GACGACGACGAAG-CTCGTAATTGTCTGAATT-C-----TTCATCTCCAAGTACTGTGTT 830
|| || | || | || ||||| |||| | ||| |||||||| ||||||||
Sbjct 1002 GAAGAAT-CTCAGACAAGTGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACTGTGTT 1060
Query 831 GGATCAAGGTTTTTGGGATTTATGTGAAA-CTTCAAGAAGTCGA-TTCA-TTAA-AGCGG 886
||||||| | |||||||||| ||| |||| || ||| ||||| | || | || | |
Sbjct 1061 GGATCAACGATTTTGGGATTCATGCGAAAGCTCCAA-AAGTC-ACTT-AGTTTCGATTG- 1116
Query 887 ATCACGAAGACCCATTTGCA-AATTCTACA-AATTTCTTATGGGATGATTCGTTACCGGG 944
|||| |||||||| ||||| ||| || | ||| ||| ||| || | | |||||
Sbjct 1117 ATCATGAAGACCCTTTTGCTGAATACT-CGGAAT--CTT-TGG-AT--T-C---ACCGGC 1165
Query 945 TGATCGGATCAAGAAACTCGCCGGAGATGAGAATTCCGG-TGAACTAGAGTGGGAAACG- 1002
|||||||||| |||||||||||||||||||| ||| | | | || || ||||| |||
Sbjct 1166 TGATCGGATCGAGAAACTCGCCGGAGATGAGTTTTCAAGCTTA-CTTGATTGGGATACGG 1224
Query 1003 AA--CGGT------TGGATTGAAGTTAGAGGAGAGA----TAGAGAAAC-GT-AA-CGA- 1046
|| || | |||||| |||| ||||| |||| || |||||| | || ||
Sbjct 1225 AAGACGATGGCGGATGGATTCAAGTGAGAGGCGAGAAACATAAAGAAACCGAGAAACGCG 1284
Query 1047 A-GA--A-GAAGATGAGAATTGCGTTGAAGCAACGTCATTGGAGGAGGAAGAAGAAGTGG 1102
| | | ||||| | || |||||||||||||||||||| | | | || || ||
Sbjct 1285 ACGGCGACGAAGACGTGATTTGCGTTGAAGCAACGTCATCGTCGCA--AAC--GAT-TGA 1339
Query 1103 GAGGATTTGA-GAATTGGATCTTGGATCAACAAGACAGCTTGTTCTTGGAATATTCCCCT 1161
|| | |||| || |||||| || || | |||||||||||||||| |||||||||| ||
Sbjct 1340 -AGAAGTTGAAGA-TTGGAT-TTCGA--ATCAAGACAGCTTGTTCTCGGAATATTCCTCT 1394
Query 1162 GAGGACAACATTAATTATTTTTACTCT 1188
|| |||| ||||||| |||| ||||||
Sbjct 1395 GACGACATCATTAATAATTTCTACTCT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5