BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495607
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55220.1 | Symbols: | trigger factor type chaperone family ... 2608 0.0
> AT5G55220.1 | Symbols: | trigger factor type chaperone family
protein | chr5:22397616-22400842 FORWARD LENGTH=1869
Length=1869
Score = 2608 bits (1412), Expect = 0.0
Identities = 1640/1747 (94%), Gaps = 27/1747 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAAGTGGCGCTTCATTCATTAG--C---TC----TAAGCAAGAAGAGAGAGCGAA 51
||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1 AAGAAGAAGTGGCGCTTCATTCATTAGCTCTGTTCAGTATAAGCAAGAAGAGAGAGCGAA 60
Query 52 AATGGAGCTCTGTGTTATCAGCACGACGACGACGGCGAAGGCGATTAATACGTTTCTTCC 111
||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||
Sbjct 61 AATGGAGCTCTGTGTTATCAGCACGACTACGACGGTGAAGGCAATTAATCCGTTTCTTCC 120
Query 112 GTCCATTACACGCCGTGTTAGCTCCCGTCTCATCCAATCAGATAGTGTGTTACAGTTTGG 171
||| |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 121 GTCTATTACACGTCGTGTTAGTTCCCGTCTCTTCCAATCAGATAGTGTGCTACAGTTTGG 180
Query 172 TAGGAGGCTGAAGAAACCAATTAGCA-GCCAATTGGAGATGTCTTGTGTCTCTAGAAATT 230
| ||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 181 TGGGAGGTTGAAGAAACCAATTAGCAGGCC-TTTGGACATGTCTTGTGTCTCTAGAAAAA 239
Query 231 TTGGACTTCTCGGAGGTTCTATTTCTATTAGCGGCGGTGGTGATTTTAGGCTGTTCGCGG 290
||||| || |||||| || ||| || | | |||||| |||||||||| |||||||
Sbjct 240 TTGGATTTTTCGGAGATTTTATGTC----A-C-ATGGTGGTAATTTTAGGCTATTCGCGG 293
Query 291 CGGCTTCTCCGGCGGTTGAAACCAGTGTAAAGGAAGACAAGCTTCCAGCTGATCTTAAGG 350
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 294 CGGCTTCTCCAGCGGTTGAAACTAGTGTAAAGGAAGACAAACTTCCAGCTGATCTTAAGG 353
Query 351 TCACCGAGACTCTACAGGCGAATTCAAGTGTGAAATTGAGTGTGGAAGTTCCAGCCATTG 410
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 354 TCACGGAGACTGTACAGGCGAATTCAAGTGTGAAATTGAGTGTGGAAGTTCCAGAAATTG 413
Query 411 TTTGTGAAGATTGTTACCAACGAGTTCTAACAGAGTTCATGAAGCTCTCAAAGGTGCCTG 470
| ||||||||||||||||||||||| || || || |||||||| ||||||||||||||||
Sbjct 414 TCTGTGAAGATTGTTACCAACGAGTCCTTACCGAATTCATGAAACTCTCAAAGGTGCCTG 473
Query 471 GATTCCGTCCTAAAACGAGAGTGCCAGAGAATATTATTGTTGGTTTCGTTGGGAGGCAAT 530
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 474 GATTCCGTCCTAAAACAAGAGTTCCAGAGAATATTATTGTTGGTTTCGTTGGGAGGCAAT 533
Query 531 ACGTTTTGAGAGCAACTGTTGAATCTATCTTGAAGAGAACACTTCCTCACGCCATGGAAT 590
| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 534 ATGTTCTGAGAGCAACTGTTGAATCTATCTTAAAGAGAACACTTCCTCACGCCATGGAAT 593
Query 591 CAGTGACTGGAAGGGCTTTAAAAGACTCAATACAGATTGTAAGCAGCTTTCCAGAGATGG 650
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 594 CAGTGACTGGAAGGGCTTTAAAAGACTCGATACAGATTGTAAGCAGTTTTCCAGATATGG 653
Query 651 AGAAGGCTTATTCTAAGCTCAAGACTCTTAGTTATGAGGTGGTTGTTGATGTTGTGCCTG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 654 AGAAGGCTTATTCTAAGCTCAAGACTCTTAGTTATGAGGTGGTTGTTGATGTTGTACCTG 713
Query 711 AACTAAGATGGAATCCTGAGGATGGGTACAAAAATATGAAGGTCGTTGTAGAACTAGGCG 770
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 AACTAAAATGGAATCCTGAGGATGGGTATAAAAATATGAAGGTCGTTGTAGAACTAGGCG 773
Query 771 ACGAGATAGATGCGAAAAAAGCTTGTGAAAGACAACTAAGACAGAAATACAAGTCCCTTG 830
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 ATGAGATAGATGCAAAAAAAGCTTGTGAAAGACAACTAAGACAGAAATACAAGTCTCTTG 833
Query 831 GTGCGCTGAAGATTGTAACTGACCGAGGGCTACAGGTGGGAGATCTTGCAGTCGTTGATA 890
||||| ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct 834 GTGCGTTGAAGATTGTAACCGAGCGAGGGCTACAGGTGGGAGATCTAGCAGTTGTTGATA 893
Query 891 TTTCTGCTACAACTATAGATGAGGATGGATCAACGGGTCAAGCGATTCCAGATGCGGAAA 950
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 894 TTTCTGCTACAACTATAGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAA 953
Query 951 GCAAAGGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTGATT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCAAAGGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTGATG 1013
Query 1011 CAATCATAGGAATTAGAGCTGGCGAATCGAAGTCATTCACGCTTGTGTTTCCTGAATCAT 1070
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1014 CAATCATAGGAATTCGAGCAGGCGAATCAAAGTCATTCACGCTTGTGTTTCCTGAATCAT 1073
Query 1071 GGAAACAAGAAAGTCTTCGTGGCCAACGTGCTCAATTCACTGTTGACTGCAAGGAACTTT 1130
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GGAAACAAGAAAGTCTACGTGGCCAACGTGCTCAATTCACTGTTGACTGCAAGGAACTTT 1133
Query 1131 TCTACAGAGATTTACCAACATTAGATGACTCACTTGCTGATAAATTACTTCCTGGATGCA 1190
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1134 TCTACAGAGATTTACCAACATTAGATGACTCACTCGCTGATAAATTGCTTCCTGGATGCA 1193
Query 1191 CCACTTTAAAGGAGGTTGAAGAAACTCTGGCTAAAAGATGTCAAGAGATGGAGCAGGAAG 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CCACTTTAAAGGAGGTTGAAGAAACTCTGGCTAAAAGATGTCAAGAGATGGAGCAGGAAG 1253
Query 1251 CCAAGGACCAAGCGACAGACAACGCCATCCTTGACCAGATTCGAAAGATGGTTGAAGTAG 1310
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1254 CCAAGGAGCAAGCGACAGACAACGCCATCCTTGAGCAGATTCGAAAGATGGTTGAAGTAG 1313
Query 1311 AGATTCCTCAATCTTTATTTGAGGAACAAGGAAGACAGTTTTATGGAGCAAGGCTTCTAG 1370
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 AGATTCCTCAATCTTTATTTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAG 1373
Query 1371 AGATTCAGGCAAGTGGAAACATGAAGCTCACCGAAGACCAATTGGCTTCTCTTTCAAGTC 1430
||||||||| | |||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 1374 AGATTCAGG---G---AAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTC 1427
Query 1431 AAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAAAGCATTACCAACATAATCAAGC 1490
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1428 AAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAGAGCATCACCAACATAATCAAGC 1487
Query 1491 AGAATTTAGCTGTCGGAGATATCTTCAAGCGCGAAAACTTAGAGTTCTCAACAGATGAAC 1550
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AGAATATAGCTGTTGGAGATATCTTCAAGCGCGAAAACTTAGAGTTCTCAACAGATGAAC 1547
Query 1551 TCGTTAAAGAGGTCGAGAACTCGATCTCAGAATTCAAGAAACATAAACAAGAGTAT-GAC 1609
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1548 TAGTTAAAGAGGTCGAAAACTCGATCTCAGAATTCAAGAAACATAAACAAGAGT-TCGAC 1606
Query 1610 GAAGAGCGTGTGAAAGATCAGGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGG 1669
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GAGGAGCGTGTGAAAGATCAGGTACAAGAGATTTTAGAAGGAGCAAAAGTGCTTGAATGG 1666
Query 1670 TTGAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATA--GGTAATGTATG 1727
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1667 TTAAAAGACCGAGCCGAGATTCAATACATCACTCGTTGATTAGCATATAGGTAATGTATG 1726
Query 1728 TATGATT 1734
|||||||
Sbjct 1727 TATGATT 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5