BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495617
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55320.1 | Symbols: | MBOAT (membrane bound O-acyl transfer... 743 0.0
AT5G55360.1 | Symbols: | MBOAT (membrane bound O-acyl transfer... 196 1e-49
> AT5G55320.1 | Symbols: | MBOAT (membrane bound O-acyl transferase)
family protein | chr5:22435680-22436699 REVERSE LENGTH=1020
Length=1020
Score = 743 bits (402), Expect = 0.0
Identities = 463/493 (94%), Gaps = 2/493 (0%)
Strand=Plus/Plus
Query 1 CCACATTTTTACGAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCCGGTGG 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 529 CCACATTTTCACGAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCAGGTGG 588
Query 61 AACCTCATAGTCTCGGCGAGTCTTCGGGCAATCGTCTACACTCCTGTGCGGCATGTCTGC 120
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 AACCTCATAGTCTCGGCAAGTCTTCGGGCAATCGTCTACACTCCTGTGCGGCGTGTCTGC 648
Query 121 CAAGGCGTAATGAGCTCTAATTATGCAATGTTGATTGGTATTTTTGTGACGTTTGTAGTC 180
||| | |||||||||||| |||||||||||||||||||| |||||| |||||||||| |
Sbjct 649 CAACGAGTAATGAGCTCTGATTATGCAATGTTGATTGGTGTTTTTGCGACGTTTGTAACC 708
Query 181 TCTGGTGTGGCTCATGAAGTGGTTTTCTTTTATATAACCCGTGAGATGCCTACAGGGGAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 709 TCTGGTGTGGCTCATGAAGTGGTTTTCTTTTATATAACCCGTGCGATGCCTACAGGGGAA 768
Query 241 GTCGCTTTGTTCTTTGTGTTACATGGAGTTTGCACGGTGGCGGAAGTGGCTGTGAAGAGG 300
|||||||| |||||| | |||||||||||||||||||||||||||||||| | |||||||
Sbjct 769 GTCGCTTTATTCTTTCTCTTACATGGAGTTTGCACGGTGGCGGAAGTGGCAGCGAAGAGG 828
Query 301 ACGGCGTTTGTACGGAGGTGGCCGGTGAGACCAGCCGTATCTTGGCTGCTCACGATGGGG 360
|||||||||||||||||||||||||||||||||| |||||||||| || ||||||| | |
Sbjct 829 ACGGCGTTTGTACGGAGGTGGCCGGTGAGACCAGTCGTATCTTGGATGTTCACGATAGCG 888
Query 361 TTTGTAAATGTGACCGCTGGTTGGCTGTTTTTTCCTCAGTTGATACGGAGCAACCTGATG 420
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 889 TTTGTAAATGTGACCGCTGGTTGGCTGTTTTTTCCTCAGTTGATTCGGAACAACCTGGGG 948
Query 421 GAGAGATGCTCCAATGAAATCTCCTTGCTCATTGATTTCTTCA-AACGCAAGTTAGTTGA 479
||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 949 GAGAGATGCTCCAATGAAATCTCCTTGCTCATTGATTTCTTCAGAA-GCAAGTTATTTTA 1007
Query 480 TTTTCCCCAGTGA 492
|||||||||||||
Sbjct 1008 TTTTCCCCAGTGA 1020
> AT5G55360.1 | Symbols: | MBOAT (membrane bound O-acyl transferase)
family protein | chr5:22443724-22444752 REVERSE LENGTH=1029
Length=1029
Score = 196 bits (106), Expect = 1e-49
Identities = 234/294 (80%), Gaps = 16/294 (5%)
Strand=Plus/Plus
Query 13 GAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCCGGTGGAACCTCATAGTC 72
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||
Sbjct 544 GAACCATACTTAGCCACTTCTCTTCAAGACTTCTGGGGTCGTCGGTGGAACCTCATGGTC 603
Query 73 TCGGCGAGTCTTCGGGCAATC-GTCTACACTCCTGTGCG-GCATGTCT-GCCAAGGC-GT 128
|||||| || || ||| | |||||| |||| | ||| | | | | ||| | | |
Sbjct 604 CCGGCGATTC-TCCGGCCGGCTGTCTAC-CTCCCG-GCGAG-ACGAATGGCC-TGTCGGA 658
Query 129 AA-TGAGCTCTAATTATGCAATGTTGATTGGTA-TTTTTGTGA-CGTTTGTAGTCTCTGG 185
|| | | ||| || | || ||||| |||| | |||| | | ||||| | ||||| ||
Sbjct 659 AAGTTAACTCCGATCAGGCTATGTT-CTTGGGAGTTTTCG-CAGCGTTTCTCGTCTCCGG 716
Query 186 TGTGGCTCATGAAG-TGGTTTTCTTTTATATAACCCGTGAGATGCCTACAGGGGAAGTCG 244
|| || ||||| || || | ||||| ||| | ||||||||| | |||||||||||||||
Sbjct 717 TGCGGTTCATG-AGATGCTCTTCTTCTATCTTACCCGTGAGGTTCCTACAGGGGAAGTCA 775
Query 245 CTTTGTTCTTTGTGTTACATGGAGTTTGCACGGTGGCGGAAGTGGCTGTGAAGA 298
||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 CTTGGTTCTTTTTGTTACATGGAGTTTGCACGGTGGCGGAAGTGGCGGTGAAGA 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5