BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495615
Length=3036
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha | ... 4268 0.0
AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 bet... 1303 0.0
> AT5G55300.2 | Symbols: TOP1ALPHA | DNA topoisomerase I alpha
| chr5:22424577-22429502 REVERSE LENGTH=3077
Length=3077
Score = 4268 bits (2311), Expect = 0.0
Identities = 2640/2795 (94%), Gaps = 38/2795 (1%)
Strand=Plus/Plus
Query 1 AGAAGTTGGTCTGAGCCTTTATCATCGTTGTTCTTTCGGGTATGGGCACTGAAACTGTTT 60
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||
Sbjct 111 AGAAGTTGGTCTGAGCCTTCATCAACGTTGTTCTTTCGGGAATGGGCACTGAAACAGTTT 170
Query 61 CGAAACCTGTGATGGATAATGGGTGTGAAGACAGTGATGATGACAAGCCTGTAGTGTTCA 120
| |||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||
Sbjct 171 CAAAACCTGTGATGGATAATGGGTCTGGAGACAGTGATGATGACAAGCCTTTAGCGTTCA 230
Query 121 AGAGG-AGAAGTACTGTTGCTTCTAATTCGAATCAATCTAAATCCAATCCCCAGAGAAGC 179
||||| | || ||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 231 AGAGGAATAA-TACAGTGGCTTCTAATTCGAATCAATCTAAATCCAATTCCCAGAGAAGC 289
Query 180 AAGGCAGTCCCTACCACAAAGGAATCACCTATGAGATCCCCTGTGACTAGCCCAAATGGA 239
|||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 290 AAGGCAGTTCCTACCACCAAGGTATCACCTATGAGATCACCTGTGACTAGCCCAAATGGA 349
Query 240 ACCACTCCTTCGAATAGAACTTCTACAGTGAAATCCTCTGTGCCATCATCTTCTGCTAAG 299
|||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 350 ACCACTCCTTCGAATAAAACTTCTATAGTGAAATCCTCTATGCCATCATCTTCTTCTAAG 409
Query 300 GCTTCACCAGCAAAGTCACCATTGCGGAATGATACGCTCTCTACCGTTAAGGATAGGAGC 359
|||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 410 GCTTCACCAGCAAAGTCACCATTGCGGAATGATATGCCCTCTACTGTTAAGGATAGGAGC 469
Query 360 CAGTTACATAAAGATCAGTCTAAATGTAAAATTGAACATGAGGATTCTGAGGATGATAGA 419
|||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 470 CAGTTACAGAAAGATCAGTCTGAATGTAAAATTGAGCATGAGGATTCTGAGGATGATAGA 529
Query 420 CCATTAAGTTCCATACTATCTGGAAATTCCAATCGGCAAAATAAAGGGCCAACCTCTTCG 479
|| ||||||||| | || || | | | | || ||||||||||||||||||||||
Sbjct 530 CCTTTAAGTTCC--A-TA-CT----A-T-C--T-GG--AAATAAAGGGCCAACCTCTTCG 574
Query 480 CGGCAGGTGTCTTCACCGCAGCCAGaaaaaaaGAATAATGGTGATCGACCTCTTGATAGA 539
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 575 CGGCAGGTTTCTTCACCGCAGCCAGAGAAAAAGAATAATGGTGATCGACCTCTTGATAGA 634
Query 540 GCAAACCGAATCATAAAAGATGAGTCAGATGATGAAACTCCAATCTCGTTAATGTTTCGG 599
|||| | |||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 635 GCAAGCAGAATTATAAAAGACGAGTCAGATGATGAAACTCCAATCTCGTCAATGTTTCGG 694
Query 600 AAAAAGATTGATAGTGGGATGTCAGGGGGCAAACAGATCTCCAATGATGAAAATAAACCT 659
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 695 AAGAAGATTGATAGTGGGATGTCAGGGGGCAACCAGCTCTCCAATGATGAAAAGAAACCT 754
Query 660 TTGGCTAAAAAGTTGCATCAGAATGGTTCCGCACTTAAAAATGAAGTACCGAACT-GTAA 718
|||| | ||||||||||||||||||||||| || |||| |||||||| ||||| | ||||
Sbjct 755 TTGGTTCAAAAGTTGCATCAGAATGGTTCCACAGTTAAGAATGAAGTGCCGAA-TGGTAA 813
Query 719 GGTATTAGGTAAGAGACC-CGTGGAGAAGAATAGTTCTGCAGATCAATCTTCCTTGAAGA 777
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 814 GGTATTAGGTAAGAGACCTC-TGGAGAAGAATAGTTCTGCAGATCAATCTTCCTTGAAGA 872
Query 778 AGGTCAAGCTATCAGCTTCACCTACTTCAGTGAAAATGAAACAAGATTCTGTCAAAAAAG 837
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 873 AGGCCAAAATATCAGCTTCACCTACTTCAGTGAAAATGAAACAAGATTCTGTCAAGAAAG 932
Query 838 AG-TCAGATGATAAGGGAAGGGTTTTGGGTTCCCCAAAACCATTGAAAGCTAAAAAGTTA 896
|| | ||||||||||||||||||||||| ||| |||||| | ||||||||||| |||||
Sbjct 933 AGAT-AGATGATAAGGGAAGGGTTTTGGTTTCACCAAAA--A-TGAAAGCTAAACAGTTA 988
Query 897 TCTACCAGAGAAGATGGAAC------tgatgatgatgatgatgTTCCGATATCCAAGAGA 950
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 989 TCTACCAGAGAAGATGGAACTGATGATGATGATGATGATGATGTTCCGATATCCAAGAGA 1048
Query 951 TTCAAATCAGATTCCTCCAACAGTAAAACATCATCTGCAAAACCTAAGGCAGTAAAACAA 1010
|||||||||||||||||||||||||| |||||||||||||| || || |||||||||| |
Sbjct 1049 TTCAAATCAGATTCCTCCAACAGTAACACATCATCTGCAAAGCCAAAAGCAGTAAAACTA 1108
Query 1011 AACTCTACTTCATCAGCTGCAAAGCCAAAAGTGACAAATGTCGTTTCTCCTCGGTCCAGA 1070
|| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 1109 AATTCTACTTCATCAGCTGCAAAGCCAAAAGCGAGAAATGTCGTTTCTCCTAGGTCCAGA 1168
Query 1071 ACAACGAACAAAAACTCTAAGAAAGTAACAAAGGACTCAAAATATTCCGCGTCTTCGAAA 1130
||| || ||||||| ||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 1169 GCAATGACCAAAAACACTAAGAAAGTAACGAAGGACTCAAAATATTCCACGTCTTCAAAA 1228
Query 1131 TCGTCACCTTCATCTGGAGATGGGCAGAAGAAATGGACTACCTTGGTGCACAACGGTGTA 1190
|| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1229 TCATCACCTTCCTCTGGAGATGGGCAAAAGAAATGGACTACTTTGGTGCACAACGGTGTA 1288
Query 1191 ATATTTCCACCACCTTACAAGCCTCACGGCATTAAGATTTTGTACAAGGGGAAGCCTGTT 1250
||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1289 ATATTTCCACCGCCATACAAGCCTCATGGCATTAAGATTTTGTACAAGGGGAAACCTGTT 1348
Query 1251 GACCTAACTACTGAACAAGAAGAGGTTGCGACTATGTTTGCAGTAATGAGAGAGACGGAT 1310
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1349 GACCTAACTATTGAACAAGAAGAGGTTGCGACTATGTTTGCAGTGATGAGAGAGACAGAT 1408
Query 1311 TATTATAATAAACCTCAATTTAGGGAGAATTTCTGGAATGACTGGCG-AGCACTGCTTGG 1369
||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1409 TATTATACTAAACCTCAATTTCGGGAGAATTTCTGGAATGACTGGCGAAG-ACTGCTTGG 1467
Query 1370 CAGGAAACATGTGATACAGAAGTTGGATGATTGTGACTTTACTCCCATATATGAGTGGCA 1429
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 CAAGAAACATGTGATACAGAAGTTGGATGATTGTGACTTTACTCCCATATATGAGTGGCA 1527
Query 1430 TTTGgaagagaaagagaagaagaaacaaatgagcacagaggagaaaaaagctttgaaaga 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 TTTGGAAGAGAAAGAGAAGAAGAAACAAATGAGCACAGAGGAGAAAAAAGCTTTGAAAGA 1587
Query 1490 ggagaaactgaagCAAGAGGAGAAATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAA 1549
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 GGAGAAAATGAAGCAAGAGGAGAAATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAA 1647
Query 1550 GATTGGTAATTTCAGAGTTGAACCGCCTGGGCTTTTCAGAGGCCGTGGAGAACATCCCAA 1609
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1648 GATTGGTAATTTCAGAGTGGAACCGCCTGGCCTTTTCAGAGGCCGTGGAGAACATCCCAA 1707
Query 1610 GATGGGAAAACTAAAGAAGCGTATCCGTCCATGCGAGATCACCTTAAATATCGGGAAAGG 1669
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1708 GATGGGAAAACTAAAGAAGCGTATCCATCCATGCGAGATCACCTTAAATATCGGGAAAGG 1767
Query 1670 TGCTCCTATTCCAGAATGTCCAATCGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAA 1729
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1768 TGCTCCTATTCCAGAATGTCCAATTGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAA 1827
Query 1730 CACAGTTACCTGGCTAGCTTTCTGGGTTGATCCTATTAA-CCAGAAAGAATTCAAGTATG 1788
|||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 1828 CACAGTCACCTGGCTAGCTTTCTGGGCTGATCCTATTAACCCA-AAAGAATTCAAGTATG 1886
Query 1789 TATTTTTGGCACCTAGCAGTGCTATGAAAGGGCTGAGCGACAAAGAGAAGTACGAGAAAG 1848
||||||||| | || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1887 TATTTTTGGGAGCTGGCAGTTCTCTGAAAGGGCTGAGCGACAAAGAGAAGTACGAGAAAG 1946
Query 1849 CTAGGAATCTTACGGACCATATAGATAATATAAGGACAACATACACCAAGAATTTTACCG 1908
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1947 CTAGGAATCTTACGGATCATATAGATAATATAAGAACAACATACACCAAGAATTTTACTG 2006
Query 1909 CCAAGGATGTTACAACGAAGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGC 1968
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 CCAAGGATGTTAAAATGAGGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGC 2066
Query 1969 TTAGGGCTGGAAATGAGAAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAA 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 TTAGGGCTGGAAATGAGAAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAA 2126
Query 2029 AAGTTGGAAATGTGGAGTGTATTCCTCCAAATAAAATAAAGTTTGACTTTCTTGGTAAGG 2088
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2127 AAGTTGGAAATGTGGAGTGTATTCCTCCAAATAAAATAAAGTTTGATTTTCTTGGTAAGG 2186
Query 2089 ATTCAATCCAGTATGTGAACACAGTTGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGAC 2148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2187 ATTCAATCCAGTATGTGAACACAGTCGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGAC 2246
Query 2149 AGTTCCAGGCGGGAAAATCCAAAACAGATGATCTTTTTGATGAGTTGGACACAAGTAAAC 2208
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2247 AGTTCCAGGCGGGAAAATCCAAAACAGATGATCTTTTTGATGAGTTAGACACAAGTAAAC 2306
Query 2209 TGAATGCTCATCTGAAGGAACTTGTGCCTGGTCTCACAGCCAAAGTATTCCGTACATATA 2268
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2307 TGAATGCTCATTTGAAGGAACTTGTGCCTGGTCTCACAGCTAAAGTATTCCGTACATATA 2366
Query 2269 ATGCTTCCATCACTTTGGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGAT-TTAAAT 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 2367 ATGCTTCCATCACTTTGGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGATGTT-ACT 2425
Query 2328 CAGAAAATAGTAGTTTATCAGAAAGCAAACAAGGAGGTTGCCATAATCTGTAATCATCAG 2387
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2426 CAAAAAATAGTAGTTTATCAGAAAGCAAATAAGGAGGTTGCCATAATCTGCAATCATCAG 2485
Query 2388 CGTACTGTATCAAAGTCACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAA 2447
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2486 CGTACTGTATCAAAGACACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAA 2545
Query 2448 CTCAAGGAGGGTCTTAAAGAGCTCAAAACTAATCTTGACCGGGCTAAAAAGGGAAAACCA 2507
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 CTCAAGGAGGTTCTTAAAGAGCTCAAAACTAATCTTGACCGGGCTAAAAAGGGAAAACCA 2605
Query 2508 CCATTGGAAGGTTCTGATGGAAAGAAGATTAGAAGCTTAGAACCAAACGCGTGGGAGAAG 2567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2606 CCATTGGAAGGTTCTGATGGAAAGAAGATTAGAAGCTTAGAACCAAACGCGTGGGAGAAG 2665
Query 2568 AAGATTGCTCAACAGAGTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAAGAG 2627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 AAGATTGCTCAACAGAGTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAAGAG 2725
Query 2628 GACTTGAAAACCGTGGCACTAGGCACATCTAAGATCAATTACCTGGATCCTAGAATCACG 2687
||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 2726 GACTTGAAAACAGTGGCACTGGGCACGTCTAAGATCAACTACCTGGATCCTAGAATCACA 2785
Query 2688 GTTGCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCTTTTG 2747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2786 GTTGCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCTTTTG 2845
Query 2748 GAGAAATTTGCGTGGGCAATGGATGTAGAACCCGA 2782
||||| |||||||||||||||||||||||||||||
Sbjct 2846 GAGAAGTTTGCGTGGGCAATGGATGTAGAACCCGA 2880
Score = 182 bits (98), Expect = 2e-44
Identities = 157/182 (86%), Gaps = 17/182 (9%)
Strand=Plus/Plus
Query 2868 AGCAAAGAGAAAACCGGCCTTTCTTCTATTCATCTTCCTCCTTTGTTTAGAACCTT-TTA 2926
||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 2881 AGCAAAGAGAAAACCGGCCTTTCTTCTATTCATCTTCCTCCCTTGTTTAGAATTTTATTA 2940
Query 2927 CCGTAGTGAGTaaaaaa-a--aa--T-TCAAGCTGTTTCATTAGTGTTATTTTTTAACAT 2980
|| |||||||||||||| | || | |||||||||||||||||||| |||||||||||
Sbjct 2941 CCTTAGTGAGTAAAAAACATGAACATGTCAAGCTGTTTCATTAGTGTC-TTTTTTAACAT 2999
Query 2981 TATTACTATGACTAAAATGCTATGTTATTTTT--CA---C-ATGATTAAAGAAATAGAAA 3034
|| |||||||| ||||| |||||||||| | || | |||||||||||||||||||
Sbjct 3000 TA---CTATGACTCAAATGTTATGTTATTTGTAACATTACTATGATTAAAGAAATAGAAA 3056
Query 3035 AT 3036
||
Sbjct 3057 AT 3058
> AT5G55310.1 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta
| chr5:22430176-22435076 REVERSE LENGTH=3068
Length=3068
Score = 1303 bits (705), Expect = 0.0
Identities = 1402/1731 (81%), Gaps = 78/1731 (5%)
Strand=Plus/Plus
Query 1100 AAAGGACTCAAAATATTCCG-CGTCTTCGAAATCGTCACCTTCATCTGGAGATGGGCAGA 1158
||| || || ||||||| || ||||| ||||| | ||| | |||||||||||||| |
Sbjct 1146 AAA-GATTCTAAATATT-CGAAATCTTCTAAATCATTACC-T--TCTGGAGATGGGCAAA 1200
Query 1159 AGAAATGGACTACCT-TGGTGCACAACGGTGTAATATTTCCACCACCTTACAAGCCTCAC 1217
||||||||| | || | |||||| ||||| || |||||||| || || |||| |||
Sbjct 1201 AGAAATGGA-AAACTCTACAGCACAATGGTGTTATTTTTCCACCTCCATATAAGCGTCAT 1259
Query 1218 GGCATTAAGATTTTGTACAAGGGGAAGCCTGTTGACCTAACTACTGAACAAGAAGAGGTT 1277
|| ||||||| |||| | |||| |||||||||||| ||||| |||||||||||||||||
Sbjct 1260 GGGGTTAAGATATTGTTCCAGGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTT 1319
Query 1278 GCGACTATGTTTGCAGTAATGAGAGAGACGGATTATTATAATAAACCTCAA-TTTAGGGA 1336
|| ||||||||||| || ||||| || || || |||||||| ||||| || || || ||
Sbjct 1320 GCAACTATGTTTGCGGTGATGAGGGAAACAGAATATTATAAAAAACC-AAAGTTCAGAGA 1378
Query 1337 GAATTTCTGGAATGACTGGC-GAGCACTGCTTGGCAGGAAACATGTGA-TACAGAAG-TT 1393
||||||||||||||| |||| || ||| ||||| | ||| ||| ||| || | ||| ||
Sbjct 1379 GAATTTCTGGAATGATTGGCGGA-AACTACTTGGAAAGAACCATATGATTA-A-AAGTTT 1435
Query 1394 GGATGATTGTGACTTTACTCCCATATATGAGTGGCATTTGgaagagaaagaga-agaaga 1452
|||||||||||||| |||||||||||||| ||| || || | ||||| |||| | ||||
Sbjct 1436 AGATGATTGTGACTTCACTCCCATATATGAATGGTATATGCAGGAGAAGGAGACA-AAGA 1494
Query 1453 aacaaatgagc-acagaggagaaaaaagctt-tgaaagaggagaaactgaagCAAGAGGA 1510
||||||||| | |||| ||| |||| | || |||||||||||||| | ||||| |||||
Sbjct 1495 AACAAATGA-CTGCAGAAGAG-AAAAGGATTGTGAAAGAGGAGAAATTAAAGCAGGAGGA 1552
Query 1511 GAAATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAAGATTGGTAATTTCAGAGTTGA 1570
||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||
Sbjct 1553 GAAATATATGTGGGCTGTTCTTGATGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGA 1612
Query 1571 ACCGCCTGGGCT-TTTCAGAGGCCGTGGAGAACATCCCAAGATGGGAAAACT-AAAGAAG 1628
|| |||||| | |||| ||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct 1613 GCCCCCTGGGTTGTTTC-GAGGCCGGGGAGAACATCCCAAGATGGGGAAACTGAAA-AAG 1670
Query 1629 CGTATCCGTCCATGCGAGATCACCTTAAATATCGGGAAAG-GTGCTCCTATTCCAGAATG 1687
|| || ||||| || || || || | || || || |||| | || ||||||||||||||
Sbjct 1671 CGGATTCGTCCTTGTGATATTACAATCAACATTGGTAAAGAG-GCGCCTATTCCAGAATG 1729
Query 1688 TCCAATCGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAACACAGTTACCTGGCTAGC 1747
|| ||| |||||||||||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 1730 CCCTATCCCTGGTGAAAGATGGAAAGAAGTTAAGCATGACAATACTGTTACCTGGCTTGC 1789
Query 1748 TTTCTGG-GTTGATCCTATTAA-CCAGAAAGAATTCAAGTATGTATTTTTGGCACCTAGC 1805
||| ||| | ||||||||| || ||| ||||| |||||||||||||| |||||| |||||
Sbjct 1790 TTTTTGGAG-TGATCCTATCAATCCA-AAAGAGTTCAAGTATGTATTCTTGGCAGCTAGC 1847
Query 1806 AGTGC-TATGAAAGGG-CTGAGCGACAAAGAGAAGTACGAGAAAGCTAGGAATCTTAC-G 1862
||| | | || ||||| | ||||||||||||||||| |||||||| ||||| | |||
Sbjct 1848 AGTTCGT-TG-AAGGGACAAAGCGACAAAGAGAAGTATGAGAAAGCGAGGAAGC-TACAT 1904
Query 1863 GACCATATAGATAATATAAGGA-CAACATACACC-AAGAATTTTACCGCCAAGGATGTTA 1920
||||||||| | ||| | || || |||||||| ||| |||||| ||||||||| |
Sbjct 1905 AACCATATAGGGAGTATTA-GAGCAGCATACACCAAAG-ATTTTAATAACAAGGATGTAA 1962
Query 1921 CAACGAAGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGCTTAGGGCTGGAA 1980
||| | |||||| || ||||| ||||||||||| ||||| | || |||||||||||||
Sbjct 1963 CAAAGCGGCAAATAGCAGTGGCAACATATCTCATCGATAAGCTAGCCCTTAGGGCTGGAA 2022
Query 1981 ATGAGAAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAAAAGTTGGAAATG 2040
||||||||||||| |||||||| || ||||||||||||||||| || ||||| ||||| |
Sbjct 2023 ATGAGAAGGATGACGATGAGGCAGATACTGTTGGTTGTTGTACATTGAAAGTAGGAAACG 2082
Query 2041 TGGAGTGTATTCCTCCAAATAAAATAAAGTTTGACTTTCTTGGTAAGGATTCAATCCAGT 2100
|||||||||||||||||||||| ||||||||||||| |||||||| || || || ||||
Sbjct 2083 TGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGACTTCCTTGGTAAAGACTCTATTCAGT 2142
Query 2101 ATGTGAACACAGTTGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGACAGTTCCAGGCGG 2160
|||| ||||||||||||||||||||||| || || ||||| ||||| |||||||| || |
Sbjct 2143 ATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTATAAGGCAATTGGGCAGTTCCAAGCAG 2202
Query 2161 GAAAATCCAAAACAGATGATCTTTTTGATGAGTTGGACACAAGTAAACTGAATGCTCATC 2220
||||||| ||||| |||||||| ||||||||| | || || ||||| ||| ||||||
Sbjct 2203 GAAAATCGAAAACCGATGATCTCTTTGATGAGCTAGATACTTCAAAACTCAATACTCATC 2262
Query 2221 TGAAGGAACTTGTGCCTGGTCTCACAGCCAAAGTATTCCGTACATATAATGCTTCCATCA 2280
| ||||| ||| || |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2263 TTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGTATTCCGTACGTATAATGCATCCATCA 2322
Query 2281 CTTTGGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGAT-TTAAATCAGAAAA-TAGT 2338
| |||||| |||| ||||| ||||||||| ||| || || || | | |||| | ||
Sbjct 2323 CATTGGATTTAATGTTGAGTAAAGAAACCAGAGACGGTGACGTTCC-TGA-AAAAGTGGT 2380
Query 2339 AGTTTATCAGAAAGCAAACAAGGAGGTTGCCATAATCTGTAATCATCAGCGTACTGTATC 2398
||||||||| |||| |||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct 2381 GGTTTATCAGCAAGCGAACAAGGAGGTTGCTATCATTTGTAACCATCAACGTACTGTCTC 2440
Query 2399 -AAAGTCACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAACTCAAGG-AG 2456
||| || || || || ||| | || || || ||| || |||||||||||| |||| ||
Sbjct 2441 GAAA-TCTCACGGAGCACAAGTGGAGAAGCTGGCTGTGAAAATAGAAGAACT-AAGGGAG 2498
Query 2457 GGTCTTAAAGAGCTCAAAACTAATCTTGACCGGGCTAA-AAAGGGAA-AACCACCATTGG 2514
| |||||||| || | | |||| ||| ||||||| ||||| || ||| ||| ||
Sbjct 2499 CAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAAGAAAGG-AAGAAC-ACCGTT-- 2554
Query 2515 AA-GGT-TCTGATGGAAAGA-AGATTAG-AAGCTTAGA-ACCA-AACGCGTGGGAGAAGA 2568
|| || ||||||||||||| | | || || |||| | ||| || || | ||||||||
Sbjct 2555 AATGGGATCTGATGGAAAGAGAAAG-AGGAA-CTTA-ACACCTGAA-GCATTGGAGAAGA 2610
Query 2569 AGAT--TGCTCAACAG-A-GTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAA 2624
|||| ||| ||| | | | | |||||||||||| |||||| |||| ||||| ||||||
Sbjct 2611 AGATAATGCA-AAC-GCAAG-G-TAAGATCGAGAAGATGGAAAGAGATATGCAAACAAAA 2666
Query 2625 GAGGACT-TGAAAACCGTGGCACTAGGCACATCTAAGATCAATTACCTGGATCCTAGAAT 2683
|| || | ||||||| || ||| | ||||||||||||||||| ||| |||||||||| ||
Sbjct 2667 GAAGA-TATGAAAACTGTCGCATTGGGCACATCTAAGATCAACTACATGGATCCTAGGAT 2725
Query 2684 CACGGTTGCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCT 2743
||| ||||| ||||||||||| ||||| || || || || |||||||| | |||||||||
Sbjct 2726 CACTGTTGCGTGGTGCAAACGACATGATGTCCCCATTGAGAAGATATTTAACAAGTCTCT 2785
Query 2744 TTTGGAGAAATTTGCGTGGGCAATGGATGTAGAACCCGA-TTACAGATTCT 2793
| ||| || || || |||||||||||||| || || || || ||||||||
Sbjct 2786 TCTGGCTAAGTTCGCTTGGGCAATGGATGTTGATCCTGAGTT-CAGATTCT 2835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150952331487
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5