BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495609
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55240.1 | Symbols: ATPXG2 | ARABIDOPSIS THALIANA PEROXYGENA... 1133 0.0
AT4G26740.1 | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:... 549 1e-155
> AT5G55240.1 | Symbols: ATPXG2 | ARABIDOPSIS THALIANA PEROXYGENASE
2 | chr5:22405926-22407351 FORWARD LENGTH=962
Length=962
Score = 1133 bits (613), Expect = 0.0
Identities = 695/736 (94%), Gaps = 0/736 (0%)
Strand=Plus/Plus
Query 2 AATGACGACGATGGAGAGGATGGAGTGAGACGCAATGGAGACAGTGGCTCCCTACGCTCC 61
||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 37 AATGACGTCGATGGAGAGGATGGAGAGAGACGCAATGGAGACGGTGGCTCCATACGCTCG 96
Query 62 GGTGACTTATCACCGCCGTGTTCGTGGTAACTTGGACGACACACTTCCTAAACCTTATTT 121
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 97 GGTGACTTATCACCGCCGTGTTCGTGGTGACTTGGATGACACACTTCCTAAACCTTATTT 156
Query 122 GCCGAGAGCACTTCAAGCACCTGACATGGAGCACCCGCAAGGAACACCAGAGCATAGGCA 181
|||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 157 GCCGAGAGCACTACAAGCACCTGACATGGAACACCCACAAGGAACACCAGATCATAGACA 216
Query 182 TAATGGCCTAAGTGTTCTTCAGCAACATGTCGCTTTCTTTGATTTGGATGATAATGGCAT 241
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 217 TAATGGCCTTAGTGTTCTTCAGCAACATGTCGCTTTCTTCGATTTGGACAATAATGGCAT 276
Query 242 TATTTATCCCTTTGAAACCTTCACTGGATTCCGGTTACTTGGTTTCAATTTACTAGCGTC 301
||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||
Sbjct 277 CATTTATCCCTTTGAAACCTTCTCTGGGTTCCGGTTACTCGGTTTCAATTTACTCGCGTC 336
Query 302 GCTTGTCTTGGCTGCTGGTATCAACATAGCTCTTAGCTATGCTACTCTCCCGGGATGGTT 361
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GCTTATCTTGGCTGCTGGTATCAACATAGCTCTTAGCTATGCTACTCTCCCGGGATGGTT 396
Query 362 ACCGTCTCCGTTATTTCCTATATATATACACAACATTCACAAGGCAAAACACGGAAGTGA 421
|||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 397 ACCGTCTCCGTTCTTCCCTATATATATTCACAACATTCACAAGGCAAAGCACGGAAGCGA 456
Query 422 CTCTAAAACGTATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAG 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 CTCTAAAACATATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAG 516
Query 482 CAAATACGCGAGGACCGTGTCAGACAAGTTGAGTCTTGGAGAACTATGGGACATGACCGA 541
|||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 517 CAAATACGCGAGGACCATACCAGACAAGTTGAGTCTTGGAGAGCTATGGGACATGACCGA 576
Query 542 AGGGAACCGCGATGCCTTTGACTTTTTTGGATGGTTAGCGAGCAAGGTGGAATGGGGAGT 601
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 577 AGGAAACCGCGATGCCTTTGACTTTTTTGGATGGTTAGCGAGCAAAGTGGAATGGGGTGT 636
Query 602 GTTGTATGCGTTAGCGAGTGACGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTG 661
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 637 ATTGTATGCATTAGCGAGTGATGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTG 696
Query 662 CTTAGATGGAAGCTTGTTCGAGTATTGTGCGAAGAACTACGCTGAGATCAAGGAGTACAA 721
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 697 CTTCGATGGGAGCTTGTTCGAGTATTGTGCCAAGAACTACGCTGAGATCAAGGAGTACAA 756
Query 722 GACGTACTACTGATCA 737
||||||||||||||||
Sbjct 757 GACGTACTACTGATCA 772
> AT4G26740.1 | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:13473516-13475328
REVERSE LENGTH=1063
Length=1063
Score = 549 bits (297), Expect = 1e-155
Identities = 595/736 (81%), Gaps = 31/736 (4%)
Strand=Plus/Plus
Query 14 GGAGAGGATGGAGTGAGACGCAATGGAGACAGTGGCTCCCTACGCTCCGGTGACTTATCA 73
||||| ||||||| |||||||||||| || ||||||||||| || ||||| ||||| ||
Sbjct 65 GGAGATGATGGAGAGAGACGCAATGGCTACGGTGGCTCCCTATGCGCCGGTCACTTACCA 124
Query 74 CCGCCGTGTTCGTGGTAACTTGGACGACACACTTCCTAAACCTTATTTGCCGAGAGCACT 133
||||||| ||||| | ||||||| || | |||||||||||||||| |||| |||||| |
Sbjct 125 TCGCCGTGCTCGTGTTGACTTGGATGATAGACTTCCTAAACCTTATATGCCAAGAGCA-T 183
Query 134 T-CAAGCACCTGACATG-GAGCACCCGCAAGGAACACCAGAG-CATAGGCATAATGGCCT 190
| |||||||| |||| | || |||||| | ||||| |||| | |||| | || | || ||
Sbjct 184 TGCAAGCACCAGACA-GAGAACACCCGTACGGAACTCCAG-GCCATAAGAATTACGGACT 241
Query 191 AAGTGTTCTTCAGCAACATGTCGCTTTCTTTGATTTGGATGATAATGGCATTATTTATCC 250
||||||||||| || |||||| | ||||| ||| | |||||||||||||| ||||| ||
Sbjct 242 TAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATCGATGATAATGGCATCATTTA-CC 300
Query 251 CTT-TGAAACCTTCACTGGATTCCGGTTACTTGGTTTCAAT-TTACTAGCGTCGCTTGTC 308
||| || |||| | ||||| | || | |||||||||||| | | | | ||||||| |
Sbjct 301 CTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCA-TTGGGTCGCTTATA 359
Query 309 TTGGCTGCTGGTATCAACATAG-CTCTTAGCTATGCTACTCTCCCGGGATGGTTACCGTC 367
| || |||| ||||||| | | | ||||||||||| ||||| ||||| |||||||| ||
Sbjct 360 ATAGCCGCTGTTATCAACCT-GACCCTTAGCTATGCCACTCTTCCGGGGTGGTTACCTTC 418
Query 368 TCCGTTATTTCCTATATATATACACAACATTCACAAGGCAAAACACGGAAGTGACTCTAA 427
|| || || |||||||| ||||||||||| |||||| |||| || |||||||| || ||
Sbjct 419 ACCTTTCTTCCCTATATACATACACAACATACACAAGTCAAAGCATGGAAGTGATTCAAA 478
Query 428 AACGTATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAGCAAATA 487
||| ||||||||||||||||||| || || | ||||||||||||||| |||||||||||
Sbjct 479 AACATATGACAATGAAGGAAGGTTTATGCCGGTGAATCTTGAGTTGATATTTAGCAAATA 538
Query 488 CGCGAGGACCGTGTCAGACAAGTTGAGTCTTGGAGAACTATGGGACATGACCGAAGGGAA 547
|||| ||| || ||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 539 TGCGAAAACCTTGCCAGACAAGTTGAGTCTTGGAGAACTATGGGAGATGACAGAAGGAAA 598
Query 548 CCGCGATGCCTTTG-ACTTTTTTGGATGGTTAGCGAG-CAAGGTGGAATGGGGAGTGTTG 605
||| || || || | || ||||||||||| | || || ||| | || |||||| |||||
Sbjct 599 CCGTGACGC-TTGGGACATTTTTGGATGGATCGC-AGGCAAAATAGAGTGGGGACTGTTG 656
Query 606 TA-T-GCGTTAGCGAGTGACGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTGCT 663
|| | || | ||| || || |||||||| || ||||| |||||||| || |||||||| |
Sbjct 657 TACTTGC-T-AGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCTATTAGGCGGTGTT 714
Query 664 TAGATGGAAGCTTGTTCGAGTATTGTGCGAAGAA-CTACGCTGAG-ATCAAG-GA-GTAC 719
| |||||||||||||||||||| ||||| || || |||||||| | |||| | || | ||
Sbjct 715 TCGATGGAAGCTTGTTCGAGTACTGTGCCAA-AATCTACGCTG-GTATCA-GTGAAG-AC 770
Query 720 AAGAC-G--TACTACT 732
||||| | |||||||
Sbjct 771 AAGACAGCATACTACT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5