BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495599
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55140.1 | Symbols: | ribosomal protein L30 family protein ... 998 0.0
> AT5G55140.1 | Symbols: | ribosomal protein L30 family protein
| chr5:22380996-22382028 FORWARD LENGTH=725
Length=725
Score = 998 bits (540), Expect = 0.0
Identities = 653/705 (93%), Gaps = 17/705 (2%)
Strand=Plus/Plus
Query 1 AAACGCGAATCTCAAAGATTTTCCGAGCTCTGTTCGCCGTCTTGAGTACAGTC-TACGAC 59
||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 18 AAACGCGAATCTCAAAGATTTTCCGAGCTCTGTTCGCCGTCTTGACTACACTCGT-CGAC 76
Query 60 GATCTCTTTCACCGGACTTCTCTCGTCTCTGTTTCTTCAAGGGAGAATGAGTGATAAAGG 119
|||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||
Sbjct 77 GATCTCTTTCACCGGACTTCTCCCGTCTCTGTTTCCTCAAGAGAGATTGAGTGATAAAGG 136
Query 120 AGAC-------AAAAAGGATGAGTGGTTTTAGAGCTTTTAAAGCGA-AAGTGCCTATTGA 171
|||| |||||| |||||||||||||||||||| ||||| | |||||||||||||
Sbjct 137 AGACAAAAAAAAAAAAGAATGAGTGGTTTTAGAGCTTTCAAAGC-ACAAGTGCCTATTGA 195
Query 172 ATGGAGCCAGAGCTTGTACATAACCTTAGTGAGAGGTCTCCCTGGAACCAGGAAGCTTCA 231
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 196 ATGGAGCCAGAGCTTGTACATAACCTTAGTAAGAGGTCTCCCTGGAACAAGGAAGCTTCA 255
Query 232 CAGGCGAACGCTTGAAGCTATGGGACTTCGTAGATGCCATCGTACGGTTTTGCACTCAAA 291
||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 256 CAGACGAACACTTGAAGCTATGGGACTTCGTAGATGTCATCGTACTGTTTTGCATTCAAA 315
Query 292 CAATTCATCCATTAGAGGAATGATTAACCAGGTTAAAAGGATGGTTGTTGTTGAAACAGA 351
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 316 CAATTCATCCATTAGGGGAATGATTGATCAGGTTAAAAGGATGGTTGTTGTTGAAACAGA 375
Query 352 AGAGATGTACAATGCTCGTAAAGAAGCAGAAGCCAACCACAAAGCTTTGCGCCCGCCTCT 411
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGAAATGTACAATGCTCGTAAAGAAGCAGAAGCCAACCACAAAGCTTTGCGCCCGCCTCT 435
Query 412 CGTTGTCAGTCATTCAAGCCCTGCAACAGATTCATCCAACTTGTCTTGAGAGTACTTTCA 471
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 436 CGTTGTCAGTCATTCGAGTCCTGCAACAGATTCATCCAACATGTCTTGAGAGTACTTTCA 495
Query 472 TAAGATGGTAATCTCTTCTACCGTCAGTTTGATAAGATCCGCTTG-ATATTGTAGGCGCC 530
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 496 TAAGATGGTAAGCTCTTCTACCGTCAGTTCGATAAGATCCGCTTGGATATTGTAGGCGGC 555
Query 531 TTAAGTTTAAGTTCTCAGTAA-GATGTCCAGGAAGTAA-CTAGTCCTAGACGCTTTATAA 588
||| |||||||||||| ||| | |||||||||||||| |||||||||||||||| ||||
Sbjct 556 TTATGTTTAAGTTCTCTCTAAAGGTGTCCAGGAAGTAAACTAGTCCTAGACGCTTGATAA 615
Query 589 GAAATGTCGGTATCAGTGTGTTTGGTGCCTCTT-ATGTTTTT-GTATACACTGAATCCTT 646
||||||| ||||||||||||||||||||||||| |||||||| |||||||||| || |||
Sbjct 616 GAAATGTTGGTATCAGTGTGTTTGGTGCCTCTTTATGTTTTTTGTATACACTGGATACTT 675
Query 647 GTGTATGTTT-GCTCTCATTTTGTCAATCTCAAATCTATTGGTTT 690
|||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 676 GTGTATGTTTTGCTCTCATTCTGTCAATCTCAAATCTATCGGTTT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5