BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495600
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55150.1 | Symbols: | Protein of unknown function (DUF295) ... 1170 0.0
> AT5G55150.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22382275-22383392 REVERSE LENGTH=1083
Length=1083
Score = 1170 bits (633), Expect = 0.0
Identities = 741/792 (94%), Gaps = 12/792 (2%)
Strand=Plus/Plus
Query 338 GAAACCCGTTTACCAAAAGCGTTACTTCTCTGCCACCTTTGATATCTTTTGAGGATGTTC 397
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 303 GAAACCCG-TTACCAAAAGCGTTACTTCTCTGCCTCCTTTGATATCTTTTGAGGATGTTC 361
Query 398 AGCGGTTGCTTCAGTCTCAAGCCATCTTTCCAGACTCTGAAGCCCTAAAGAACTTTGTAA 457
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 362 AGCGGTTGCTTCAGTCTCAAGCCATCATTCCAGACTCTGAAGCCCTAAAGAACTTTATAA 421
Query 458 AGAAAGCAGTCTCTTCAACAAGTTTATTAGACGATGAATGGGTTGTGCTCGTAATATACA 517
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 422 AGAAAGCAGTCTCTTCAACGAGTCTATTAGACGATGAATGGGTTGTGCTCGTAATCTACA 481
Query 518 ACACTGATAGAAAACTAGCGTTCTGCAGACGCGGAGATAAACAATGGACAGATTTGGAAT 577
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 482 ACACTGATAGGAAGCTAGCGTTCTGCAGACGCGGAGATAAACAATGGACGGATTTGGAGT 541
Query 578 CTGTTGCCTCTGCTGTCGATGATATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACA 637
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 542 CTGTTGCCTCTTCTGTCGATGACATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACA 601
Query 638 GATTCGGAGAGATATATCACTGTGAGCTTAGTCCTAACAGTCCAAAAGCTATTCCTTTGT 697
|| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |
Sbjct 602 GACTCGGAGAGATATATCACTGTGAGCTTAGTGCTAACAACCCAAAAGCTACTCCTTTAT 661
Query 698 GCAGCTCCTCACCGTTTCGGTATGACTCTTGCAAGAAATACTTTGCAGAGTCGGATTACG 757
||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 662 GCAGCACCTCGCCGTTTCGGTACGACTCTTGCAAGAAATACTTGGCAGAGTCGGATTACG 721
Query 758 ATGAACTGTGGGTGGTTCTAAAGAAGCTGGAGCTTAATGACGATTGTGATTTCGCAACCT 817
| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 722 ACGAACTGTGGGTGGTCCTAAAGAAGCTGGAGCTTAACGACGATTGTGATTTCGAAACCT 781
Query 818 CTTTCGAGATTTACGAATTCAATCGCGAGACTAATGAATGGACAAAGGTGATAAGCTTGA 877
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 782 CTTTCGAGATTTACGAATTCAATCGCGAGACTAACGAATGGACAAAGGTGATGAGCTTGA 841
Query 878 GAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCGGTTTTAGCAGGTGAAA 937
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 842 GAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCTGTTTTAGCAGGTGAGA 901
Query 938 GAGGATCTAGAGAATTCATCAAAGACAACTCAGTTTATTTCATTGATGGTGATGACCCAA 997
|||||| | || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 902 GAGGAT-T------TT--TCAAAGACAACTCAGTTTATTTCATTGATGGTGATGATCCAA 952
Query 998 GTATAGGAGGA-CTAGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATC 1056
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GTGTAGGAGGATC-AGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATC 1011
Query 1057 ATGAAAATCTATCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCGCACCTACAAAT 1116
|||||||| || |||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 1012 ATGAAAATTTACCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCACACCAACAGAC 1071
Query 1117 GTTCTTCAGTGA 1128
|||| |||||||
Sbjct 1072 GTTCCTCAGTGA 1083
Score = 472 bits (255), Expect = 4e-132
Identities = 287/303 (95%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTATCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACGCTGTATTT 60
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGCTCTACCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACACTGTATTC 60
Query 61 CACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACCGTCTGTTCTTCTTGGAAG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACGGTCTGTTCTTCTTGGAAG 120
Query 121 GATTCTTCTTCTGCCGTATACTACAGCAAGAAGTTTGCTCCTTTTCTGTTTGTTTCCCAT 180
||||||||||| ||||||||||||||| || |||| |||||||||||||| ||||||||
Sbjct 121 GATTCTTCTTCGGCCGTATACTACAGCCGGACGTTTTCTCCTTTTCTGTTTATTTCCCAT 180
Query 181 CTCTCTTCCAATGAAGATATCCGATTCTTCGATCAATTTAGAGTTTTGTCTCCGGGAAAG 240
||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||
Sbjct 181 CTCTCTTCCAATGAAGAAATCCGATTCTCCGACCAGTTTAGAGTTTTGTCTCCGGGAAAG 240
Query 241 TTGGGTTTCTCAGGGAACCAACAAGCGTGGGTGTGTGGCAGTACACTAGGGTTTTTGTTG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TTGGGTTTCTCAGGGAACCAACAAGCGTGGGTTTGTGGCAGTACACTAGGGTTTTTGTTG 300
Query 301 ACG 303
|||
Sbjct 301 ACG 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5