BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495592
Length=2636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55100.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 3834 0.0
> AT5G55100.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr5:22361159-22364780 REVERSE
LENGTH=2893
Length=2893
Score = 3834 bits (2076), Expect = 0.0
Identities = 2407/2561 (94%), Gaps = 45/2561 (2%)
Strand=Plus/Plus
Query 1 ATCACACAATGGATCTGGAGATTGTTGGTCGTCACGCTCTCTTTTTTGACGACGATTCGA 60
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 109 ATCACACAATGGATCTAGAGATTGTTGGTCGTCACGCTCTCTTTTTCGACGATGATTCGA 168
Query 61 TGGCAACGTTTGTCAACTCTCCGACGGCGCTCGTTGACTGGAACAGCCTCTTTATTGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TGGCAACGTTTGTCAACTCTCCGACGGCGCTCGTTGACTGGAACAGCCTCTTTATTGACC 228
Query 121 GCTACGATGTTCGTCATCTCCTCTCTTCTCCTCCTCCCCCACGTATCAAACGCCGTCGTC 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 229 GCTACGATGTTCGTCATCTCCTCTCTTCTCCTCCTCCTCCACGTATCAAACGCCGTCGTC 288
Query 181 CGAATTCAAACGATGCTGACTTGGAATCGGAGCTCGATCACGAGCGTTATTTTGATTTAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 289 CGAATTCAAACGATGCTGACTTGGAATCGGAGCTCGATCACGAGCGTTATCTAGATTTAC 348
Query 241 CGTCGGAATCTCCATCTCCGTCGGATGATGA-G-A-ACGATATGAATGATGTTTCAGCAA 297
||||||||||||||||||||||||||||||| | | ||||||||||||| | ||||||||
Sbjct 349 CGTCGGAATCTCCATCTCCGTCGGATGATGATGAACACGATATGAATGAGGATTCAGCAA 408
Query 298 ATACAAATGGC-GATGGTTATCGCGCTGTCCCCTTTGCATACGGAAGCTCCAGTGATGTC 356
|||||||| || ||||||||||| |||||| | ||| |||| |||||||| |||||||||
Sbjct 409 ATACAAAT-GCGGATGGTTATCGTGCTGTCTCTTTTTCATATGGAAGCTCTAGTGATGTC 467
Query 357 AGTGACCAG--AAA-GATGCTGATATGGGATCTGGATTTCAGCCGCCTTTCCCCGTGCCT 413
| ||||||| ||| | ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 468 AATGACCAGAAAAATGCTGCTGATATGGAATCTGGATTTCACCCGCCTTTCCCCGTGCCT 527
Query 414 GATTATTTACTTCAAAACCTGCCTCCAACTGAGAAATTACATCAGATCATCACTAGGACG 473
||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 528 GATTACTTACGTCAAAACCTGCCTCCAACTGAGAAATTACATCAGATTATCACTAGGACT 587
Query 474 TCAAGCTTTGTAAGCAAACATGGTGGGCAATCTGAAATCGTCTTGAGAGTCAAACAAGGA 533
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 588 TCAAGTTTTGTAAGCAAACACGGTGGGCAATCTGAAATTGTCTTGAGAGTCAAACAAGGA 647
Query 534 GGCAACCCTACATTTGGGTTCTTGATGCCAGACCATCATCTTCACCCTTACTTTAGGTTT 593
| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 648 GACAACCCTACATTTGGGTTCCTAATGCCAGACCATCATCTTCACCTTTACTTTAGGTTT 707
Query 594 CTTGTTGACCATCAAGAGCTTTTGACGGGAAAGTCTTCTGTAGAAGAGAAAAAGAACGAA 653
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 708 CTTGTTGACCATCAAGAGCTTTTGACAGGAAAGTCTTCTGTAGAAGAGAAAAAGAACGAA 767
Query 654 AGTGAGAAGGATGGTGGAGCTTTGTCCTTGCTTGGTTCGGTTTATGGGACTGTAGAAGAT 713
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 768 AGTGAGAAGGATGGTGGAGCTTTGTCATTGCTTGGTTCGGTTTATGGGACTGTAGAAGAT 827
Query 714 GAAGATGCTAACGAAGAGTCTGCAAATGACTCTAAAACAAGTGAGTCTGCCAAAGGCGAT 773
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 828 GAAGATGCTAACGAAGAGTCTGCAAACGACTCCAAAACAAGTGAGTCCGCCAAAGGTGAT 887
Query 774 GATGGTGTTAAGGTAACTGATTCCAATGGACCCGAATGGTCGAAAGGAGCTGTAAAGATT 833
|||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 888 GATGGTGTTAAGGTAACTGATTCCAATGGACCTGAAGGGTCGAAAGGAGCTGCAAAGATT 947
Query 834 GCCTCTAAGCATTCTCTGCCGTTGAATGATCAGGCATCTGTCGTAAAAAGAAATCCTTCT 893
|||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||
Sbjct 948 GCCTCTAAGCATTCTCTGCCGTTGAATGATCATGCATCTTTCATAAAAAGAAATCCCTCT 1007
Query 894 GTCAGCGCAGTAAATGTTGTAGAGAGGAAGCAGATCAATACAGAAGATAATGCTACAGAA 953
||||||||||||||||||||||||| ||||||| || | || |||||||
Sbjct 1008 GTCAGCGCAGTAAATGTTGTAGAGAAGAAGCAG----AT-C-------AA---TACAGAA 1052
Query 954 AAACTTTTGACGTCTGATAAGTCGCAACCCAAGCTTGAACTGCAGATTGTGGAGCCGTCT 1013
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1053 AAACTTGTGACGTCTGATAAGTCGCAACCCAAGCTTGAACTGCAGATTGTGGAGCCGACT 1112
Query 1014 ACTGAGATGAAAAGAGTGATTGATAAGATAGTAGACTTCATCCAAAAGAACGGGAAAGAA 1073
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1113 ACTGAGATGAAAAGAGTGATTGATAAGATAGTAGACTTCATTCAAAAGAACGGGAAAGAA 1172
Query 1074 CTAGAGGCTACTCTTGTTGCACAGGATGTGAAAAACGGAATGTTTCCATTCTTACGTCCG 1133
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1173 CTAGAGGCTACTCTTGTTGCACAGGATGTGAAATACGGGATGTTTCCATTCTTACGTCCA 1232
Query 1134 GCTAGCTTATACCATTCATATTATCGGAAGGTTCTCCAAGAAGCCGAAGAGTTAAAATCA 1193
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 TCTAGCTTATACCATGCATATTATCGGAAGGTTCTCCAAGAAGCCGAAGAGTTAAAATCA 1292
Query 1194 TGTGACAAAGGCGTCATTACCAGAAAGGAAGACGTGAAGCAAGAGAAGATGGGCAATGCT 1253
||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1293 GGTGACAAAGGCGTTATTATCAGAAAAGAAGACGTGAAGCAAGAGAAGATGGGCAATGCT 1352
Query 1254 GTAAAAGATGGCAAATATGCGTTTGGGAGTGTTTTACCAGATGATTCTGCCAAGAAAGAG 1313
||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GTAAAAGATAGCAAACACGGGTTTGGGAGTGTTTTACCAGATGATTCTGCCAAGAAAGAG 1412
Query 1314 AAACTAAAAGTTGTTAGTGACAAACCAAAGGTCGAGTTGCACAACGAATCATTCAAGCCT 1373
||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1413 AAACTAAAAATGGTTAGTGACAAACCAAAGGTCGAGTTGCACAATGAACCATTCAAGCCT 1472
Query 1374 GTCCAACCGCAGATGAGGGTCAATGTGGATGCGAATACTGCTGCTGCTATTCTTCAAGCG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GTCCAACCGCAGATGAGGGTCAATGTGGATGCGAATACTGCTGCTGCTATTCTTCAAGCG 1532
Query 1434 GCTAGAAGAGGCATAAGGAATCCCCAGTTGGGGATCCTATCAGGCAAACCCATGGATGAG 1493
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1533 GCTAGAAGAGGCATAAGGAATCCCCAGTTGGGGATTCTAACAGGCAAACCCATGGATGAG 1592
Query 1494 ACTTCTCAGAGCCTTGGAAATGATG-GAAGTTACCCTTCATCTAAGTCCCCTGATTTGGC 1552
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1593 ACTTCTCAGACCCTTGGAAATGATGTGA-GTTACCCTTCATCTAAGTCCCCTGATTTGGC 1651
Query 1553 CAAATCTTCAGGTCAATCGCTCTCTGGCTCGACTGCTCCTAGTGAAGCTGATTCATCTGA 1612
||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 1652 CAAATCTACAGGTCAATCACTCTCTGGCTCGACTGCTGCTAGTGAAGCTGATTCTTCTGA 1711
Query 1613 AGCAGGCTTGTCTAAGGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTT 1672
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 AGCAGGCTTGTCTAAAGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTT 1771
Query 1673 TGTGGCCAAGTTAAAACCTGATGCGCACCCTGTGCAACAAGCTGAACCGTCGCGAAGCAT 1732
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1772 TGTGGCCAAGTTAAAACCTGATGCGCAGCCAGTTCAACAAGCTGAACCGTCGCGAAGCAT 1831
Query 1733 ATCAGTTGAACCGTTGGACTCTGGGATTTCTGGATTAGGTGCTAATGCTGCCAAAGAAAG 1792
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1832 ATCAGTCGAACCGTTGGACTCTGGGATTTCTGGATTAGGTGCTAAGGCTGCCAAAGAAAG 1891
Query 1793 AGACAGTAGCTCGATTCCATCTGTAGCTGAGACAAAACTAGCAGATGATGGTAACAGTGA 1852
|||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 1892 AGACAGTAGCTCGATTCCATATGTAGCTGAGTCAAAACTAGCGGATGATGGTAACAGTGA 1951
Query 1853 AAGACGACCAAAGAGGAATTACCGTTCGAGATCACATagagatgaagatgttaagatgga 1912
||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1952 AAGACGATCAAAGAGGAATTACCGTTCGAGATCACAGAGAGATGAAGATGGTAAGATGGA 2011
Query 1913 acaagaagaaggagaagaggaagagagcagcatggatgaagtgacagaagaaACCAAGAC 1972
||||| || | | | |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2012 ACAAG--GA-G-A-A-GAGGAAGAGAGCAGCATGGACGAAGTTACAGAAGAAACCAAGAC 2065
Query 1973 TGATAAGAAGCATTCATCTAGTAGAAAACGGCATATTAGGCATAAACATAAGACACGATA 2032
||||||||||||||||| ||||||||||||||||| | | ||||||||||||||
Sbjct 2066 TGATAAGAAGCATTCATGTAGTAGAAAACGGCATA--A---A----CATAAGACACGATA 2116
Query 2033 CTCTTCCAAGGACAGACATTCTCGGGACAAGCACAAGCATGCGAGCTCCTCGGATGATGA 2092
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2117 CTCTTCCAAGGACAGACATTCTCGGGACAAGCACAAGCATGAGAGCTCCTCAGATGATGA 2176
Query 2093 GTATCACAGCCGTTCACGTCATAGACACAGATACAGCAAATCTTCAGATAGGCATGAGCT 2152
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2177 GTATCACAGTCGTTCGCGTCATAGACACAGACACAGCAAATCTTCAGATAGGCATGAGCT 2236
Query 2153 ATATGATTCTTCTGATAACGAGGGTGAGCACCGACACAGATCTAGTAAGCATAGCAAAGA 2212
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2237 TTATGATTCTTCTGATAATGAGGGTGAGCACCGACACAGATCCAGTAAGCATAGCAAAGA 2296
Query 2213 CGTTGATTATTCTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGATAAA-C 2271
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2297 CGTTGATTATTCTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGA-AAAGC 2355
Query 2272 ATCGTGATTCATCTGATGATGAACATCATCATTACAACCGACACAGATCCAGTAGGCGCA 2331
| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 2356 ACCGTGATTCATCTGATGATGAACATCATCAC--CA-CCGACACAGATCCAGTAGACGCA 2412
Query 2332 AACACGAGGACTCTTCAGAAGATGAGCATGGTCATCGACACAAGTCTAGTAAACGTATAA 2391
| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 2413 AGCACGAGGACTCTTCAGACGTTGAGCATGGTCATCGTCACAAGTCTAGTAAACGTATAA 2472
Query 2392 AGAAAGATGAGAAAACAGTGGAAGAGGAGGCTGTTTCAAAGTCAGATCAGTCTGATCTTA 2451
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2473 AGAAAGATGAGAAAACAGTGGAAGAGGAGACTGTTTCAAAGTCAGATCAGTCTGATCTTA 2532
Query 2452 AAGCTTCTCCTGAAGATAACATCCAGTACCCGCGAAACGAACCAACTCAAGTTTCGGATG 2511
|||| ||||||| ||||||||||| ||| | || ||| |||||| |||||||||||||||
Sbjct 2533 AAGCATCTCCTGGAGATAACATCCCGTATCTGCAAAATGAACCATCTCAAGTTTCGGATG 2592
Query 2512 AGCTAAGAGCCAAAATCCGTGCCATGTTAGCTGATACCTTG 2552
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2593 AGCTAAGAGCCAAAATCCGTGCCATGTTAGCTGATACCTTG 2633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130885554287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5