BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495605
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55200.1 | Symbols: | Co-chaperone GrpE family protein | ch... 1784 0.0
AT4G26780.1 | Symbols: AR192 | Co-chaperone GrpE family protein... 501 6e-141
AT5G55210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 111 1e-23
> AT5G55200.1 | Symbols: | Co-chaperone GrpE family protein |
chr5:22394607-22396572 FORWARD LENGTH=1244
Length=1244
Score = 1784 bits (966), Expect = 0.0
Identities = 1068/1117 (96%), Gaps = 8/1117 (1%)
Strand=Plus/Plus
Query 1 TTTTGCTTTTCTTCTTCGATTCATTGCGCGAATC-TCCCGTGATGTTGGTGTCTAGGGTT 59
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 58 TTTTGCTTTTCTTCTTCGATTCATTGCGCGAATCAT-CCGTGATGTTGGTGTCTAGGGTT 116
Query 60 TTATCGAGAGTTTCTCGCAGCGCAGGCTTACGCTCGTCTCTCTCCTCCGTCGTTACTCCG 119
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 117 TTATCAAGAGTTTCTCGCAGCGCAGGCTTACGCTCGTCTTTCTCCTCCGTCGTTACTCCG 176
Query 120 AAGAGGAATCAGATTCCGATTGTTTCAAGCCGATTTCACTCCCTCGTTCATGGAAATCCC 179
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 177 AAGAGGAATCAGATTCCGATTGTTGCAAGCCGATTTCACTCCCTCGTTCACGGAACCCCC 236
Query 180 AACAAGCTTGTTGCAGTTCCAGTGTCGCTCCTAAACCATGGAATTCTCGATTTGAATGTT 239
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 237 AACAAGCTTGTTGCAGTTCCAGTGTCGCTCCGAAACCATGGAACTCTAGATTTGAATGTT 296
Query 240 CTTCAAAGGTTCGGCtttttttCCTCTTCCTCAGCTGAACCTAAGGGAAATGAGAGTAAC 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 CTTCAAAGGTTCGGCTTTTTTTCCTCTTCCTCAGCTGAACCGAAGGGAAATGAGAGTAAC 356
Query 300 ACCGAAGTACCAAAGACCGGCGAAGCTTCTGAGGATGTGGAGGTGGGGAGAGATACAGAC 359
|||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||
Sbjct 357 ACCGAAGTACCAAAGACCGGCGAAACTTCTGAGAATGTGGAGGTGGGGAAAGCTACAGAT 416
Query 360 GCAGAGATTGATTTCGATGATATGTCAAGAGACGATTTGGTGAAGCTTGTGGGTGAGAAG 419
||||||||||| ||||| ||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 417 GCAGAGATTGACTTCGACGATTTGTCAAGAGACGATTTAGTGAAGCTTGTGAGTGAGAAG 476
Query 420 GAAGATCTTTTGAAGGTTCAGCAGAAAGACATAAAGGAAATGAAAGATAAATTTCTTCGC 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 GAAGATCTTTTGAAGGTTCAGCAGAAAGACATAATGGAAATGAAAGATAAATTTCTTCGC 536
Query 480 ACTTATGCTGAGCAGCAGAATCTAATGGACAGGACTAAACGTAATGCTGAAAGCGCCAAA 539
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 537 ACTTATGCTGAGCAGCAGAATCTTATGGACAGGACTAACCGTAATGCTGAAAGCGCCAAA 596
Query 540 AAGTTCGCCGTACAGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGA 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGTTCGCTGTACAGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGA 656
Query 600 GCTTCTTCAGTTGTCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTCGGCTGGT 659
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 657 GCTTCTTCTGTTGTCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTTGGCTGGT 716
Query 660 GCTGCTCCACTGTTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCA 719
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCTACTCCACTGTTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCT 776
Query 720 GAGGTGTTTAAAAAATCTGGTTTGGTGAAAGAAGATCCTTTAAATGAACCATTTGATCCA 779
|||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 777 GAGGTGTTTAGAAAAGCTGGTTTGGTGAAAGAAGATCCTTTAAATGAACCGTTTAATCCA 836
Query 780 AACAGACATAACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACAGACATAACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCT 896
Query 840 CATGTCCTTAAGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGT 899
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CATGTCCTAAAGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGT 956
Query 900 GTTACTTGCGCAGTGGAGAATCAAGAAGGCGAG-AAAGAGTCTGCAGCTTGAAAAACTTA 958
||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 957 GTTACTTGCGCCGTGGAGAATCAAGAAGGCG-GCAAAGAGTCTGCAGCTTGAAATACTTA 1015
Query 959 AA-CAACGAGAGTTAAGCTTT-GTTTT-AACATCTTCATGAGTTAtttttttAGTTAATA 1015
|| || ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1016 AAACATCGAGAGTTAAGCTTTTGTTTTTAACATCTTCATGAGTTCTTTTTTTAGTTAATA 1075
Query 1016 GTTCTCTTTCTT-GCATATTCATTGGAGGAACAAGATTCCCATAAAGTAGCAGGACTTTG 1074
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 1076 GTTCTCTTTCTTTGCATATTCATTGGAGGAACAAGATTCCCATAAGGTAGCATGACTATG 1135
Query 1075 CTCTGTACTTCCAGGGAAACCCTGGTTCTGTAACTTT 1111
|||||||||||||||||| ||||||||||||||||||
Sbjct 1136 CTCTGTACTTCCAGGGAAGCCCTGGTTCTGTAACTTT 1172
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1112 AGCCAAACTCTTGGTAAAAGCTTCAAATCTTACATATATATAACTTCTTC 1161
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1193 AGCCAAACTCTTGGTAAAAGCTTCAAATCTTACATTTATATAACTTCTTC 1242
> AT4G26780.1 | Symbols: AR192 | Co-chaperone GrpE family protein
| chr4:13484839-13486771 REVERSE LENGTH=1422
Length=1422
Score = 501 bits (271), Expect = 6e-141
Identities = 466/559 (83%), Gaps = 18/559 (3%)
Strand=Plus/Plus
Query 393 GATTTGGTGAAGCTTGTGGGTGAGAAGGAAGATCTTTTGAAGGTTCA-GCAGAAAGACAT 451
|||||||||||||| || | |||||||||||| || || | | | || |||| ||
Sbjct 638 GATTTGGTGAAGCTCGTAGCTGAGAAGGAAGAGCTACTGTCTGAGAAGGAAG-AAGAGAT 696
Query 452 AAAGGAAATGAAAGATAAATTTCTTCGCACTTATGCTGAGCA-GCAGAATCTAATGGACA 510
||| | ||||||| ||| |||||||||||||||||||| | | ||||| | |||||||
Sbjct 697 TAAGCAGTTGAAAGACAAAGTTCTTCGCACTTATGCTGAG-ATGGAGAATGTCATGGACA 755
Query 511 GGACTAA-ACGTAATGCTGAAAGCGCCAAAAAGT-TCGCCGTACAGAACTTTGCAACGAG 568
| || || |||| ||||||||| | ||||||||| | ||||||||||| ||||||| |||
Sbjct 756 GAAC-AAGACGTGATGCTGAAAACACCAAAAAGTAT-GCCGTACAGAATTTTGCAAAGAG 813
Query 569 CCTTTTGGATGTGGCGGATAATCTTGAAAGAGCTTCTTCAGTTGTCAAAGAGAGTTTTTC 628
||| |||||||||||||||||||||| |||||||||||| ||||||||||| || || ||
Sbjct 814 CCTATTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTGTCAAAGAAAGCTTCTC 873
Query 629 GAAGATCGACACTTCAAAAGATTCGGCTGGTGCTGCTCCACTGTTAAAAAACCTATTAGA 688
||| | ||||| ||| ||||||| ||||| || |||||||| ||||| | ||| |||||
Sbjct 874 AAAGCTTGACACCTCAGAAGATTCTGCTGGAGCAGCTCCACTATTAAAGACCCTTTTAGA 933
Query 689 AGGAGTGGAGATGACTGAGAAACA-ATTAGCAGAGGTGTTTAAAAAATCTGGTTTGGTGA 747
|||||||||||||||||||||||| || || ||||| ||||| |||| |||| ||| |
Sbjct 934 AGGAGTGGAGATGACTGAGAAACAGCTT-GCTGAGGTATTTAAGAAATTTGGTATGGAG- 991
Query 748 AAG-AAGATCCTTTAAATGAACCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTC 806
||| | |||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 992 AAGTATGATCCTATAAACGAGCCATTTGATCCAAACAGACATAACGCAGTGTTCCAAGTC 1051
Query 807 CCAGATGCTTCCAAGCCAAAAGGCACAATTGCTCATGTCCTT-AAGTCTGGATACTCATT 865
|| |||||||| |||||| |||||||| ||||||||||| || |||||||||||| | |
Sbjct 1052 CCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTC-TTGAAGTCTGGATACACGCT 1110
Query 866 GTACGATCGAGTTATAAGGCCAGCTGAGGTTGGTGTTACTT-GCGCAGTG-GAGAATCAA 923
||| || ||||||||||| |||||||||||||||||||| | | || | ||||| |||
Sbjct 1111 GTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTACCCAGGG-AG-GAGAGAACCAA 1168
Query 924 GAAGGCGAGAAAGAGTCTG 942
|||| ||||||||||||
Sbjct 1169 GAAGAAAAGAAAGAGTCTG 1187
> AT5G55210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G22320.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:22396426-22397446 REVERSE LENGTH=860
Length=860
Score = 111 bits (60), Expect = 1e-23
Identities = 120/145 (83%), Gaps = 20/145 (14%)
Strand=Plus/Minus
Query 1037 TTGGAGGAACAAGATTCCCATAAAGTAGCAGGACTTTGCTCTGTACTTCCAGGGAAACCC 1096
||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||
Sbjct 860 TTGGAGGAACAAGATTCCCATAAGGTAGCATGACTATGCTCTGTACTTCCAGGGAAGCCC 801
Query 1097 TGGTTCTG-------TA-AC---TT--T-------AGCCAAACTCTTGGTAAAAGCTTCA 1136
|||||||| || || || | |||||||||||||||||||||||||
Sbjct 800 TGGTTCTGTAACTTTTACACAAATTCATAAGCCAAAGCCAAACTCTTGGTAAAAGCTTCA 741
Query 1137 AATCTTACATATATATAACTTCTTC 1161
|||||||||| ||||||||||||||
Sbjct 740 AATCTTACATTTATATAACTTCTTC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5