BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495612
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55260.1 | Symbols: PPX2, PPX-2 | protein phosphatase X 2 | ... 1716 0.0
AT4G26720.1 | Symbols: PPX1, PPX-1 | protein phosphatase X 1 | ... 1013 0.0
> AT5G55260.1 | Symbols: PPX2, PPX-2 | protein phosphatase X 2
| chr5:22416599-22418864 FORWARD LENGTH=1370
Length=1370
Score = 1716 bits (929), Expect = 0.0
Identities = 1053/1110 (95%), Gaps = 19/1110 (2%)
Strand=Plus/Plus
Query 69 CTTCGTGAATTTTGCGTCTGATTATCGAAATTAGGGTTTTTATT-TTCTTTCCATTAGTT 127
|||||| ||||||||||||||||||| |||||| ||||||| || || ||||||||||||
Sbjct 116 CTTCGTAAATTTTGCGTCTGATTATC-AAATTA-GGTTTTTTTTGTTGTTTCCATTAGTT 173
Query 128 GTCTGTGA-AGAAAGGTGGAAGAAGaaa--aa-a-aaGAAAATGTCAGACATAGACCAGC 182
||| | | | || |||| ||||| || | | ||||||||||||| ||||| |||
Sbjct 174 GTC--TCATTG-TCTGT-GAAG-AGAAAGGAACAGAGGAAAATGTCAGACCTAGACAAGC 228
Query 183 AAATAGAGCAGCTAAAACGCTGCGAGCCTTTGAAGGAATCAGAAGTGAAAGCTCTTTGTC 242
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 229 AAATAGAGCAGCTTAAACGCTGCGAGGCTTTGAAGGAATCAGAAGTGAAGGCTCTTTGTC 288
Query 243 TCAAAGCCATGGAAATTCTAGTTGAAGAGAGCAATGTTCAAAGAGTCGATGCTCCTGTCA 302
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTAAAGCTATGGAGATTCTAGTTGAAGAGAGCAATGTTCAAAGAGTCGATGCTCCTGTCA 348
Query 303 CTATATGTGGCGACATTCATGGGCAGTTCTATGACATGAAAGAGCTTTTCAAAGTCGGCG 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 349 CTATATGTGGCGACATTCATGGACAGTTCTATGACATGAAAGAGCTTTTCAAAGTTGGGG 408
Query 363 GTGATTGCCCTAAGA-CAAGTTATTTGTTTCTTGGAGATTTTGTTGACCGAGGTTTTTAT 421
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTGATTGCCCTAAGACCAA-TTATTTGTTTCTTGGAGATTTTGTTGACCGAGGTTTTTAT 467
Query 422 TCAGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGGTTAGATATCCAGACCGTATAACT 481
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCGGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGGTTAGATATCCAGACCGTATAACT 527
Query 482 CTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGCAGGTATATGGTTTTTATGATGAG 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 CTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGCAGGTATATGGATTTTATGATGAG 587
Query 542 TGCCTACGTAAATATGGCTCTGTAAATGTTTGGAGATATTGCACAGATATCTTTGACTAC 601
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 588 TGTCTGCGTAAATATGGCTCTGTAAATGTTTGGAGATACTGCACAGATATCTTTGACTAC 647
Query 602 TTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTTTGTGTTCATGGAGGTCTCTCTCCA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTTTGTGTTCATGGAGGTCTCTCTCCA 707
Query 662 GCTATTATGACTCTAGACCAGATCAGGGCTATTGATCGAAAGCAAGAAGTACCACATGAT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GCTATTATGACTCTAGACCAGATCAGGGCTATTGATCGAAAGCAAGAAGTACCACATGAT 767
Query 722 GGTGCCATGTGTGATCTTTTATGGTCTGATCCAGAAGATATTGTCGATGGCTGGGGATTG 781
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 GGTGCTATGTGTGATCTTTTATGGTCTGATCCAGAAGATATTGTCGATGGTTGGGGATTG 827
Query 782 AGTCCACGTGGTGCCGGATTCCTTTTCGGTGGCAGTGTTGTTACGTCTTTTAACCACTCA 841
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 828 AGTCCCCGTGGTGCCGGATTCCTTTTCGGCGGCAGTGTTGTTACGTCTTTTAACCACTCA 887
Query 842 AACAACATTGATTACATATGTCGAGCTCATCAGCTAGTTATGGAAGGTTACAAATGGATG 901
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 888 AACAACATTGATTACATATGTCGAGCTCATCAGCTAGTGATGGAAGGTTACAAATGGATG 947
Query 902 TTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCCAAATTACTGTTATAGATGCGGTAAT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCCAAATTACTGTTATAGATGCGGTAAT 1007
Query 962 GTTGCTGCAATTCTAGAGCTCGATGAGAATCTAAATAAGGAGTTTCGTGTCTTCGATGCA 1021
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1008 GTAGCTGCAATTCTAGAGCTCGATGAGAATCTAAACAAAGAGTTTCGTGTCTTCGATGCA 1067
Query 1022 GCCCCACAAGAATCGAGAGGAGCTCTAGCCAAGAAACCTGCACCTGATTATTTCCTGTGA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GCCCCACAAGAATCGAGAGGAGCTCTAGCCAAGAAACCTGCACCTGATTATTTCCTGTGA 1127
Query 1082 GACGCAAAACAGTGAAAACAGAAATTGGTTCTTTCTTCTCATTGCAGAGCACGAAAACTA 1141
||||||| ||||| ||||||| |||||| ||||||||||||||||||| |||| |||
Sbjct 1128 GACGCAA----GTGAATACAGAAACTGGTTCCTTCTTCTCATTGCAGAGCAAGAAAGCTA 1183
Query 1142 CCCAAAATCATCGGTGTATAGGTTGTAAAA 1171
||||||||||||||||||||||||||||||
Sbjct 1184 CCCAAAATCATCGGTGTATAGGTTGTAAAA 1213
Score = 119 bits (64), Expect = 7e-26
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 1 GGGGAGAAAACACCCCTTCGGAGAGGAGCAAAGCCTCTCCTGGGGAAGAAGAAGAA---C 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 13 GGGGAGAAAACACCCCTTCGGAGAGGAGCAAAGCCTCTCCTGGGGAAGAAGAAGAAGAAC 72
Query 58 ACGACTTTTTGCTTC 72
|||||||||||||||
Sbjct 73 ACGACTTTTTGCTTC 87
> AT4G26720.1 | Symbols: PPX1, PPX-1 | protein phosphatase X 1
| chr4:13470032-13472342 REVERSE LENGTH=1471
Length=1471
Score = 1013 bits (548), Expect = 0.0
Identities = 801/924 (87%), Gaps = 14/924 (2%)
Strand=Plus/Plus
Query 161 AAAATGTCAGACATAGACCAGCAAATAGAGCAGCTAAAACGCTGCGAGCCTTTGAAG-GA 219
|||||||||||| |||| | |||||||| |||||| || || ||||| || ||| || ||
Sbjct 186 AAAATGTCAGACCTAGATCGGCAAATAGGGCAGCTTAAGCGATGCGAACCATTG-AGCGA 244
Query 220 ATCAGAAGTGAAAGCTCTTTGTCTCAAAGCCATGGAAATTCTAGTTGAAGAGAGCAATGT 279
||| || ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 245 ATCGGAGGTGAAGGCTCTTTGCCTCAAAGCCATGGAAATTCTTGTTGAAGAGAGTAATGT 304
Query 280 TCAAAGAGTCGATGCTCCTGTCACTATATGTGGCGACATTCATGGGCAGTTCTATGACAT 339
||| ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||| ||
Sbjct 305 TCAGAGAGTTGATGCCCCTGTCACTTTATGTGGTGACATCCATGGGCAGTTCTATGATAT 364
Query 340 GAAAGAGCTTTTCAAAGTCGGCGGTGATTGCCCTAAGA-CAAGTTATTTGTTTCTTGGAG 398
|| |||||||||||||| || |||||||| ||||||| ||| ||||||||| | ||||
Sbjct 365 GATGGAGCTTTTCAAAGTTGGGGGTGATTGTCCTAAGACCAA-CTATTTGTTTATGGGAG 423
Query 399 ATTTTGTTGACCGAGGTTTTTATTCAGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGG 458
|||||||||| || || | |||||| |||||||||||||||||||| || || |||||||
Sbjct 424 ATTTTGTTGATCGTGGATATTATTCGGTTGAGACATTTCTACTTCTACTCGCACTCAAGG 483
Query 459 TTAGATATCCAGACCGTATAACTCTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGC 518
|||||||||||||||| ||||||||||| ||||| ||||| || ||| |||| || || |
Sbjct 484 TTAGATATCCAGACCGCATAACTCTCATCAGAGGAAACCATGAAAGCAGGCAAATCACAC 543
Query 519 AGGTATATGGTTTTTATGATGAGTGCCTACGTAAATATGGCTCTGT-AAATGTTTGGAGA 577
|||| ||||| |||||||||||||| | ||||||||||||||| | |||||| ||||||
Sbjct 544 AGGTTTATGGATTTTATGATGAGTGTTTGCGTAAATATGGCTCT-TCAAATGTCTGGAGA 602
Query 578 TATTGCACAGATATCTTTGACTACTTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTT 637
|| ||||| || || ||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 603 TACTGCACCGACATTTTTGACTACATGAGTCTTTCAGCTGTTGTGGAGAACAAGATATTC 662
Query 638 TGTGTTCATGGAGGTCTCTCTCCAGCTATTATGACTCTAGACCAGATCAGGGCTATTGAT 697
||||||||||| ||||| |||||||||||||||||||| || ||||| ||| | |||||
Sbjct 663 TGTGTTCATGGTGGTCTTTCTCCAGCTATTATGACTCTTGATCAGATTAGGACAATTGAC 722
Query 698 CGAAAGCAAGAAGTACCACATGATGGTGCCATGTGTGATCTTTTATGGTCTGATCCAGAA 757
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 723 CGGAAGCAAGAAGTACCACATGATGGTGCCATGTGTGATCTCCTATGGTCTGATCCTGAA 782
Query 758 GATATTGTCGATGGCTGGGGATTGAGTCCACGTGGTGCCGGATTCCTTTTCGGTGGCAGT 817
|||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 783 GATATTGTTGATGGCTGGGGATTGAGCCCTCGTGGTGCCGGATTCCTTTTTGGTGGCAGT 842
Query 818 GTTGTTACGTCTTTTAACCACTCAAACAACATTGATTACATATGTC-GAGCTCATCAGCT 876
||||| |||||||||||||||||||||||||| || |||||| | | | || ||||| ||
Sbjct 843 GTTGTCACGTCTTTTAACCACTCAAACAACATAGACTACATA-GCCCGTGCCCATCAACT 901
Query 877 AGTTATGGAAGGTTACAAATGGATGTTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCC 936
||||||||| ||||||||||||||||| |||||||||| || || || ||||| |||||
Sbjct 902 AGTTATGGAGGGTTACAAATGGATGTTTGATAGCCAGATTGTGACAGTGTGGTCAGCCCC 961
Query 937 AAATTACTGTTATAGATGCGGTAATGTTGCTGCAATTCTAGAGCTCGATGAGAATCTAAA 996
|||||||||||| |||||||||||||| ||| ||||||||||||| || |||||||||||
Sbjct 962 AAATTACTGTTACAGATGCGGTAATGTGGCTTCAATTCTAGAGCTTGACGAGAATCTAAA 1021
Query 997 TAAGGAGTTTCGTGTCTTCGATGCAGCCCCA-CAAGAATCGAGAGGAGC-TCTAGCCAAG 1054
||| || || ||||| || |||||||||| | || || |||||||| || || |||||
Sbjct 1022 TAAAGAATTCCGTGTGTTTGATGCAGCCC-AGCAGGACTCGAGAGG-GCCTCCCGCCAA- 1078
Query 1055 AAA-CCTGCACCTGATTATTTCCT 1077
||| || || |||||||| |||||
Sbjct 1079 AAAGCCGGCCCCTGATTACTTCCT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5